Wall clock time and date at job start Mon Mar 30 2020 19:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47374 * 2 1 4 4 H 1.08997 * 109.46801 * 54.99933 * 3 2 1 5 5 C 1.50696 * 109.47257 * 174.99881 * 3 2 1 6 6 H 1.08003 * 119.99708 * 119.99521 * 5 3 2 7 7 C 1.37877 * 120.00282 * 299.99738 * 5 3 2 8 8 N 1.31512 * 119.99926 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00079 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46974 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47167 * 120.00178 * 9 7 5 12 12 H 1.48507 * 109.46803 * 240.00148 * 9 7 5 13 13 N 1.46502 * 109.46779 * 295.00057 * 3 2 1 14 14 C 1.34778 * 119.99848 * 84.99811 * 13 3 2 15 15 O 1.21279 * 120.00192 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99809 * 179.97438 * 14 13 3 17 17 C 1.52992 * 109.46966 * 180.02562 * 16 14 13 18 18 H 1.09002 * 109.47103 * 304.99703 * 17 16 14 19 19 C 1.52997 * 109.47482 * 64.99950 * 17 16 14 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47233 * 299.99657 * 20 19 17 22 22 C 1.52997 * 109.46817 * 60.00194 * 21 20 19 23 23 C 1.52999 * 109.46961 * 185.00310 * 17 16 14 24 24 H 1.09002 * 109.46716 * 299.99630 * 23 17 16 25 25 O 1.42900 * 109.47616 * 59.99536 * 23 17 16 26 26 H 1.09004 * 109.47094 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47546 * 300.00025 * 1 2 3 28 28 H 1.09002 * 109.47198 * 60.00168 * 1 2 3 29 29 H 1.08998 * 109.47546 * 239.99975 * 2 1 3 30 30 H 1.09002 * 109.47198 * 119.99832 * 2 1 3 31 31 H 0.96999 * 120.00429 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99673 * 264.99730 * 13 3 2 33 33 H 1.08996 * 109.46741 * 59.99783 * 16 14 13 34 34 H 1.09001 * 109.46664 * 300.00360 * 16 14 13 35 35 H 1.09002 * 109.47153 * 59.99783 * 19 17 16 36 36 H 1.09001 * 109.46832 * 299.99974 * 19 17 16 37 37 H 1.08992 * 109.47399 * 59.99823 * 20 19 17 38 38 H 1.09004 * 109.46724 * 180.02562 * 20 19 17 39 39 H 1.08993 * 109.47662 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47075 * 300.00932 * 21 20 19 41 41 H 1.09002 * 109.47153 * 60.00231 * 22 21 20 42 42 H 1.09001 * 109.47289 * 180.02562 * 22 21 20 43 43 H 0.96696 * 114.00289 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8813 1.3818 10 1 6.5987 1.5463 0.1941 11 1 6.3990 1.6168 2.6102 12 1 6.4970 -0.5175 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3393 2.6327 -0.4341 16 6 0.0366 3.3386 -2.6546 17 6 -1.3822 3.8953 -2.5208 18 1 -2.0595 3.0956 -2.2213 19 6 -1.3988 5.0007 -1.4631 20 6 -2.8178 5.5569 -1.3290 21 6 -3.2699 6.1307 -2.6734 22 6 -3.2533 5.0253 -3.7311 23 6 -1.8337 4.4691 -3.8653 24 1 -1.1563 5.2688 -4.1649 25 8 -1.8182 3.4367 -4.8533 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0617 2.9495 32 1 2.2719 2.1231 -1.9978 33 1 0.0680 2.6145 -3.4686 34 1 0.7281 4.1541 -2.8667 35 1 -0.7214 5.8004 -1.7627 36 1 -1.0771 4.5918 -0.5053 37 1 -3.4948 4.7570 -1.0293 38 1 -2.8295 6.3447 -0.5757 39 1 -4.2806 6.5273 -2.5778 40 1 -2.5928 6.9305 -2.9732 41 1 -3.9303 4.2254 -3.4313 42 1 -3.5749 5.4341 -4.6890 43 1 -2.0934 3.7297 -5.7327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580668441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:45 Heat of formation + Delta-G solvation = -145.844348 kcal Electronic energy + Delta-G solvation = -21704.056302 eV Core-core repulsion = 18553.716858 eV Total energy + Delta-G solvation = -3150.339444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.05497 -39.61511 -36.96843 -36.33009 -34.26075 -33.64286 -32.58161 -30.55144 -29.21637 -27.54486 -24.95498 -23.60754 -22.76906 -21.64042 -20.95018 -20.73953 -18.78973 -18.10503 -17.40995 -17.14040 -16.50453 -16.13864 -15.99066 -15.33453 -15.15201 -14.82134 -14.59716 -14.31234 -13.98665 -13.82669 -13.58619 -13.32191 -13.20540 -13.05608 -12.78782 -12.71495 -12.43172 -12.24630 -12.15166 -12.03816 -11.88040 -11.59938 -11.55824 -11.30254 -11.11064 -11.02565 -10.66744 -10.54870 -10.29778 -9.53115 -8.15452 -6.32764 1.43680 1.44678 1.56655 1.97642 2.37774 2.74535 3.13820 3.35275 3.70492 3.83071 4.04898 4.17519 4.22368 4.33274 4.45598 4.48527 4.48944 4.52407 4.56852 4.64133 4.72977 4.78394 4.86805 5.02226 5.07655 5.10446 5.22207 5.24641 5.28422 5.30132 5.33772 5.44836 5.49923 5.57771 5.58453 5.69602 5.81210 5.97140 6.18995 6.76643 7.01827 7.08723 7.35315 7.69407 8.90072 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030925 B = 0.004140 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.189222 B = 6761.985822 C = 6771.152133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.711 5.711 14 C 0.495 3.505 15 O -0.582 6.582 16 C -0.124 4.124 17 C -0.057 4.057 18 H 0.050 0.950 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.146 4.146 23 C 0.115 3.885 24 H 0.072 0.928 25 O -0.583 6.583 26 H 0.043 0.957 27 H 0.025 0.975 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.401 0.599 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.641 10.588 -14.882 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.360 5.360 14 C 0.283 3.717 15 O -0.463 6.463 16 C -0.164 4.164 17 C -0.077 4.077 18 H 0.069 0.931 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.184 4.184 23 C 0.056 3.944 24 H 0.090 0.910 25 O -0.391 6.391 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.235 0.765 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.959 10.118 -13.542 19.620 hybrid contribution 0.950 -0.115 0.053 0.959 sum -9.009 10.003 -13.489 19.057 Atomic orbital electron populations 1.21656 0.97042 0.98939 1.00208 1.21782 0.93686 0.99443 1.01074 1.18315 0.93516 0.89021 0.81678 0.98519 1.21634 0.91570 1.38743 1.06597 0.91153 1.25779 1.03319 0.94397 0.95033 1.70060 1.36984 1.38477 1.09915 0.85326 0.79157 0.77813 0.78206 1.18445 1.20964 1.20486 1.46325 1.15922 1.56402 1.17365 1.21290 0.81475 0.78418 0.90526 1.90611 1.52173 1.60911 1.42625 1.21671 0.98569 1.01703 0.94411 1.20783 0.94637 0.97756 0.94480 0.93105 1.21625 0.97902 0.97065 0.98848 1.21535 0.95724 1.00015 0.98429 1.21480 1.02216 0.97652 0.93557 1.22232 0.96775 0.98737 1.00607 1.21791 0.96201 0.89106 0.87282 0.90970 1.86509 1.91120 1.38783 1.22718 0.93835 0.95573 0.93837 0.94317 0.91120 0.92664 0.76455 0.87867 0.87504 0.91218 0.92873 0.93418 0.91471 0.90621 0.90636 0.92671 0.89288 0.75658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.51 71.98 0.61 -5.08 16 2 C -0.12 -6.16 5.45 30.59 0.17 -5.99 16 3 C 0.28 14.59 2.24 44.25 0.10 14.69 16 4 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 5 C -0.55 -29.44 8.73 25.60 0.22 -29.22 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -53.18 11.29 21.45 0.24 -52.94 16 9 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 13 N -0.71 -30.04 5.02 -446.08 -2.24 -32.28 16 14 C 0.50 19.73 6.11 87.66 0.54 20.26 16 15 O -0.58 -27.51 11.11 -3.03 -0.03 -27.55 16 16 C -0.12 -3.56 5.10 29.85 0.15 -3.40 16 17 C -0.06 -1.56 1.58 -10.80 -0.02 -1.58 16 18 H 0.05 1.70 7.96 -2.39 -0.02 1.68 16 19 C -0.12 -3.19 4.94 30.59 0.15 -3.04 16 20 C -0.12 -2.68 5.92 30.60 0.18 -2.49 16 21 C -0.11 -1.78 5.92 30.59 0.18 -1.60 16 22 C -0.15 -2.35 5.55 30.61 0.17 -2.18 16 23 C 0.11 2.20 2.90 30.61 0.09 2.29 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 O -0.58 -11.27 12.56 -148.98 -1.87 -13.14 16 26 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.03 1.31 7.85 -2.39 -0.02 1.29 16 28 H 0.04 1.98 5.65 -2.39 -0.01 1.97 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.40 14.52 8.54 -92.71 -0.79 13.73 16 33 H 0.10 2.81 7.54 -2.39 -0.02 2.79 16 34 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.91 5.95 -2.39 -0.01 1.89 16 37 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.39 3.74 9.08 -74.06 -0.67 3.07 16 Total: -1.00 -68.20 330.79 0.65 -67.55 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.47 Total: 29.88 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 2.99 Total: -16.09 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -2.00 Total: -85.22 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -1.90 Total: -40.69 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -68.20 0.65 -67.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580668441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.295 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds