Wall clock time and date at job start Mon Mar 30 2020 19:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47043 * 2 1 4 4 H 1.08997 * 109.47203 * 54.50248 * 3 2 1 5 5 O 1.42906 * 109.46670 * 294.50527 * 3 2 1 6 6 C 1.42898 * 113.99686 * 116.07991 * 5 3 2 7 7 C 1.50697 * 109.47354 * 174.50926 * 3 2 1 8 8 O 1.21277 * 120.00519 * 114.99541 * 7 3 2 9 9 N 1.34785 * 119.99724 * 294.99631 * 7 3 2 10 10 C 1.46926 * 120.62858 * 359.72319 * 9 7 3 11 11 C 1.52759 * 109.00381 * 233.57898 * 10 9 7 12 12 C 1.53038 * 109.38654 * 305.59130 * 11 10 9 13 13 C 1.53004 * 109.46024 * 181.26226 * 12 11 10 14 14 C 1.50693 * 109.47249 * 64.92691 * 13 12 11 15 15 H 1.08004 * 120.00449 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99933 * 179.97438 * 14 13 12 17 17 N 1.31505 * 120.00027 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99813 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46933 * 60.00362 * 18 16 14 20 20 H 1.48494 * 109.47172 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47275 * 300.00428 * 18 16 14 22 22 C 1.53043 * 109.53835 * 61.24069 * 12 11 10 23 23 C 1.46925 * 120.62665 * 179.97438 * 9 7 3 24 24 H 1.09002 * 109.47343 * 293.72008 * 1 2 3 25 25 H 1.08994 * 109.47295 * 53.71995 * 1 2 3 26 26 H 1.09006 * 109.46964 * 173.72051 * 1 2 3 27 27 H 1.09000 * 109.47328 * 239.99766 * 2 1 3 28 28 H 1.09002 * 109.47417 * 119.99449 * 2 1 3 29 29 H 1.09001 * 109.47317 * 185.40942 * 6 5 3 30 30 H 1.09000 * 109.47194 * 305.41011 * 6 5 3 31 31 H 1.09004 * 109.47360 * 65.41142 * 6 5 3 32 32 H 1.08995 * 109.58634 * 353.41346 * 10 9 7 33 33 H 1.08998 * 109.58335 * 113.84284 * 10 9 7 34 34 H 1.08999 * 109.56267 * 185.54715 * 11 10 9 35 35 H 1.09007 * 109.35658 * 65.50184 * 11 10 9 36 36 H 1.09002 * 109.45593 * 301.21506 * 12 11 10 37 37 H 1.09001 * 109.46931 * 184.93143 * 13 12 11 38 38 H 1.09009 * 109.46778 * 304.92741 * 13 12 11 39 39 H 0.97001 * 120.00542 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.49398 * 178.68534 * 22 12 11 41 41 H 1.09000 * 109.52311 * 58.60321 * 22 12 11 42 42 H 1.09003 * 109.58770 * 246.15459 * 23 9 7 43 43 H 1.08996 * 109.59104 * 6.44586 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9840 0.8366 5 8 1.6718 2.0778 -1.2260 6 6 0.7713 3.1755 -1.0642 7 6 3.5408 1.4448 0.1359 8 8 4.2313 1.8589 -0.7710 9 7 4.1158 0.9865 1.2656 10 6 3.2924 0.4873 2.3753 11 6 3.6855 1.2216 3.6559 12 6 5.1931 1.0821 3.8790 13 6 5.5838 1.7903 5.1778 14 6 4.9397 1.0890 6.3458 15 1 4.3145 0.2243 6.1786 16 6 5.1494 1.5505 7.6280 17 7 5.9110 2.6030 7.8317 18 14 4.3515 0.6807 9.0759 19 1 4.8141 -0.7297 9.1221 20 1 4.7306 1.3681 10.3364 21 1 2.8750 0.7124 8.9200 22 6 5.9449 1.7163 2.7064 23 6 5.5776 0.9819 1.4127 24 1 -0.3634 0.4134 0.9409 25 1 -0.3633 0.6081 -0.8284 26 1 -0.3633 -1.0216 -0.1124 27 1 1.8933 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 0.4656 3.5422 -2.0441 30 1 -0.1071 2.8461 -0.5093 31 1 1.2686 3.9756 -0.5158 32 1 2.2396 0.6694 2.1598 33 1 3.4617 -0.5817 2.5038 34 1 3.1509 0.7907 4.5024 35 1 3.4278 2.2765 3.5611 36 1 5.4536 0.0260 3.9490 37 1 6.6675 1.7669 5.2925 38 1 5.2443 2.8256 5.1434 39 1 6.0588 2.9276 8.7338 40 1 7.0185 1.6373 2.8773 41 1 5.6664 2.7666 2.6205 42 1 5.9367 -0.0462 1.4612 43 1 6.0323 1.4879 0.5611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577518353.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:43 Heat of formation + Delta-G solvation = -119.793054 kcal Electronic energy + Delta-G solvation = -21647.472185 eV Core-core repulsion = 18498.262410 eV Total energy + Delta-G solvation = -3149.209775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.55641 -39.29160 -38.24909 -35.83172 -34.65462 -33.69467 -32.05897 -30.04314 -28.94292 -27.05366 -26.01928 -24.21202 -23.67911 -22.58047 -21.33805 -20.11918 -18.56377 -18.36110 -17.75115 -16.97939 -16.54287 -16.37878 -15.86787 -15.57386 -15.23549 -15.05359 -14.68711 -14.54750 -14.28328 -14.22208 -13.89592 -13.45560 -13.34513 -12.97749 -12.93346 -12.75574 -12.49076 -12.42954 -12.35592 -12.23605 -12.11342 -11.77580 -11.70370 -11.37837 -11.24162 -10.96677 -10.84916 -10.49577 -10.31741 -9.64650 -8.14064 -6.23876 1.44129 1.46244 1.50558 1.53684 1.81896 2.44974 2.85506 3.19960 3.40993 3.78999 3.85656 3.94684 4.03385 4.09151 4.17969 4.34202 4.40147 4.42746 4.51346 4.51707 4.58265 4.67192 4.78844 4.81437 4.85793 4.90173 4.95670 5.09027 5.10580 5.17531 5.30380 5.33050 5.39957 5.42215 5.54436 5.59411 5.82727 5.91084 6.04359 6.30287 6.40146 6.93136 7.10509 7.45215 8.97819 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024615 B = 0.004327 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.260979 B = 6470.113005 C = 7014.678907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.076 3.924 4 H 0.108 0.892 5 O -0.384 6.384 6 C 0.021 3.979 7 C 0.497 3.503 8 O -0.579 6.579 9 N -0.603 5.603 10 C 0.105 3.895 11 C -0.116 4.116 12 C -0.073 4.073 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.070 0.930 16 C -0.003 4.003 17 N -0.939 5.939 18 Si 0.960 3.040 19 H -0.267 1.267 20 H -0.292 1.292 21 H -0.263 1.263 22 C -0.121 4.121 23 C 0.118 3.882 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.066 0.934 37 H -0.016 1.016 38 H -0.017 1.017 39 H 0.260 0.740 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.700 -5.650 -13.844 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.014 3.986 4 H 0.126 0.874 5 O -0.302 6.302 6 C -0.075 4.075 7 C 0.286 3.714 8 O -0.459 6.459 9 N -0.336 5.336 10 C -0.017 4.017 11 C -0.154 4.154 12 C -0.092 4.092 13 C -0.005 4.005 14 C -0.564 4.564 15 H 0.088 0.912 16 C -0.200 4.200 17 N -0.580 5.580 18 Si 0.785 3.215 19 H -0.192 1.192 20 H -0.217 1.217 21 H -0.188 1.188 22 C -0.160 4.160 23 C -0.005 4.005 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.220 -5.385 -14.381 19.625 hybrid contribution 0.300 0.434 1.304 1.407 sum -11.920 -4.951 -13.077 18.374 Atomic orbital electron populations 1.21753 0.92920 1.03204 1.02639 1.22016 0.98597 0.92471 1.04054 1.22164 0.89529 0.97547 0.89325 0.87433 1.87969 1.65792 1.47908 1.28541 1.23144 0.92430 0.87958 1.04004 1.21536 0.91929 0.76463 0.81509 1.90644 1.65792 1.48444 1.41017 1.48257 1.07527 1.62136 1.15723 1.22125 0.95633 0.99342 0.84571 1.21750 0.96197 1.00099 0.97332 1.21046 0.95250 0.99376 0.93526 1.19023 0.94432 0.94354 0.92700 1.21645 1.29436 1.13420 0.91882 0.91155 1.25972 0.95968 0.95764 1.02329 1.70109 1.39992 1.25895 1.22000 0.85572 0.79326 0.78703 0.77883 1.19187 1.21748 1.18771 1.21915 1.00636 0.98984 0.94430 1.21576 0.79909 1.01451 0.97538 0.91233 0.92501 0.90929 0.91715 0.88311 0.88074 0.91319 0.94466 0.87174 0.88942 0.89960 0.93617 0.91564 0.99764 0.99816 0.93119 0.91075 0.93774 0.89708 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.86 71.98 0.71 -1.13 16 2 C -0.13 -2.27 5.18 30.59 0.16 -2.11 16 3 C 0.08 1.69 1.81 29.85 0.05 1.75 16 4 H 0.11 1.97 6.88 -2.39 -0.02 1.96 16 5 O -0.38 -9.69 9.37 -129.99 -1.22 -10.91 16 6 C 0.02 0.35 10.47 113.37 1.19 1.54 16 7 C 0.50 15.00 7.12 87.65 0.62 15.62 16 8 O -0.58 -22.64 15.92 15.97 0.25 -22.39 16 9 N -0.60 -16.60 2.98 -819.67 -2.44 -19.04 16 10 C 0.10 2.38 4.86 86.22 0.42 2.80 16 11 C -0.12 -3.62 5.17 30.53 0.16 -3.47 16 12 C -0.07 -2.73 2.10 -10.77 -0.02 -2.76 16 13 C 0.03 1.61 4.45 29.85 0.13 1.74 16 14 C -0.53 -27.88 8.39 25.60 0.21 -27.67 16 15 H 0.07 3.45 7.06 -2.91 -0.02 3.42 16 16 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 17 N -0.94 -56.43 13.28 21.45 0.28 -56.14 16 18 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 22 C -0.12 -4.09 5.36 30.69 0.16 -3.93 16 23 C 0.12 3.44 6.44 86.38 0.56 4.00 16 24 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.76 7.03 -2.39 -0.02 0.74 16 26 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.41 5.45 -2.39 -0.01 1.40 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 0.84 7.69 -2.39 -0.02 0.82 16 31 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.11 1.87 4.76 -2.39 -0.01 1.85 16 33 H 0.09 1.79 8.13 -2.39 -0.02 1.77 16 34 H 0.08 2.67 6.91 -2.39 -0.02 2.65 16 35 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H -0.02 -0.90 8.14 -2.39 -0.02 -0.91 16 38 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 39 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.08 2.40 7.00 -2.39 -0.02 2.38 16 Total: -1.00 -71.18 336.01 4.69 -66.49 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.97 Total: 10.85 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.82 Total: -13.33 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -2.16 Total: -75.18 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.96 Total: -33.30 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -71.18 4.69 -66.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577518353.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.307 kcal (2) G-P(sol) polarization free energy of solvation -71.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds