Wall clock time and date at job start Mon Mar 30 2020 19:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46526 * 2 1 4 4 H 1.08993 * 109.46897 * 55.00083 * 3 2 1 5 5 C 1.53000 * 109.47237 * 294.99613 * 3 2 1 6 6 C 1.53000 * 109.46827 * 174.99872 * 3 2 1 7 7 C 1.52998 * 109.47106 * 185.00222 * 6 3 2 8 8 C 1.50700 * 109.46904 * 180.02562 * 7 6 3 9 9 O 1.21277 * 120.00203 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99589 * 179.97438 * 8 7 6 11 11 C 1.47022 * 125.65322 * 0.02783 * 10 8 7 12 12 C 1.54322 * 107.27482 * 178.89199 * 11 10 8 13 13 C 1.55157 * 102.93912 * 337.80443 * 12 11 10 14 14 O 1.42900 * 111.00520 * 277.38901 * 13 12 11 15 15 C 1.50702 * 111.00344 * 153.57728 * 13 12 11 16 16 H 1.08002 * 120.00299 * 241.45696 * 15 13 12 17 17 C 1.37884 * 119.99942 * 61.17254 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.47424 * 125.64766 * 179.97438 * 10 8 7 24 24 H 1.09001 * 109.46928 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47696 * 299.99979 * 1 2 3 26 26 H 1.09000 * 109.47641 * 60.00419 * 1 2 3 27 27 H 1.08996 * 109.47424 * 240.00443 * 2 1 3 28 28 H 1.08991 * 109.46885 * 119.99601 * 2 1 3 29 29 H 1.09003 * 109.46826 * 60.00200 * 5 3 2 30 30 H 1.08994 * 109.47150 * 179.97438 * 5 3 2 31 31 H 1.08994 * 109.47472 * 300.00607 * 5 3 2 32 32 H 1.09008 * 109.46853 * 64.99917 * 6 3 2 33 33 H 1.09002 * 109.47323 * 305.00129 * 6 3 2 34 34 H 1.08994 * 109.47163 * 59.99667 * 7 6 3 35 35 H 1.09002 * 109.46770 * 299.99612 * 7 6 3 36 36 H 1.09003 * 109.88076 * 59.47030 * 11 10 8 37 37 H 1.09003 * 109.88029 * 298.30888 * 11 10 8 38 38 H 1.08995 * 110.71729 * 219.44160 * 12 11 10 39 39 H 1.08996 * 110.71909 * 96.16437 * 12 11 10 40 40 H 0.96704 * 113.99783 * 295.41666 * 14 13 12 41 41 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 42 42 H 1.09007 * 110.36818 * 85.33903 * 23 10 8 43 43 H 1.09006 * 110.37032 * 323.01581 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5647 1.4445 0.1258 7 6 4.0643 2.8852 0.2512 8 6 5.5662 2.8871 0.3745 9 8 6.1769 1.8393 0.3635 10 7 6.2308 4.0532 0.4968 11 6 5.6186 5.3896 0.5250 12 6 6.7596 6.4127 0.7065 13 6 7.8927 5.5610 1.3377 14 8 7.7117 5.4333 2.7494 15 6 9.2462 6.1424 1.0200 16 1 9.9631 5.5648 0.4553 17 6 9.5674 7.4141 1.4453 18 7 8.6945 8.1175 2.1330 19 14 11.2424 8.1376 1.0450 20 1 11.1735 8.8574 -0.2521 21 1 11.6411 9.0854 2.1164 22 1 12.2442 7.0454 0.9524 23 6 7.6920 4.1999 0.6257 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 0.5488 2.1252 -1.3970 30 1 1.9980 3.1544 -1.3072 31 1 2.0697 1.5876 -2.1492 32 1 4.0028 0.9838 -0.7597 33 1 3.8570 0.8802 1.0114 34 1 3.6261 3.3459 1.1365 35 1 3.7721 3.4495 -0.6344 36 1 4.9210 5.4602 1.3596 37 1 5.0973 5.5784 -0.4135 38 1 6.4565 7.2126 1.3819 39 1 7.0718 6.8170 -0.2564 40 1 7.7792 6.2687 3.2318 41 1 8.9206 9.0120 2.4326 42 1 8.1602 4.2140 -0.3586 43 1 8.1027 3.3914 1.2305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:45:45 Heat of formation + Delta-G solvation = -117.277042 kcal Electronic energy + Delta-G solvation = -21180.624781 eV Core-core repulsion = 18031.524109 eV Total energy + Delta-G solvation = -3149.100672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.53248 -37.65399 -36.79150 -34.26377 -32.27528 -32.23212 -29.89592 -28.87280 -28.14837 -26.07957 -24.83890 -22.79409 -21.75618 -19.97385 -19.68097 -18.59058 -17.21851 -16.57675 -15.77681 -15.21621 -15.03842 -14.94721 -14.48408 -14.12427 -13.92441 -13.59702 -13.19367 -13.05103 -12.58027 -12.26829 -12.16755 -11.92823 -11.85459 -11.68118 -11.55840 -11.37262 -11.29271 -10.96781 -10.89158 -10.64136 -10.61056 -10.59149 -10.49764 -10.46765 -10.03452 -9.42073 -9.25336 -8.70364 -8.23133 -7.95293 -6.30192 -4.38415 3.14621 3.18493 3.26303 3.30612 3.61350 4.25494 4.62978 4.75465 4.78066 4.96113 5.10421 5.15513 5.30062 5.33514 5.43171 5.46929 5.55756 5.66080 5.69679 5.74946 5.79677 5.85389 5.88980 5.94737 6.00336 6.01889 6.04816 6.17351 6.31820 6.36238 6.42380 6.45004 6.67434 6.90078 6.99129 7.30100 7.34235 7.71731 8.00200 8.19301 8.63948 8.71329 9.29215 9.38397 10.76955 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.048974 B = 0.003467 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.592688 B = 8073.496553 C = 8229.576369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.070 0.930 5 C -0.151 4.151 6 C -0.098 4.098 7 C -0.136 4.136 8 C 0.520 3.480 9 O -0.558 6.558 10 N -0.609 5.609 11 C 0.099 3.901 12 C -0.136 4.136 13 C 0.247 3.753 14 O -0.583 6.583 15 C -0.535 4.535 16 H 0.064 0.936 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.119 3.881 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.381 0.619 41 H 0.268 0.732 42 H 0.070 0.930 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.058 -6.653 -4.454 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.208 4.208 6 C -0.136 4.136 7 C -0.175 4.175 8 C 0.309 3.691 9 O -0.438 6.438 10 N -0.341 5.341 11 C -0.024 4.024 12 C -0.175 4.175 13 C 0.206 3.794 14 O -0.391 6.391 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.131 4.131 18 N -0.534 5.534 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.002 4.002 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.230 0.770 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.879 -7.728 -4.543 16.522 hybrid contribution 0.903 1.312 -0.064 1.594 sum -12.976 -6.416 -4.607 15.191 Atomic orbital electron populations 1.21825 0.96118 1.01309 1.01803 1.21564 0.95578 0.96475 1.02122 1.21208 0.95509 0.96114 0.98392 0.91199 1.21947 1.00987 1.00650 0.97243 1.21386 0.93787 0.95109 1.03299 1.21684 0.92491 0.99532 1.03835 1.20296 0.89743 0.82479 0.76595 1.90645 1.70172 1.30940 1.52039 1.48662 1.09047 1.05820 1.70589 1.22175 0.97610 0.83077 0.99489 1.23165 0.94881 0.97251 1.02155 1.19618 0.92324 0.88090 0.79319 1.86139 1.95133 1.37538 1.20326 1.21455 0.99804 1.00108 1.36003 0.91729 1.24998 0.97551 0.96489 0.94018 1.69721 1.34796 1.11781 1.37146 0.86412 0.83581 0.78920 0.78056 1.20475 1.21019 1.19679 1.22349 0.78758 0.99447 0.99676 0.93065 0.92853 0.92572 0.92010 0.91958 0.92705 0.92470 0.92717 0.91332 0.91293 0.89354 0.89267 0.92447 0.92946 0.89523 0.91421 0.76960 0.92229 0.91172 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.12 -1.08 5.40 -26.73 -0.14 -1.22 16 3 C -0.09 -0.92 2.39 -90.62 -0.22 -1.13 16 4 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.15 -1.35 8.70 37.16 0.32 -1.03 16 6 C -0.10 -1.23 3.97 -26.73 -0.11 -1.34 16 7 C -0.14 -1.86 4.65 -27.88 -0.13 -1.99 16 8 C 0.52 9.88 7.85 -10.98 -0.09 9.79 16 9 O -0.56 -12.42 16.24 5.56 0.09 -12.33 16 10 N -0.61 -12.17 3.33 -170.51 -0.57 -12.74 16 11 C 0.10 1.78 6.49 -3.06 -0.02 1.76 16 12 C -0.14 -2.89 5.38 -24.90 -0.13 -3.03 16 13 C 0.25 5.95 0.88 -89.62 -0.08 5.87 16 14 O -0.58 -14.82 13.18 -35.23 -0.46 -15.29 16 15 C -0.54 -13.89 8.27 -34.44 -0.28 -14.18 16 16 H 0.06 1.68 7.79 -52.49 -0.41 1.27 16 17 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 18 N -0.90 -22.79 10.73 55.43 0.59 -22.19 16 19 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.12 2.71 6.08 -2.53 -0.02 2.69 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.43 6.57 -51.93 -0.34 0.09 16 30 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.93 8.10 -51.92 -0.42 0.50 16 33 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.07 6.57 -51.93 -0.34 0.73 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 39 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 40 H 0.38 9.62 7.51 45.56 0.34 9.96 16 41 H 0.27 6.54 8.31 -40.82 -0.34 6.21 16 42 H 0.07 1.55 8.03 -51.92 -0.42 1.13 16 43 H 0.07 1.68 8.04 -51.93 -0.42 1.27 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -28.23 340.31 -7.72 -35.95 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.85 Total: 9.30 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.63 Total: -2.87 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.03 Total: -34.93 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.37 Total: -27.62 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.23 -7.72 -35.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.331 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds