Wall clock time and date at job start Mon Mar 30 2020 19:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47296 * 2 1 4 4 H 1.08998 * 110.88732 * 308.88608 * 3 2 1 5 5 C 1.55126 * 110.90497 * 72.97665 * 3 2 1 6 6 N 1.47423 * 104.72422 * 155.27305 * 5 3 2 7 7 C 1.34777 * 125.65106 * 155.81451 * 6 5 3 8 8 O 1.21278 * 119.99854 * 359.72686 * 7 6 5 9 9 C 1.50703 * 120.00161 * 179.71993 * 7 6 5 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08009 * 120.00339 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00310 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99776 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00473 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47245 * 89.99913 * 17 15 13 19 19 H 1.48500 * 109.47049 * 210.00247 * 17 15 13 20 20 H 1.48499 * 109.47170 * 330.00074 * 17 15 13 21 21 C 1.47025 * 108.70465 * 335.55925 * 6 5 3 22 22 C 1.54327 * 107.27046 * 1.28114 * 21 6 5 23 23 H 1.08993 * 110.72304 * 140.55572 * 22 21 6 24 24 O 1.42905 * 110.72108 * 263.65861 * 22 21 6 25 25 H 1.08998 * 109.47494 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47170 * 299.99826 * 1 2 3 27 27 H 1.09000 * 109.47156 * 59.99630 * 1 2 3 28 28 H 1.09004 * 109.47170 * 240.00174 * 2 1 3 29 29 H 1.09000 * 109.47156 * 120.00369 * 2 1 3 30 30 H 1.09001 * 110.49878 * 36.43760 * 5 3 2 31 31 H 1.08995 * 110.34630 * 274.03849 * 5 3 2 32 32 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 33 33 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 34 34 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 35 35 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 36 36 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 37 37 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 38 38 H 1.08992 * 109.47098 * 299.99158 * 12 11 10 39 39 H 1.09001 * 109.47583 * 60.00267 * 12 11 10 40 40 H 0.96998 * 120.00187 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.88721 * 120.69687 * 21 6 5 42 42 H 1.09005 * 109.87931 * 241.87029 * 21 6 5 43 43 H 0.96701 * 113.99763 * 298.54522 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5668 2.0220 -0.7927 5 6 1.8245 2.1058 1.3857 6 7 2.8410 3.1714 1.4531 7 6 2.7677 4.2798 2.2164 8 8 1.8002 4.4662 2.9235 9 6 3.8879 5.2876 2.1912 10 6 3.5575 6.4412 3.1404 11 6 4.6946 7.4646 3.1144 12 6 4.3645 8.6178 4.0641 13 6 5.4847 9.6256 4.0389 14 1 6.3458 9.4602 3.4083 15 6 5.4100 10.7592 4.8201 16 7 4.3607 10.9613 5.5869 17 14 6.7982 12.0087 4.7884 18 1 6.5308 13.0191 3.7335 19 1 6.8875 12.6829 6.1085 20 1 8.0799 11.3173 4.4981 21 6 3.9509 2.8219 0.5544 22 6 3.5859 1.4859 -0.1263 23 1 3.8871 1.4918 -1.1738 24 8 4.1840 0.3867 0.5638 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.9815 1.3809 2.1844 31 1 0.8234 2.5319 1.4503 32 1 4.0075 5.6727 1.1785 33 1 4.8141 4.8092 2.5098 34 1 2.6312 6.9196 2.8222 35 1 3.4382 6.0558 4.1529 36 1 5.6211 6.9865 3.4324 37 1 4.8136 7.8499 2.1017 38 1 3.4380 9.0961 3.7465 39 1 4.2459 8.2322 5.0767 40 1 4.3082 11.7587 6.1368 41 1 4.0770 3.5994 -0.1989 42 1 4.8703 2.7063 1.1285 43 1 5.1506 0.4106 0.5783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588661789.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:44:28 Heat of formation + Delta-G solvation = -141.550045 kcal Electronic energy + Delta-G solvation = -20419.746743 eV Core-core repulsion = 17269.593514 eV Total energy + Delta-G solvation = -3150.153229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.32371 -39.43641 -36.68559 -36.23514 -35.05976 -34.58456 -31.73364 -30.45323 -29.21599 -27.47909 -25.49495 -23.74768 -23.08294 -21.76719 -21.05732 -20.31717 -18.53149 -18.43398 -17.88728 -17.14771 -16.58648 -16.27865 -16.05592 -15.75026 -15.37714 -14.89873 -14.69404 -14.52531 -14.01515 -13.88248 -13.70990 -13.52216 -13.34636 -13.18948 -13.04676 -12.82332 -12.57471 -12.34571 -12.17864 -12.15921 -11.84178 -11.72716 -11.40637 -11.39907 -11.30691 -11.21221 -11.01008 -10.72288 -10.55497 -9.72828 -8.18939 -6.31396 1.40241 1.42814 1.53866 1.56763 1.92886 2.41851 3.13737 3.19515 3.38925 3.56958 3.78057 3.85891 4.00726 4.09345 4.23505 4.31722 4.42447 4.49990 4.53516 4.56729 4.64480 4.68865 4.77072 4.80043 4.84539 4.89992 4.96592 5.04291 5.16131 5.19722 5.25710 5.32855 5.35127 5.36321 5.51704 5.55493 5.76712 5.87184 6.24467 6.43179 6.87102 6.94098 7.10765 7.38316 8.93486 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.045198 B = 0.002719 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.348209 B =10296.374759 C =10742.966390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 C -0.090 4.090 4 H 0.107 0.893 5 C 0.108 3.892 6 N -0.620 5.620 7 C 0.520 3.480 8 O -0.592 6.592 9 C -0.120 4.120 10 C -0.097 4.097 11 C -0.093 4.093 12 C 0.018 3.982 13 C -0.541 4.541 14 H 0.067 0.933 15 C -0.008 4.008 16 N -0.939 5.939 17 Si 0.971 3.029 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.258 1.258 21 C 0.060 3.940 22 C 0.103 3.897 23 H 0.111 0.889 24 O -0.571 6.571 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.063 0.937 38 H -0.016 1.016 39 H -0.017 1.017 40 H 0.263 0.737 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 -24.566 -17.884 30.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.134 4.134 3 C -0.109 4.109 4 H 0.125 0.875 5 C -0.015 4.015 6 N -0.354 5.354 7 C 0.311 3.689 8 O -0.473 6.473 9 C -0.159 4.159 10 C -0.135 4.135 11 C -0.131 4.131 12 C -0.019 4.019 13 C -0.579 4.579 14 H 0.086 0.914 15 C -0.205 4.205 16 N -0.580 5.580 17 Si 0.795 3.205 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.182 1.182 21 C -0.062 4.062 22 C 0.044 3.956 23 H 0.129 0.871 24 O -0.380 6.380 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.003 0.997 39 H 0.002 0.998 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -0.646 -24.461 -17.269 29.950 hybrid contribution 0.574 1.164 0.733 1.490 sum -0.072 -23.297 -16.535 28.569 Atomic orbital electron populations 1.21852 0.95785 1.02128 1.01706 1.21197 0.95299 0.93955 1.02968 1.22602 0.94635 0.97923 0.95705 0.87515 1.22376 0.91933 0.88771 0.98419 1.48581 1.22672 1.20452 1.43707 1.21012 0.88177 0.81686 0.78025 1.90690 1.36236 1.77510 1.42847 1.21634 0.96968 0.94104 1.03188 1.21261 0.98399 0.95233 0.98581 1.21432 0.97149 0.94912 0.99603 1.19062 0.95295 0.93655 0.93905 1.21751 1.05492 1.05701 1.24924 0.91449 1.26122 0.98776 1.00721 0.94920 1.70140 1.31211 1.28405 1.28202 0.85358 0.79199 0.78477 0.77462 1.19653 1.20996 1.18221 1.23237 0.89956 0.99246 0.93799 1.22844 0.92868 0.83749 0.96150 0.87120 1.86499 1.26594 1.46034 1.78880 0.91963 0.93879 0.91999 0.90234 0.92268 0.92460 0.92424 0.86316 0.86664 0.93885 0.94084 0.92016 0.91854 0.99738 0.99815 0.92852 0.88272 0.89255 0.75121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.82 71.98 0.71 -1.20 16 2 C -0.10 -1.17 4.92 30.59 0.15 -1.02 16 3 C -0.09 -1.16 2.95 -9.32 -0.03 -1.18 16 4 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 5 C 0.11 2.27 5.86 86.93 0.51 2.78 16 6 N -0.62 -13.76 3.32 -811.35 -2.70 -16.46 16 7 C 0.52 15.81 7.85 87.66 0.69 16.49 16 8 O -0.59 -24.31 16.24 -3.02 -0.05 -24.36 16 9 C -0.12 -3.16 4.89 29.85 0.15 -3.01 16 10 C -0.10 -3.63 4.50 30.59 0.14 -3.50 16 11 C -0.09 -3.87 5.15 30.59 0.16 -3.71 16 12 C 0.02 1.00 4.97 29.85 0.15 1.15 16 13 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 14 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 15 C -0.01 -0.50 5.46 84.65 0.46 -0.03 16 16 N -0.94 -59.70 13.29 21.45 0.28 -59.41 16 17 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 21 C 0.06 0.71 6.25 86.73 0.54 1.25 16 22 C 0.10 0.93 4.08 31.79 0.13 1.06 16 23 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 24 O -0.57 -5.82 12.26 -148.98 -1.83 -7.65 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.04 0.63 7.75 -2.39 -0.02 0.61 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.91 7.56 -2.39 -0.02 0.89 16 30 H 0.06 1.34 7.91 -2.39 -0.02 1.32 16 31 H 0.06 1.43 8.03 -2.39 -0.02 1.41 16 32 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 35 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 36 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 40 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 0.86 8.05 -2.38 -0.02 0.84 16 43 H 0.40 0.83 9.09 -74.06 -0.67 0.15 16 Total: -1.00 -80.11 350.12 2.01 -78.11 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.29 Total: 5.05 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 3.98 Total: -22.27 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -2.41 Total: -75.87 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.88 Total: -32.01 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -80.11 2.01 -78.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588661789.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.445 kcal (2) G-P(sol) polarization free energy of solvation -80.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds