Wall clock time and date at job start Mon Mar 30 2020 19:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 H 1.09002 * 109.51569 * 305.00198 * 3 2 1 5 5 C 1.53300 * 109.51207 * 184.89809 * 3 2 1 6 6 N 1.47152 * 108.38371 * 187.72400 * 5 3 2 7 7 C 1.34771 * 120.98211 * 230.55705 * 6 5 3 8 8 O 1.21280 * 120.00084 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.47439 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47304 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47304 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47439 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99893 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00442 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99836 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00507 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46914 * 60.00368 * 17 15 13 19 19 H 1.48497 * 109.47390 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47183 * 300.00424 * 17 15 13 21 21 C 1.47150 * 118.03412 * 50.54029 * 6 5 3 22 22 C 1.53296 * 108.38528 * 309.46178 * 21 6 5 23 23 O 1.42960 * 109.55157 * 65.13288 * 3 2 1 24 24 H 1.09003 * 109.47457 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47186 * 299.99552 * 1 2 3 26 26 H 1.09002 * 109.47220 * 59.99887 * 1 2 3 27 27 H 1.09008 * 109.46732 * 240.00629 * 2 1 3 28 28 H 1.08992 * 109.47156 * 120.00648 * 2 1 3 29 29 H 1.08998 * 109.68273 * 307.45058 * 5 3 2 30 30 H 1.09001 * 109.67481 * 67.96669 * 5 3 2 31 31 H 1.08996 * 109.47841 * 300.00498 * 9 7 6 32 32 H 1.09004 * 109.46867 * 60.00498 * 9 7 6 33 33 H 1.09004 * 109.46963 * 300.00080 * 10 9 7 34 34 H 1.08995 * 109.46677 * 60.00050 * 10 9 7 35 35 H 1.09009 * 109.47214 * 299.99950 * 11 10 9 36 36 H 1.08995 * 109.47578 * 60.00155 * 11 10 9 37 37 H 1.08991 * 109.46945 * 300.00024 * 12 11 10 38 38 H 1.09004 * 109.46769 * 59.99887 * 12 11 10 39 39 H 0.96998 * 120.00026 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.68517 * 69.18604 * 21 6 5 41 41 H 1.08998 * 109.68081 * 189.70677 * 21 6 5 42 42 H 1.08997 * 109.51548 * 172.22770 * 22 21 6 43 43 H 1.09000 * 109.51318 * 292.32957 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9822 -0.8416 5 6 3.5680 1.4454 -0.1234 6 7 4.0463 2.8241 0.0657 7 6 4.8924 3.3920 -0.8163 8 8 5.2705 2.7656 -1.7835 9 6 5.3687 4.8053 -0.6006 10 6 6.3119 5.2048 -1.7372 11 6 6.7960 6.6395 -1.5179 12 6 7.7397 7.0387 -2.6542 13 6 8.2160 8.4520 -2.4385 14 1 7.8796 9.0096 -1.5770 15 6 9.0819 9.0329 -3.3405 16 7 9.4920 8.3536 -4.3894 17 14 9.6729 10.7845 -3.0728 18 1 10.3933 10.8713 -1.7771 19 1 10.5897 11.1716 -4.1750 20 1 8.5063 11.7030 -3.0531 21 6 3.5732 3.5645 1.2461 22 6 2.0449 3.4584 1.3028 23 8 1.6654 2.0824 1.2223 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9993 0.7990 0.6411 30 1 3.8571 1.0882 -1.1118 31 1 4.5122 5.4793 -0.5860 32 1 5.8977 4.8693 0.3503 33 1 7.1686 4.5309 -1.7522 34 1 5.7826 5.1408 -2.6879 35 1 5.9395 7.3136 -1.5026 36 1 7.3254 6.7031 -0.5673 37 1 8.5960 6.3646 -2.6690 38 1 7.2106 6.9750 -3.6051 39 1 10.1009 8.7624 -5.0242 40 1 4.0049 3.1316 2.1484 41 1 3.8662 4.6112 1.1646 42 1 1.6852 3.8810 2.2409 43 1 1.6106 4.0062 0.4665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588274544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:52 Heat of formation + Delta-G solvation = -110.416730 kcal Electronic energy + Delta-G solvation = -20543.747458 eV Core-core repulsion = 17394.944272 eV Total energy + Delta-G solvation = -3148.803187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.55828 -38.68625 -35.11332 -34.97335 -34.29905 -32.63485 -30.65230 -29.75207 -28.00570 -25.73727 -24.40889 -23.21789 -22.01925 -21.24200 -20.03475 -19.08560 -17.22862 -17.02997 -16.23492 -16.04403 -15.93913 -15.33773 -15.21966 -14.49328 -14.44136 -14.09121 -13.82292 -13.60185 -13.28765 -12.73395 -12.42066 -12.25855 -12.19279 -11.81801 -11.64811 -11.56700 -11.42594 -11.34874 -10.97470 -10.90168 -10.53967 -10.53794 -10.43025 -10.39270 -9.79366 -9.61507 -9.22738 -8.99353 -8.75314 -8.30106 -5.94938 -3.97644 2.62691 2.70913 3.34225 3.35280 3.39700 3.41840 4.26062 4.43369 4.49251 4.58585 4.64992 4.72724 4.75558 4.90815 4.99085 5.17420 5.22153 5.27834 5.33044 5.34865 5.40217 5.40694 5.46864 5.59533 5.61483 5.76784 5.81946 5.95641 6.11932 6.17535 6.30323 6.53624 6.78861 6.82828 6.99925 7.17264 7.23349 7.73841 7.90006 8.06233 8.14046 8.47879 9.09845 9.65900 11.16370 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046760 B = 0.002746 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.658645 B =10195.306065 C =10535.989735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.078 3.922 4 H 0.063 0.937 5 C 0.082 3.918 6 N -0.625 5.625 7 C 0.516 3.484 8 O -0.533 6.533 9 C -0.137 4.137 10 C -0.104 4.104 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.072 3.928 22 C 0.048 3.952 23 O -0.376 6.376 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.261 0.739 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.072 -14.642 13.255 26.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.019 3.981 4 H 0.081 0.919 5 C -0.041 4.041 6 N -0.361 5.361 7 C 0.306 3.694 8 O -0.408 6.408 9 C -0.177 4.177 10 C -0.142 4.142 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.051 4.051 22 C -0.030 4.030 23 O -0.294 6.294 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.826 -15.054 12.698 26.564 hybrid contribution 0.529 1.183 0.001 1.296 sum -17.297 -13.871 12.699 25.551 Atomic orbital electron populations 1.21702 0.94908 1.01669 1.02338 1.21509 0.97002 0.93645 1.03113 1.22561 0.93344 0.94773 0.87400 0.91869 1.22272 0.94112 0.83577 1.04151 1.48256 1.47890 1.14534 1.25440 1.21158 0.77329 0.89480 0.81463 1.90697 1.56154 1.64698 1.29253 1.21825 1.01431 0.91767 1.02678 1.21469 0.97960 0.98408 0.96315 1.21648 0.99503 0.92777 1.00811 1.19090 0.93851 0.95929 0.92837 1.21239 1.27180 0.98961 1.08539 0.92814 1.25045 0.96427 0.97832 0.95284 1.69967 1.33820 1.37038 1.12654 0.86663 0.78629 0.85056 0.77659 1.20287 1.21319 1.20285 1.22455 0.95508 0.98501 0.88684 1.22974 0.93538 0.83392 1.03087 1.87945 1.79799 1.23621 1.38067 0.92591 0.91918 0.92864 0.90214 0.90832 0.90930 0.88143 0.89176 0.89081 0.91767 0.91799 0.93489 0.93467 0.96588 0.96600 0.92978 0.90467 0.88216 0.87501 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.81 37.16 0.36 -0.63 16 2 C -0.11 -0.82 5.65 -26.73 -0.15 -0.97 16 3 C 0.08 0.69 2.78 -26.58 -0.07 0.62 16 4 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 5 C 0.08 0.85 5.93 -3.53 -0.02 0.82 16 6 N -0.63 -7.10 3.02 -172.28 -0.52 -7.62 16 7 C 0.52 7.52 7.71 -10.99 -0.08 7.43 16 8 O -0.53 -9.89 15.45 5.56 0.09 -9.80 16 9 C -0.14 -1.86 4.07 -27.88 -0.11 -1.97 16 10 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 11 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -15.05 9.11 -34.45 -0.31 -15.37 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 17 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.07 0.58 6.54 -3.53 -0.02 0.56 16 22 C 0.05 0.35 6.99 37.31 0.26 0.61 16 23 O -0.38 -3.47 9.93 -35.23 -0.35 -3.82 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.46 7.83 -51.93 -0.41 0.06 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.17 7.08 -51.93 -0.37 0.80 16 31 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 32 H 0.09 1.07 8.02 -51.93 -0.42 0.65 16 33 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.68 6.05 -51.93 -0.31 0.36 16 42 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -33.98 345.94 -8.29 -42.27 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -7.78 Total: -4.89 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -0.65 Total: -11.37 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.22 Total: -34.52 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.26 Total: -13.63 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.98 -8.29 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588274544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.148 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds