Wall clock time and date at job start Mon Mar 30 2020 19:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47050 * 240.00474 * 2 1 3 5 5 O 1.45192 * 109.47187 * 120.00009 * 2 1 3 6 6 C 1.34230 * 117.00018 * 60.00373 * 5 2 1 7 7 O 1.20826 * 120.00015 * 359.97438 * 6 5 2 8 8 C 1.50701 * 120.00046 * 180.02562 * 6 5 2 9 9 N 1.46901 * 109.46921 * 179.97438 * 8 6 5 10 10 C 1.46839 * 111.00222 * 294.20814 * 9 8 6 11 11 C 1.53034 * 109.52552 * 174.16216 * 10 9 8 12 12 C 1.53123 * 109.28182 * 59.17780 * 11 10 9 13 13 C 1.50696 * 109.57716 * 182.41084 * 12 11 10 14 14 H 1.07997 * 119.99878 * 119.72167 * 13 12 11 15 15 C 1.37871 * 120.00268 * 299.71257 * 13 12 11 16 16 N 1.31517 * 120.00433 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99926 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.46838 * 89.99929 * 17 15 13 19 19 H 1.48493 * 109.47177 * 209.99535 * 17 15 13 20 20 H 1.48498 * 109.47178 * 329.99984 * 17 15 13 21 21 C 1.53120 * 109.16070 * 302.35293 * 12 11 10 22 22 C 1.46849 * 110.99649 * 169.99608 * 9 8 6 23 23 H 1.08996 * 109.47527 * 300.00083 * 1 2 3 24 24 H 1.09003 * 109.47259 * 60.00226 * 1 2 3 25 25 H 1.09002 * 109.47034 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47698 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47218 * 300.00321 * 3 2 1 28 28 H 1.09005 * 109.47066 * 59.99775 * 3 2 1 29 29 H 1.08997 * 109.46502 * 299.99559 * 4 2 1 30 30 H 1.08998 * 109.47234 * 59.99698 * 4 2 1 31 31 H 1.08998 * 109.46784 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47060 * 299.99765 * 8 6 5 33 33 H 1.09001 * 109.47380 * 59.99853 * 8 6 5 34 34 H 1.09006 * 109.46266 * 294.17473 * 10 9 8 35 35 H 1.09002 * 109.46276 * 54.14664 * 10 9 8 36 36 H 1.09006 * 109.50444 * 299.24199 * 11 10 9 37 37 H 1.09003 * 109.50687 * 179.12283 * 11 10 9 38 38 H 1.09005 * 109.51783 * 62.25186 * 12 11 10 39 39 H 0.96996 * 120.00257 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.50142 * 297.71204 * 21 12 11 41 41 H 1.08998 * 109.50777 * 177.59101 * 21 12 11 42 42 H 1.08991 * 109.46839 * 305.85721 * 22 9 8 43 43 H 1.09005 * 109.46224 * 65.84006 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6534 -1.9684 1.3378 7 8 0.9560 -2.5025 0.5081 8 6 2.1174 -2.7434 2.5441 9 7 1.5918 -4.1136 2.4776 10 6 0.1279 -4.1218 2.5924 11 6 -0.3942 -5.5437 2.3741 12 6 0.2237 -6.4755 3.4203 13 6 -0.2399 -7.8882 3.1749 14 1 0.4809 -8.6639 2.9625 15 6 -1.5843 -8.1905 3.2216 16 7 -1.9889 -9.4235 3.0080 17 14 -2.8311 -6.8488 3.5885 18 1 -3.2705 -6.2203 2.3167 19 1 -4.0050 -7.4395 4.2800 20 1 -2.2092 -5.8199 4.4601 21 6 1.7497 -6.4115 3.3115 22 6 2.2097 -4.9644 3.5027 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7488 -1.2493 30 1 1.6766 -0.2073 -2.1393 31 1 3.1300 -0.7215 -1.2491 32 1 3.2069 -2.7722 2.5604 33 1 1.7531 -2.2584 3.4497 34 1 -0.1604 -3.7776 3.5857 35 1 -0.2991 -3.4586 1.8402 36 1 -0.1181 -5.8835 1.3758 37 1 -1.4796 -5.5523 2.4748 38 1 -0.0840 -6.1590 4.4169 39 1 -2.9347 -9.6361 3.0405 40 1 2.0596 -6.7648 2.3280 41 1 2.1962 -7.0401 4.0820 42 1 3.2946 -4.9132 3.4116 43 1 1.9114 -4.6164 4.4917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542880067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:12 Heat of formation + Delta-G solvation = -84.017265 kcal Electronic energy + Delta-G solvation = -21821.219738 eV Core-core repulsion = 18673.561318 eV Total energy + Delta-G solvation = -3147.658420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87774 -38.57004 -36.79693 -34.27123 -33.89117 -31.67971 -30.19983 -28.21418 -27.61372 -27.55933 -25.04259 -22.58423 -22.23947 -21.09131 -19.59546 -18.84019 -17.12389 -16.65271 -16.54099 -16.19220 -15.59694 -14.71944 -14.45050 -14.31059 -14.17608 -13.72205 -13.34174 -13.09435 -12.83843 -12.68573 -12.51312 -12.23854 -12.11530 -12.07895 -12.02975 -11.63748 -11.56667 -11.37474 -11.29893 -10.85220 -10.53587 -10.46404 -10.13684 -9.96104 -9.74442 -9.54218 -9.04458 -8.86244 -8.46146 -8.04390 -6.01658 -3.99719 2.31064 2.54128 3.31976 3.40588 3.42768 4.17692 4.46122 4.51608 4.55942 4.64797 4.72694 5.14072 5.24353 5.25484 5.30213 5.33291 5.47604 5.48185 5.53083 5.63320 5.65996 5.66756 5.77788 5.84837 5.91278 6.08929 6.09694 6.14281 6.23666 6.39180 6.44745 6.57643 6.75471 6.83172 6.97784 7.25423 7.30129 7.47982 7.67656 7.83962 7.95488 8.59136 9.03011 9.61645 11.11934 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.004610 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.865247 B = 6071.787308 C = 6552.880294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.118 3.882 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.358 6.358 6 C 0.461 3.539 7 O -0.477 6.477 8 C 0.061 3.939 9 N -0.520 5.520 10 C 0.049 3.951 11 C -0.112 4.112 12 C 0.012 3.988 13 C -0.509 4.509 14 H 0.073 0.927 15 C 0.068 3.932 16 N -0.904 5.904 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.298 1.298 20 H -0.268 1.268 21 C -0.095 4.095 22 C 0.059 3.941 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.021 0.979 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.811 21.468 -3.460 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.082 3.918 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.276 6.276 6 C 0.302 3.698 7 O -0.362 6.362 8 C -0.068 4.068 9 N -0.247 5.247 10 C -0.078 4.078 11 C -0.150 4.150 12 C -0.007 4.007 13 C -0.547 4.547 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.542 5.542 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.226 1.226 20 H -0.193 1.193 21 C -0.133 4.133 22 C -0.068 4.068 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.554 21.014 -4.210 23.076 hybrid contribution -1.119 1.053 0.786 1.726 sum 7.436 22.068 -3.424 23.537 Atomic orbital electron populations 1.22497 0.94122 1.04974 1.02510 1.22127 0.94338 0.92105 0.83272 1.21841 1.02117 0.92814 1.02884 1.22487 1.01572 1.03490 0.96463 1.86522 1.70322 1.25691 1.45089 1.23590 0.77996 0.80196 0.87976 1.90584 1.33910 1.69261 1.42478 1.21583 1.02081 0.90234 0.92896 1.61654 1.07080 1.06007 1.49918 1.22384 0.86018 1.00494 0.98911 1.21966 0.98362 0.92287 1.02352 1.19212 0.91772 0.95719 0.94031 1.21055 0.93010 0.92659 1.47957 0.90841 1.25016 0.98443 0.95139 0.94650 1.69902 1.15577 1.18440 1.50297 0.86860 0.80776 0.82179 0.78470 1.20535 1.22626 1.19303 1.21495 0.98037 0.91997 1.01795 1.22235 0.97946 0.95166 0.91463 0.92148 0.91182 0.89592 0.91545 0.90504 0.91602 0.89456 0.91267 0.92089 0.87047 0.91289 0.96005 0.90433 0.91093 0.93460 0.96069 0.92773 0.91625 0.92083 0.91484 0.95198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 2 C 0.12 1.24 1.13 -90.62 -0.10 1.14 16 3 C -0.14 -1.07 8.85 37.16 0.33 -0.74 16 4 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 5 O -0.36 -4.42 9.89 -39.26 -0.39 -4.81 16 6 C 0.46 6.50 6.94 36.01 0.25 6.75 16 7 O -0.48 -7.99 9.83 -18.75 -0.18 -8.17 16 8 C 0.06 0.80 5.56 -4.97 -0.03 0.77 16 9 N -0.52 -8.75 4.40 -236.11 -1.04 -9.79 16 10 C 0.05 0.93 5.11 -3.84 -0.02 0.91 16 11 C -0.11 -2.54 4.84 -26.65 -0.13 -2.67 16 12 C 0.01 0.27 1.75 -91.65 -0.16 0.11 16 13 C -0.51 -14.50 9.15 -34.44 -0.32 -14.81 16 14 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 16 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 17 Si 0.89 22.54 24.36 -169.99 -4.14 18.40 16 18 H -0.28 -6.96 6.89 56.52 0.39 -6.57 16 19 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 20 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 21 C -0.10 -1.90 5.32 -26.65 -0.14 -2.04 16 22 C 0.06 0.95 5.46 -3.83 -0.02 0.93 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.09 1.16 5.89 -51.93 -0.31 0.85 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 1.16 5.89 -51.93 -0.31 0.86 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.11 1.18 7.99 -51.93 -0.41 0.77 16 33 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 1.47 5.78 -51.93 -0.30 1.17 16 36 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.05 1.13 3.38 -51.93 -0.18 0.96 16 38 H 0.02 0.52 7.19 -51.93 -0.37 0.14 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 0.90 8.02 -51.93 -0.42 0.48 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -31.83 325.53 -7.27 -39.10 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.39 Total: -1.23 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 0.19 Total: -11.01 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.26 Total: -37.18 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.57 Total: -12.98 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.14 Total: 18.40 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.83 -7.27 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542880067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.913 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds