Wall clock time and date at job start Mon Mar 30 2020 19:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09000 * 109.46676 * 305.51649 * 3 2 1 5 5 O 1.42902 * 109.47021 * 65.51778 * 3 2 1 6 6 C 1.42902 * 113.99802 * 264.75173 * 5 3 2 7 7 C 1.50697 * 109.46893 * 185.51870 * 3 2 1 8 8 O 1.21285 * 119.99981 * 249.27384 * 7 3 2 9 9 N 1.34773 * 120.00525 * 69.28038 * 7 3 2 10 10 C 1.46924 * 120.62713 * 4.13308 * 9 7 3 11 11 C 1.52757 * 109.01166 * 233.58761 * 10 9 7 12 12 C 1.53050 * 109.38124 * 305.58956 * 11 10 9 13 13 C 1.52997 * 109.44915 * 181.25168 * 12 11 10 14 14 C 1.50705 * 109.47243 * 64.93912 * 13 12 11 15 15 H 1.08002 * 119.99547 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00241 * 180.02562 * 14 13 12 17 17 N 1.31525 * 119.99828 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00289 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47408 * 89.99596 * 18 16 14 20 20 H 1.48502 * 109.47062 * 209.99904 * 18 16 14 21 21 H 1.48501 * 109.46976 * 329.99706 * 18 16 14 22 22 C 1.53039 * 109.53552 * 61.23646 * 12 11 10 23 23 C 1.46920 * 120.63568 * 184.41595 * 9 7 3 24 24 H 1.08999 * 109.47413 * 54.29286 * 1 2 3 25 25 H 1.09002 * 109.46965 * 174.29495 * 1 2 3 26 26 H 1.09003 * 109.47008 * 294.29021 * 1 2 3 27 27 H 1.08998 * 109.47597 * 120.00100 * 2 1 3 28 28 H 1.09005 * 109.47036 * 240.00032 * 2 1 3 29 29 H 1.08999 * 109.46891 * 65.25987 * 6 5 3 30 30 H 1.09003 * 109.47019 * 185.25505 * 6 5 3 31 31 H 1.08994 * 109.47018 * 305.25631 * 6 5 3 32 32 H 1.09003 * 109.58928 * 353.42252 * 10 9 7 33 33 H 1.09004 * 109.58808 * 113.84375 * 10 9 7 34 34 H 1.09004 * 109.56947 * 185.55573 * 11 10 9 35 35 H 1.08997 * 109.36377 * 65.49603 * 11 10 9 36 36 H 1.08993 * 109.45697 * 301.21582 * 12 11 10 37 37 H 1.08999 * 109.47347 * 184.93474 * 13 12 11 38 38 H 1.08998 * 109.47132 * 304.93880 * 13 12 11 39 39 H 0.97000 * 119.99697 * 180.02562 * 17 16 14 40 40 H 1.09005 * 109.49425 * 178.68150 * 22 12 11 41 41 H 1.08997 * 109.52323 * 58.60902 * 22 12 11 42 42 H 1.08995 * 109.58670 * 246.15754 * 23 9 7 43 43 H 1.09004 * 109.58499 * 6.43655 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5981 1.9840 -0.8365 5 8 1.6723 2.0777 1.2262 6 6 0.4604 2.8310 1.1499 7 6 3.5407 1.4447 -0.1366 8 8 4.2343 1.7856 0.7981 9 7 4.1123 1.0679 -1.2975 10 6 3.2857 0.7393 -2.4669 11 6 3.6736 -0.6475 -2.9766 12 6 5.1806 -0.6886 -3.2402 13 6 5.5660 -2.0672 -3.7803 14 6 4.9186 -2.2789 -5.1246 15 1 4.2944 -1.5075 -5.5509 16 6 5.1224 -3.4578 -5.8099 17 7 5.8821 -4.3975 -5.2905 18 14 4.3206 -3.7200 -7.4765 19 1 5.2286 -3.2314 -8.5451 20 1 4.0552 -5.1675 -7.6759 21 1 3.0403 -2.9697 -7.5334 22 6 5.9357 -0.4226 -1.9359 23 6 5.5736 0.9721 -1.4161 24 1 -0.3634 0.5998 -0.8344 25 1 -0.3633 -1.0226 -0.1022 26 1 -0.3633 0.4228 0.9367 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 -0.3754 2.1568 0.9629 30 1 0.2995 3.3567 2.0911 31 1 0.5326 3.5542 0.3376 32 1 2.2333 0.7414 -2.1827 33 1 3.4555 1.4751 -3.2529 34 1 3.1366 -0.8601 -3.9011 35 1 3.4153 -1.3939 -2.2254 36 1 5.4419 0.0746 -3.9731 37 1 6.6493 -2.1265 -3.8854 38 1 5.2254 -2.8369 -3.0878 39 1 6.0257 -5.2267 -5.7728 40 1 7.0089 -0.4752 -2.1196 41 1 5.6566 -1.1711 -1.1943 42 1 5.9338 1.7273 -2.1146 43 1 6.0306 1.1304 -0.4392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577518352.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:40 Heat of formation + Delta-G solvation = -99.294488 kcal Electronic energy + Delta-G solvation = -21735.412133 eV Core-core repulsion = 18587.091242 eV Total energy + Delta-G solvation = -3148.320890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40420 -38.23742 -37.04369 -34.23769 -33.35431 -32.08272 -30.83691 -28.82121 -27.86932 -25.88647 -24.44940 -22.89357 -22.31215 -21.58489 -20.00518 -18.66149 -17.55354 -16.75899 -16.33075 -15.88598 -15.52512 -14.89275 -14.59035 -14.39837 -14.14861 -13.75972 -13.39720 -13.22380 -13.07146 -12.81915 -12.62512 -12.30141 -12.12843 -11.81767 -11.80120 -11.53959 -11.22099 -11.02148 -10.91109 -10.83338 -10.72165 -10.49223 -10.16450 -9.96633 -9.71847 -9.35502 -9.25329 -9.00335 -8.39520 -8.36525 -6.02906 -4.05255 2.66393 2.85931 3.28313 3.35439 3.36826 3.80429 4.42154 4.45064 4.65635 4.72511 5.01943 5.05854 5.08903 5.16545 5.26980 5.31709 5.40224 5.43248 5.43877 5.50521 5.52128 5.64748 5.70579 5.79467 5.91534 5.96244 6.02101 6.10768 6.33660 6.35775 6.48235 6.62291 6.88715 6.93588 6.96829 7.07053 7.53629 7.63767 7.78210 7.96666 8.28420 8.38589 9.01295 9.58775 11.08304 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.004437 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.317143 B = 6308.963710 C = 6978.313737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.147 4.147 3 C 0.075 3.925 4 H 0.084 0.916 5 O -0.358 6.358 6 C 0.021 3.979 7 C 0.513 3.487 8 O -0.531 6.531 9 N -0.603 5.603 10 C 0.097 3.903 11 C -0.120 4.120 12 C -0.080 4.080 13 C 0.027 3.973 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.130 4.130 23 C 0.113 3.887 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.487 11.728 8.185 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.185 4.185 3 C 0.014 3.986 4 H 0.102 0.898 5 O -0.276 6.276 6 C -0.075 4.075 7 C 0.299 3.701 8 O -0.407 6.407 9 N -0.338 5.338 10 C -0.025 4.025 11 C -0.158 4.158 12 C -0.099 4.099 13 C -0.010 4.010 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.168 4.168 23 C -0.008 4.008 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.940 11.729 8.833 17.731 hybrid contribution -0.599 -0.290 -1.331 1.488 sum -10.539 11.438 7.503 17.268 Atomic orbital electron populations 1.21895 0.94880 1.02534 1.01802 1.22119 0.96988 0.94866 1.04533 1.22035 0.92662 0.95335 0.88587 0.89827 1.88029 1.41459 1.67141 1.30963 1.23064 0.86922 0.94965 1.02569 1.20402 0.89828 0.77432 0.82392 1.90677 1.64258 1.47102 1.38685 1.48115 1.07704 1.66753 1.11240 1.21992 0.94307 0.98873 0.87377 1.21854 0.98439 0.93752 1.01768 1.21187 0.92986 1.01339 0.94383 1.19126 0.96677 0.89659 0.95507 1.21228 1.29798 1.01084 1.03417 0.92610 1.25020 0.95378 0.96228 0.97802 1.69968 1.38298 1.06791 1.38354 0.86650 0.79753 0.77288 0.84619 1.20742 1.21308 1.19916 1.22033 1.00838 0.95150 0.98749 1.21672 0.78982 0.98111 1.02077 0.92638 0.91818 0.92068 0.90317 0.89328 0.93125 0.89459 0.94015 0.90367 0.91338 0.89543 0.92155 0.92290 0.96569 0.96601 0.93027 0.91032 0.92033 0.91747 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.79 37.16 0.33 -1.02 16 2 C -0.15 -1.66 5.20 -26.73 -0.14 -1.80 16 3 C 0.08 0.94 1.85 -27.88 -0.05 0.88 16 4 H 0.08 0.85 6.76 -51.93 -0.35 0.49 16 5 O -0.36 -4.81 9.78 -54.97 -0.54 -5.35 16 6 C 0.02 0.19 10.48 101.05 1.06 1.25 16 7 C 0.51 8.09 7.05 -10.99 -0.08 8.01 16 8 O -0.53 -10.40 15.96 -14.18 -0.23 -10.62 16 9 N -0.60 -8.86 2.98 -173.04 -0.52 -9.37 16 10 C 0.10 1.26 5.46 -3.94 -0.02 1.24 16 11 C -0.12 -1.96 5.03 -26.83 -0.13 -2.09 16 12 C -0.08 -1.50 2.10 -90.58 -0.19 -1.69 16 13 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 14 C -0.52 -13.68 8.39 -34.44 -0.29 -13.97 16 15 H 0.06 1.41 7.05 -52.49 -0.37 1.04 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 18 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.13 -2.15 5.36 -26.61 -0.14 -2.29 16 23 C 0.11 1.71 6.42 -3.72 -0.02 1.68 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.51 6.12 -51.93 -0.32 0.20 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.02 5.34 -51.93 -0.28 0.74 16 29 H 0.05 0.37 5.37 -51.93 -0.28 0.09 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.32 7.97 -51.93 -0.41 -0.09 16 32 H 0.08 0.83 4.60 -51.93 -0.24 0.59 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.49 6.91 -51.93 -0.36 1.13 16 35 H 0.06 1.01 7.55 -51.93 -0.39 0.62 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 1.34 7.03 -51.93 -0.37 0.98 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -31.96 331.48 -7.62 -39.59 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -7.15 Total: -1.83 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.22 Total: -34.85 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.76 Total: -15.97 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.96 -7.62 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577518352.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.708 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds