Wall clock time and date at job start Mon Mar 30 2020 19:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 H 1.09002 * 109.51569 * 305.00198 * 3 2 1 5 5 C 1.53300 * 109.51207 * 184.89809 * 3 2 1 6 6 N 1.47152 * 108.38371 * 187.72400 * 5 3 2 7 7 C 1.34771 * 120.98211 * 230.55705 * 6 5 3 8 8 O 1.21280 * 120.00084 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.47439 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47304 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47304 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47439 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99893 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00442 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99836 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00507 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46914 * 60.00368 * 17 15 13 19 19 H 1.48497 * 109.47390 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47183 * 300.00424 * 17 15 13 21 21 C 1.47150 * 118.03412 * 50.54029 * 6 5 3 22 22 C 1.53296 * 108.38528 * 309.46178 * 21 6 5 23 23 O 1.42960 * 109.55157 * 65.13288 * 3 2 1 24 24 H 1.09003 * 109.47457 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47186 * 299.99552 * 1 2 3 26 26 H 1.09002 * 109.47220 * 59.99887 * 1 2 3 27 27 H 1.09008 * 109.46732 * 240.00629 * 2 1 3 28 28 H 1.08992 * 109.47156 * 120.00648 * 2 1 3 29 29 H 1.08998 * 109.68273 * 307.45058 * 5 3 2 30 30 H 1.09001 * 109.67481 * 67.96669 * 5 3 2 31 31 H 1.08996 * 109.47841 * 300.00498 * 9 7 6 32 32 H 1.09004 * 109.46867 * 60.00498 * 9 7 6 33 33 H 1.09004 * 109.46963 * 300.00080 * 10 9 7 34 34 H 1.08995 * 109.46677 * 60.00050 * 10 9 7 35 35 H 1.09009 * 109.47214 * 299.99950 * 11 10 9 36 36 H 1.08995 * 109.47578 * 60.00155 * 11 10 9 37 37 H 1.08991 * 109.46945 * 300.00024 * 12 11 10 38 38 H 1.09004 * 109.46769 * 59.99887 * 12 11 10 39 39 H 0.96998 * 120.00026 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.68517 * 69.18604 * 21 6 5 41 41 H 1.08998 * 109.68081 * 189.70677 * 21 6 5 42 42 H 1.08997 * 109.51548 * 172.22770 * 22 21 6 43 43 H 1.09000 * 109.51318 * 292.32957 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9822 -0.8416 5 6 3.5680 1.4454 -0.1234 6 7 4.0463 2.8241 0.0657 7 6 4.8924 3.3920 -0.8163 8 8 5.2705 2.7656 -1.7835 9 6 5.3687 4.8053 -0.6006 10 6 6.3119 5.2048 -1.7372 11 6 6.7960 6.6395 -1.5179 12 6 7.7397 7.0387 -2.6542 13 6 8.2160 8.4520 -2.4385 14 1 7.8796 9.0096 -1.5770 15 6 9.0819 9.0329 -3.3405 16 7 9.4920 8.3536 -4.3894 17 14 9.6729 10.7845 -3.0728 18 1 10.3933 10.8713 -1.7771 19 1 10.5897 11.1716 -4.1750 20 1 8.5063 11.7030 -3.0531 21 6 3.5732 3.5645 1.2461 22 6 2.0449 3.4584 1.3028 23 8 1.6654 2.0824 1.2223 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.9993 0.7990 0.6411 30 1 3.8571 1.0882 -1.1118 31 1 4.5122 5.4793 -0.5860 32 1 5.8977 4.8693 0.3503 33 1 7.1686 4.5309 -1.7522 34 1 5.7826 5.1408 -2.6879 35 1 5.9395 7.3136 -1.5026 36 1 7.3254 6.7031 -0.5673 37 1 8.5960 6.3646 -2.6690 38 1 7.2106 6.9750 -3.6051 39 1 10.1009 8.7624 -5.0242 40 1 4.0049 3.1316 2.1484 41 1 3.8662 4.6112 1.1646 42 1 1.6852 3.8810 2.2409 43 1 1.6106 4.0062 0.4665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588274544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:49 Heat of formation + Delta-G solvation = -131.842342 kcal Electronic energy + Delta-G solvation = -20544.676543 eV Core-core repulsion = 17394.944272 eV Total energy + Delta-G solvation = -3149.732271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.47248 -39.61967 -36.68029 -35.99203 -34.99898 -34.59699 -31.82119 -30.92255 -29.03130 -27.31914 -25.33790 -24.32570 -23.29443 -22.00510 -21.73014 -20.05813 -18.45728 -18.17861 -17.71930 -17.12133 -16.93037 -16.48561 -16.24426 -15.89320 -15.65311 -14.89562 -14.70760 -14.53563 -14.51035 -14.13139 -13.68147 -13.62225 -13.45730 -13.00676 -12.81666 -12.78502 -12.48629 -12.36627 -12.16606 -12.15394 -12.01115 -11.91504 -11.63537 -11.39315 -11.33838 -11.19425 -11.12726 -10.75208 -10.54465 -9.62796 -8.18574 -6.30974 1.40464 1.44582 1.52412 1.52914 1.81334 2.42072 2.72665 3.14028 3.47074 3.62596 3.90579 3.95292 3.99397 4.03022 4.09062 4.18275 4.33806 4.34217 4.48520 4.57935 4.62661 4.65443 4.73188 4.76245 4.78812 4.86492 4.88229 4.96628 5.09824 5.16194 5.20348 5.30397 5.34645 5.38893 5.41989 5.55929 5.77349 5.87670 6.14152 6.23969 6.25548 6.87424 7.07017 7.38688 8.93542 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046760 B = 0.002746 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.658645 B =10195.306065 C =10535.989735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.084 3.916 4 H 0.053 0.947 5 C 0.079 3.921 6 N -0.620 5.620 7 C 0.511 3.489 8 O -0.586 6.586 9 C -0.126 4.126 10 C -0.096 4.096 11 C -0.094 4.094 12 C 0.018 3.982 13 C -0.542 4.542 14 H 0.067 0.933 15 C -0.008 4.008 16 N -0.939 5.939 17 Si 0.970 3.030 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.264 1.264 21 C 0.066 3.934 22 C 0.045 3.955 23 O -0.384 6.384 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.062 0.938 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.263 0.737 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.135 0.865 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.308 -13.448 15.876 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.026 3.974 4 H 0.071 0.929 5 C -0.044 4.044 6 N -0.354 5.354 7 C 0.302 3.698 8 O -0.466 6.466 9 C -0.165 4.165 10 C -0.134 4.134 11 C -0.132 4.132 12 C -0.019 4.019 13 C -0.580 4.580 14 H 0.085 0.915 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.212 1.212 20 H -0.188 1.188 21 C -0.056 4.056 22 C -0.032 4.032 23 O -0.303 6.303 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.153 0.847 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.105 -13.862 15.378 28.172 hybrid contribution 0.892 0.763 -0.806 1.424 sum -18.213 -13.099 14.572 26.751 Atomic orbital electron populations 1.21674 0.94438 1.02316 1.01885 1.21532 0.97349 0.92589 1.03664 1.22494 0.91989 0.95748 0.87192 0.92881 1.22355 0.95332 0.83277 1.03437 1.48326 1.46514 1.14976 1.25560 1.21318 0.77512 0.89728 0.81249 1.90681 1.58399 1.65913 1.31622 1.21707 1.01581 0.91674 1.01568 1.21254 0.98085 0.96488 0.97558 1.21438 0.98682 0.94375 0.98682 1.19056 0.93782 0.95093 0.93955 1.21723 1.27340 0.99890 1.09007 0.91464 1.26111 0.96551 1.03018 0.94820 1.70132 1.34594 1.39385 1.13796 0.85424 0.78386 0.78820 0.77951 1.18876 1.21152 1.18842 1.22777 0.96043 0.99255 0.87539 1.23169 0.92980 0.82567 1.04519 1.87945 1.79848 1.24650 1.37878 0.91424 0.92547 0.93087 0.89593 0.90379 0.89959 0.90055 0.86236 0.86262 0.93960 0.93930 0.91906 0.91950 0.99795 0.99770 0.92860 0.89088 0.86371 0.84712 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.81 71.98 0.71 -1.06 16 2 C -0.11 -1.49 5.65 30.59 0.17 -1.32 16 3 C 0.08 1.42 2.78 30.69 0.09 1.50 16 4 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 5 C 0.08 1.59 5.93 86.36 0.51 2.10 16 6 N -0.62 -13.17 3.02 -817.37 -2.47 -15.64 16 7 C 0.51 14.59 7.71 87.66 0.68 15.27 16 8 O -0.59 -22.54 15.45 -3.03 -0.05 -22.59 16 9 C -0.13 -3.15 4.07 29.85 0.12 -3.02 16 10 C -0.10 -3.48 4.50 30.59 0.14 -3.34 16 11 C -0.09 -3.83 5.15 30.59 0.16 -3.67 16 12 C 0.02 1.01 4.97 29.85 0.15 1.15 16 13 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 14 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 15 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 16 N -0.94 -59.33 13.29 21.45 0.28 -59.04 16 17 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 21 C 0.07 0.85 6.54 86.35 0.56 1.41 16 22 C 0.04 0.53 6.99 72.08 0.50 1.03 16 23 O -0.38 -6.30 9.93 -148.98 -1.48 -7.78 16 24 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.76 7.83 -2.39 -0.02 0.74 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.96 7.08 -2.39 -0.02 1.95 16 31 H 0.12 2.32 7.66 -2.39 -0.02 2.30 16 32 H 0.12 2.35 8.02 -2.39 -0.02 2.33 16 33 H 0.04 1.69 8.10 -2.39 -0.02 1.68 16 34 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 35 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 39 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.12 1.10 6.05 -2.39 -0.01 1.09 16 42 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -76.13 345.94 3.75 -72.38 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.95 Total: 7.01 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 4.48 Total: -21.11 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -2.18 Total: -74.69 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.53 Total: -30.36 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -76.13 3.75 -72.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588274544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.461 kcal (2) G-P(sol) polarization free energy of solvation -76.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds