Wall clock time and date at job start Mon Mar 30 2020 19:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47296 * 2 1 4 4 H 1.08998 * 110.88732 * 308.88608 * 3 2 1 5 5 C 1.55126 * 110.90497 * 72.97665 * 3 2 1 6 6 N 1.47423 * 104.72422 * 155.27305 * 5 3 2 7 7 C 1.34777 * 125.65106 * 155.81451 * 6 5 3 8 8 O 1.21278 * 119.99854 * 359.72686 * 7 6 5 9 9 C 1.50703 * 120.00161 * 179.71993 * 7 6 5 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08009 * 120.00339 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00310 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99776 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00473 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47245 * 89.99913 * 17 15 13 19 19 H 1.48500 * 109.47049 * 210.00247 * 17 15 13 20 20 H 1.48499 * 109.47170 * 330.00074 * 17 15 13 21 21 C 1.47025 * 108.70465 * 335.55925 * 6 5 3 22 22 C 1.54327 * 107.27046 * 1.28114 * 21 6 5 23 23 H 1.08993 * 110.72304 * 140.55572 * 22 21 6 24 24 O 1.42905 * 110.72108 * 263.65861 * 22 21 6 25 25 H 1.08998 * 109.47494 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47170 * 299.99826 * 1 2 3 27 27 H 1.09000 * 109.47156 * 59.99630 * 1 2 3 28 28 H 1.09004 * 109.47170 * 240.00174 * 2 1 3 29 29 H 1.09000 * 109.47156 * 120.00369 * 2 1 3 30 30 H 1.09001 * 110.49878 * 36.43760 * 5 3 2 31 31 H 1.08995 * 110.34630 * 274.03849 * 5 3 2 32 32 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 33 33 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 34 34 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 35 35 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 36 36 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 37 37 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 38 38 H 1.08992 * 109.47098 * 299.99158 * 12 11 10 39 39 H 1.09001 * 109.47583 * 60.00267 * 12 11 10 40 40 H 0.96998 * 120.00187 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.88721 * 120.69687 * 21 6 5 42 42 H 1.09005 * 109.87931 * 241.87029 * 21 6 5 43 43 H 0.96701 * 113.99763 * 298.54522 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5668 2.0220 -0.7927 5 6 1.8245 2.1058 1.3857 6 7 2.8410 3.1714 1.4531 7 6 2.7677 4.2798 2.2164 8 8 1.8002 4.4662 2.9235 9 6 3.8879 5.2876 2.1912 10 6 3.5575 6.4412 3.1404 11 6 4.6946 7.4646 3.1144 12 6 4.3645 8.6178 4.0641 13 6 5.4847 9.6256 4.0389 14 1 6.3458 9.4602 3.4083 15 6 5.4100 10.7592 4.8201 16 7 4.3607 10.9613 5.5869 17 14 6.7982 12.0087 4.7884 18 1 6.5308 13.0191 3.7335 19 1 6.8875 12.6829 6.1085 20 1 8.0799 11.3173 4.4981 21 6 3.9509 2.8219 0.5544 22 6 3.5859 1.4859 -0.1263 23 1 3.8871 1.4918 -1.1738 24 8 4.1840 0.3867 0.5638 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.9815 1.3809 2.1844 31 1 0.8234 2.5319 1.4503 32 1 4.0075 5.6727 1.1785 33 1 4.8141 4.8092 2.5098 34 1 2.6312 6.9196 2.8222 35 1 3.4382 6.0558 4.1529 36 1 5.6211 6.9865 3.4324 37 1 4.8136 7.8499 2.1017 38 1 3.4380 9.0961 3.7465 39 1 4.2459 8.2322 5.0767 40 1 4.3082 11.7587 6.1368 41 1 4.0770 3.5994 -0.1989 42 1 4.8703 2.7063 1.1285 43 1 5.1506 0.4106 0.5783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588661789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:44:30 Heat of formation + Delta-G solvation = -116.819074 kcal Electronic energy + Delta-G solvation = -20418.674328 eV Core-core repulsion = 17269.593514 eV Total energy + Delta-G solvation = -3149.080813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.43333 -38.50241 -35.67045 -34.85635 -34.32269 -32.59325 -30.30994 -29.46902 -28.37701 -25.87224 -24.33579 -22.56946 -22.03577 -20.45858 -19.99119 -19.33839 -17.87637 -16.95317 -16.13925 -16.08647 -15.44268 -15.11654 -15.01186 -14.50534 -14.43074 -14.13778 -13.58372 -13.30515 -13.00250 -12.63108 -12.57840 -12.45565 -12.11481 -11.96400 -11.66766 -11.58484 -11.25155 -11.14845 -10.97220 -10.79042 -10.56937 -10.51896 -10.47697 -10.39081 -9.76158 -9.59648 -9.20666 -8.96771 -8.77831 -8.29292 -5.93986 -3.96559 2.71771 2.86220 3.34604 3.40547 3.43728 3.66086 4.03939 4.10202 4.41042 4.49761 4.73306 4.81988 4.87376 5.00365 5.03958 5.14739 5.25398 5.32379 5.33292 5.41007 5.42989 5.47071 5.60394 5.70947 5.71048 5.84123 5.88885 6.03550 6.14055 6.15418 6.33416 6.56392 6.85584 7.03195 7.18014 7.21395 7.41887 7.75508 7.91790 8.07558 8.22596 8.49157 9.11157 9.66953 11.17386 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.045198 B = 0.002719 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.348209 B =10296.374759 C =10742.966390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.103 4.103 3 C -0.095 4.095 4 H 0.096 0.904 5 C 0.113 3.887 6 N -0.625 5.625 7 C 0.527 3.473 8 O -0.533 6.533 9 C -0.133 4.133 10 C -0.104 4.104 11 C -0.109 4.109 12 C 0.019 3.981 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.070 3.930 22 C 0.095 3.905 23 H 0.079 0.921 24 O -0.554 6.554 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -23.721 -15.233 28.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C -0.114 4.114 4 H 0.114 0.886 5 C -0.010 4.010 6 N -0.361 5.361 7 C 0.317 3.683 8 O -0.409 6.409 9 C -0.173 4.173 10 C -0.142 4.142 11 C -0.147 4.147 12 C -0.018 4.018 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.054 4.054 22 C 0.035 3.965 23 H 0.097 0.903 24 O -0.360 6.360 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.303 -23.566 -14.568 27.901 hybrid contribution 1.429 0.969 -0.109 1.730 sum -1.874 -22.596 -14.676 27.009 Atomic orbital electron populations 1.21847 0.95779 1.01794 1.02021 1.21257 0.95326 0.94372 1.03095 1.22591 0.92962 0.97960 0.97853 0.88625 1.22307 0.92992 0.89261 0.96415 1.48541 1.21350 1.21654 1.44575 1.20831 0.88675 0.80620 0.78134 1.90713 1.34091 1.75956 1.40095 1.21778 0.96562 0.95987 1.02948 1.21469 1.00160 0.94135 0.98434 1.21644 0.95932 0.96574 1.00550 1.19099 0.96804 0.91711 0.94148 1.21283 1.04772 1.05068 1.24692 0.92775 1.25048 0.95840 0.98183 0.95549 1.69978 1.28746 1.27489 1.27263 0.86606 0.82597 0.81571 0.77276 1.20714 1.21252 1.19938 1.22833 0.91032 0.97702 0.93810 1.22820 0.94204 0.84692 0.94794 0.90349 1.86525 1.24846 1.46021 1.78623 0.92588 0.92484 0.92761 0.91617 0.90805 0.91196 0.90426 0.89300 0.89326 0.91774 0.91773 0.93511 0.93507 0.96576 0.96565 0.93044 0.90420 0.90685 0.77130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.82 37.15 0.36 -0.65 16 2 C -0.10 -0.70 4.92 -26.73 -0.13 -0.84 16 3 C -0.09 -0.70 2.95 -88.35 -0.26 -0.96 16 4 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 5 C 0.11 1.19 5.86 -2.41 -0.01 1.18 16 6 N -0.62 -7.32 3.32 -170.38 -0.57 -7.89 16 7 C 0.53 8.07 7.85 -10.98 -0.09 7.99 16 8 O -0.53 -10.42 16.24 5.56 0.09 -10.33 16 9 C -0.13 -1.88 4.89 -27.88 -0.14 -2.02 16 10 C -0.10 -1.93 4.50 -26.73 -0.12 -2.05 16 11 C -0.11 -2.30 5.15 -26.73 -0.14 -2.43 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 14 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.78 13.29 55.43 0.74 -27.05 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.07 0.54 6.25 -3.06 -0.02 0.52 16 22 C 0.09 0.59 4.08 -24.89 -0.10 0.49 16 23 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 24 O -0.55 -3.65 12.26 -35.23 -0.43 -4.08 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.41 7.75 -51.93 -0.40 0.00 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.60 7.56 -51.93 -0.39 0.20 16 30 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 31 H 0.08 0.90 8.03 -51.93 -0.42 0.49 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.27 8.10 -51.93 -0.42 0.84 16 35 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.51 8.05 -51.93 -0.42 0.10 16 43 H 0.38 1.04 9.09 45.56 0.41 1.46 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -35.28 350.12 -8.19 -43.47 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -7.08 Total: -4.11 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.19 Total: -12.31 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.17 Total: -34.93 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.34 Total: -14.42 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.28 -8.19 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588661789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.347 kcal (2) G-P(sol) polarization free energy of solvation -35.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds