Wall clock time and date at job start Mon Mar 30 2020 19:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47374 * 2 1 4 4 H 1.08997 * 109.46801 * 54.99933 * 3 2 1 5 5 C 1.50696 * 109.47257 * 174.99881 * 3 2 1 6 6 H 1.08003 * 119.99708 * 119.99521 * 5 3 2 7 7 C 1.37877 * 120.00282 * 299.99738 * 5 3 2 8 8 N 1.31512 * 119.99926 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00079 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46974 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47167 * 120.00178 * 9 7 5 12 12 H 1.48507 * 109.46803 * 240.00148 * 9 7 5 13 13 N 1.46502 * 109.46779 * 295.00057 * 3 2 1 14 14 C 1.34778 * 119.99848 * 84.99811 * 13 3 2 15 15 O 1.21279 * 120.00192 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99809 * 179.97438 * 14 13 3 17 17 C 1.52992 * 109.46966 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.47103 * 304.99703 * 17 16 14 19 19 C 1.52997 * 109.47482 * 64.99950 * 17 16 14 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47233 * 299.99657 * 20 19 17 22 22 C 1.52997 * 109.46817 * 60.00194 * 21 20 19 23 23 C 1.52999 * 109.46961 * 185.00310 * 17 16 14 24 24 H 1.09002 * 109.46716 * 299.99630 * 23 17 16 25 25 O 1.42900 * 109.47616 * 59.99536 * 23 17 16 26 26 H 1.09004 * 109.47094 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47546 * 300.00025 * 1 2 3 28 28 H 1.09002 * 109.47198 * 60.00168 * 1 2 3 29 29 H 1.08998 * 109.47546 * 239.99975 * 2 1 3 30 30 H 1.09002 * 109.47198 * 119.99832 * 2 1 3 31 31 H 0.96999 * 120.00429 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99673 * 264.99730 * 13 3 2 33 33 H 1.08996 * 109.46741 * 59.99783 * 16 14 13 34 34 H 1.09001 * 109.46664 * 300.00360 * 16 14 13 35 35 H 1.09002 * 109.47153 * 59.99783 * 19 17 16 36 36 H 1.09001 * 109.46832 * 299.99974 * 19 17 16 37 37 H 1.08992 * 109.47399 * 59.99823 * 20 19 17 38 38 H 1.09004 * 109.46724 * 180.02562 * 20 19 17 39 39 H 1.08993 * 109.47662 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47075 * 300.00932 * 21 20 19 41 41 H 1.09002 * 109.47153 * 60.00231 * 22 21 20 42 42 H 1.09001 * 109.47289 * 180.02562 * 22 21 20 43 43 H 0.96696 * 114.00289 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8813 1.3818 10 1 6.5987 1.5463 0.1941 11 1 6.3990 1.6168 2.6102 12 1 6.4970 -0.5175 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3393 2.6327 -0.4341 16 6 0.0366 3.3386 -2.6546 17 6 -1.3822 3.8953 -2.5208 18 1 -2.0595 3.0956 -2.2213 19 6 -1.3988 5.0007 -1.4631 20 6 -2.8178 5.5569 -1.3290 21 6 -3.2699 6.1307 -2.6734 22 6 -3.2533 5.0253 -3.7311 23 6 -1.8337 4.4691 -3.8653 24 1 -1.1563 5.2688 -4.1649 25 8 -1.8182 3.4367 -4.8533 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0617 2.9495 32 1 2.2719 2.1231 -1.9978 33 1 0.0680 2.6145 -3.4686 34 1 0.7281 4.1541 -2.8667 35 1 -0.7214 5.8004 -1.7627 36 1 -1.0771 4.5918 -0.5053 37 1 -3.4948 4.7570 -1.0293 38 1 -2.8295 6.3447 -0.5757 39 1 -4.2806 6.5273 -2.5778 40 1 -2.5928 6.9305 -2.9732 41 1 -3.9303 4.2254 -3.4313 42 1 -3.5749 5.4341 -4.6890 43 1 -2.0934 3.7297 -5.7327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580668441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:46 Heat of formation + Delta-G solvation = -124.725265 kcal Electronic energy + Delta-G solvation = -21703.140510 eV Core-core repulsion = 18553.716858 eV Total energy + Delta-G solvation = -3149.423652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.73238 -38.33773 -35.60553 -34.96214 -32.49642 -32.23068 -30.78314 -29.64085 -27.47490 -26.10555 -23.03995 -22.62196 -21.59166 -20.06038 -19.69764 -19.18377 -17.28254 -16.95807 -15.82712 -15.28753 -15.14158 -14.84634 -14.42416 -14.32099 -13.86429 -13.67782 -13.02068 -12.90621 -12.65611 -12.58726 -12.11427 -11.93198 -11.58060 -11.32737 -11.26223 -11.19173 -10.92829 -10.89091 -10.80144 -10.63057 -10.32750 -10.28830 -10.14481 -10.03961 -9.80709 -9.55541 -8.98817 -8.73746 -8.45427 -7.70363 -6.08913 -4.17923 3.25241 3.33130 3.35836 3.56012 4.11660 4.20117 4.41292 4.64076 4.74913 4.96646 5.12898 5.20258 5.22434 5.34253 5.37746 5.45581 5.51305 5.68672 5.76586 5.87182 5.95743 5.97456 6.05370 6.22561 6.25346 6.32149 6.45448 6.52678 6.59218 6.64827 6.74061 7.11348 7.26365 7.44099 7.56065 7.59614 7.67624 7.80464 7.96471 8.23845 8.77732 8.84263 9.26518 9.50374 10.96381 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.004140 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.189222 B = 6761.985822 C = 6771.152133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.712 5.712 14 C 0.501 3.499 15 O -0.549 6.549 16 C -0.137 4.137 17 C -0.057 4.057 18 H 0.083 0.917 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.149 4.149 23 C 0.108 3.892 24 H 0.053 0.947 25 O -0.565 6.565 26 H 0.021 0.979 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.030 0.970 30 H 0.097 0.903 31 H 0.263 0.737 32 H 0.387 0.613 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 9.264 -12.246 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.359 5.359 14 C 0.287 3.713 15 O -0.429 6.429 16 C -0.177 4.177 17 C -0.076 4.076 18 H 0.101 0.899 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.187 4.187 23 C 0.049 3.951 24 H 0.071 0.929 25 O -0.370 6.370 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.219 0.781 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -10.352 8.777 -10.852 17.378 hybrid contribution 1.130 0.299 -0.794 1.413 sum -9.222 9.077 -11.646 17.409 Atomic orbital electron populations 1.21828 0.98333 0.97911 1.01273 1.21926 0.92642 0.99929 1.02121 1.18745 0.94036 0.89154 0.81272 0.93412 1.21298 0.90901 1.38736 1.06153 0.92128 1.24887 0.98508 0.94880 0.95437 1.69908 1.34959 1.37771 1.09371 0.86425 0.85044 0.77746 0.78066 1.19777 1.20921 1.20908 1.46514 1.14869 1.56169 1.18358 1.20408 0.82536 0.79189 0.89216 1.90611 1.51355 1.60037 1.40891 1.21691 0.97377 1.01197 0.97464 1.20808 0.96056 0.98582 0.92168 0.89865 1.21725 0.96174 0.96814 1.00959 1.21548 0.97462 1.00331 0.96389 1.21502 1.01081 0.97500 0.95373 1.22254 0.98091 0.99171 0.99205 1.21922 0.94955 0.89129 0.89103 0.92945 1.86567 1.90849 1.38225 1.21323 0.96036 0.93217 0.94148 0.95165 0.88436 0.92691 0.78116 0.88917 0.90076 0.92751 0.88609 0.91791 0.92031 0.92102 0.92103 0.91122 0.92168 0.78154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.15 0.32 -2.81 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.27 6.85 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.94 11.29 55.43 0.63 -24.31 16 9 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.71 -14.90 5.02 -54.93 -0.28 -15.18 16 14 C 0.50 9.83 6.11 -10.98 -0.07 9.77 16 15 O -0.55 -12.37 11.11 5.56 0.06 -12.31 16 16 C -0.14 -2.06 5.10 -27.88 -0.14 -2.20 16 17 C -0.06 -0.80 1.58 -90.63 -0.14 -0.94 16 18 H 0.08 1.36 7.96 -51.93 -0.41 0.95 16 19 C -0.12 -1.63 4.94 -26.73 -0.13 -1.77 16 20 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 21 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 22 C -0.15 -1.42 5.55 -26.70 -0.15 -1.57 16 23 C 0.11 1.18 2.90 -26.70 -0.08 1.11 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 O -0.56 -6.27 12.56 -35.23 -0.44 -6.72 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.80 16 28 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.39 7.16 8.54 -40.82 -0.35 6.81 16 33 H 0.09 1.36 7.54 -51.93 -0.39 0.96 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.63 5.95 -51.93 -0.31 1.32 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.37 2.43 9.08 45.56 0.41 2.85 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -30.29 330.79 -8.12 -38.41 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.64 Total: 10.00 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -1.41 Total: -10.61 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.35 Total: -39.49 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.38 Total: -19.02 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.29 -8.12 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580668441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.317 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds