Wall clock time and date at job start Mon Mar 30 2020 19:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45205 * 109.47182 * 2 1 4 4 C 1.34222 * 116.99834 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00560 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99639 * 180.02562 * 4 3 2 7 7 C 1.52997 * 112.85230 * 309.66596 * 6 4 3 8 8 C 1.53781 * 113.61432 * 80.86573 * 6 4 3 9 9 C 1.54048 * 86.99090 * 140.01774 * 8 6 4 10 10 N 1.46897 * 113.69919 * 220.01084 * 9 8 6 11 11 C 1.46897 * 111.00006 * 252.53147 * 10 9 8 12 12 H 1.09006 * 109.47220 * 34.99792 * 11 10 9 13 13 C 1.50702 * 109.47098 * 154.99767 * 11 10 9 14 14 H 1.08001 * 120.00159 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99960 * 180.02562 * 13 11 10 16 16 N 1.31517 * 119.99977 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00338 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46905 * 89.99478 * 17 15 13 19 19 H 1.48494 * 109.47061 * 210.00004 * 17 15 13 20 20 H 1.48502 * 109.46625 * 330.00038 * 17 15 13 21 21 C 1.52997 * 109.47136 * 274.99767 * 11 10 9 22 22 C 1.53006 * 109.47273 * 64.99864 * 21 11 10 23 23 C 1.53782 * 87.07528 * 334.56795 * 9 8 6 24 24 H 1.09006 * 109.46666 * 299.99447 * 1 2 3 25 25 H 1.08997 * 109.47527 * 59.99339 * 1 2 3 26 26 H 1.08998 * 109.47151 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46666 * 240.00552 * 2 1 3 28 28 H 1.08997 * 109.47527 * 120.00660 * 2 1 3 29 29 H 1.09002 * 109.47153 * 50.33193 * 7 6 4 30 30 H 1.09001 * 109.46832 * 290.33384 * 7 6 4 31 31 H 1.09004 * 109.47261 * 170.33365 * 7 6 4 32 32 H 1.08999 * 113.61148 * 254.61365 * 8 6 4 33 33 H 1.09001 * 113.61586 * 25.51238 * 8 6 4 34 34 H 1.09000 * 113.61500 * 89.10751 * 9 8 6 35 35 H 1.00899 * 111.00243 * 128.57207 * 10 9 8 36 36 H 0.96996 * 120.00573 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.47146 * 184.99754 * 21 11 10 38 38 H 1.09002 * 109.47048 * 304.99855 * 21 11 10 39 39 H 1.09004 * 109.47055 * 300.00541 * 22 21 11 40 40 H 1.09004 * 109.46589 * 60.00146 * 22 21 11 41 41 H 1.08996 * 109.47201 * 180.02562 * 22 21 11 42 42 H 1.09002 * 113.61607 * 270.88086 * 23 9 8 43 43 H 1.08999 * 113.61621 * 139.97470 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 3.3157 3.8311 -1.0845 8 6 3.9501 3.5913 1.3916 9 6 5.3323 4.1535 1.0088 10 7 6.3079 4.1202 2.1065 11 6 6.5593 5.4701 2.6285 12 1 5.6393 6.0532 2.5863 13 6 7.0298 5.3767 4.0572 14 1 7.1315 4.4112 4.5302 15 6 7.3295 6.5240 4.7607 16 7 7.2053 7.6999 4.1848 17 14 7.9134 6.4083 6.5313 18 1 9.3944 6.3023 6.5582 19 1 7.4905 7.6237 7.2723 20 1 7.3194 5.2068 7.1707 21 6 7.6349 6.1525 1.7809 22 6 7.1086 6.3598 0.3593 23 6 5.4578 2.9683 0.0370 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.2281 3.7794 -1.0329 30 1 3.6496 3.4899 -2.0644 31 1 3.6383 4.8606 -0.9288 32 1 3.1882 4.3584 1.5297 33 1 3.9825 2.8732 2.2109 34 1 5.2872 5.1226 0.5119 35 1 7.1672 3.6800 1.8135 36 1 7.4164 8.5070 4.6795 37 1 7.8851 7.1183 2.2201 38 1 8.5258 5.5253 1.7507 39 1 6.8583 5.3940 -0.0799 40 1 6.2177 6.9870 0.3896 41 1 7.8750 6.8455 -0.2447 42 1 5.9017 2.0801 0.4866 43 1 5.9123 3.2328 -0.9178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602609313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:49:17 Heat of formation + Delta-G solvation = -76.173374 kcal Electronic energy + Delta-G solvation = -21416.767699 eV Core-core repulsion = 18269.449416 eV Total energy + Delta-G solvation = -3147.318284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.87497 -38.83957 -36.51008 -35.55544 -32.26838 -31.80140 -30.43460 -28.58678 -26.39268 -25.48030 -24.92812 -23.13576 -22.48130 -20.58724 -19.83628 -18.53443 -17.33366 -16.53808 -16.53475 -16.14329 -15.15234 -14.60020 -14.51140 -14.06281 -13.78481 -13.45711 -13.21716 -13.05045 -12.83547 -12.59708 -12.31037 -12.08819 -11.85544 -11.74342 -11.57559 -11.27933 -11.13249 -10.98344 -10.83089 -10.61462 -10.58685 -10.55872 -10.22842 -10.08841 -10.01527 -9.74519 -9.55120 -8.91607 -8.32042 -7.18591 -5.96643 -3.99652 2.29031 2.67894 3.34008 3.40515 3.45472 4.45238 4.46944 4.63049 4.74793 4.81169 4.88771 4.93867 5.08771 5.16807 5.33722 5.41511 5.48290 5.57557 5.70960 5.72592 5.78044 5.83460 5.97338 6.06181 6.11982 6.12982 6.14852 6.30276 6.38634 6.44747 6.49732 6.63513 6.82228 6.97375 7.24644 7.44401 7.78005 7.83947 7.91832 8.32120 8.56903 8.65291 9.08175 9.65541 11.09729 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025461 B = 0.004171 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.445464 B = 6711.922712 C = 7297.232718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.356 6.356 4 C 0.481 3.519 5 O -0.510 6.510 6 C -0.085 4.085 7 C -0.126 4.126 8 C -0.104 4.104 9 C 0.061 3.939 10 N -0.670 5.670 11 C 0.217 3.783 12 H 0.035 0.965 13 C -0.495 4.495 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.121 4.121 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.328 0.672 36 H 0.259 0.741 37 H 0.099 0.901 38 H 0.033 0.967 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.098 0.902 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.251 -9.253 -11.156 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 O -0.273 6.273 4 C 0.324 3.676 5 O -0.397 6.397 6 C -0.087 4.087 7 C -0.183 4.183 8 C -0.143 4.143 9 C -0.049 4.049 10 N -0.300 5.300 11 C 0.109 3.891 12 H 0.053 0.947 13 C -0.533 4.533 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.724 3.276 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.191 4.191 22 C -0.212 4.212 23 C -0.159 4.159 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.117 0.883 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.503 -9.528 -10.615 17.714 hybrid contribution 0.885 0.184 0.215 0.929 sum -9.618 -9.344 -10.401 16.970 Atomic orbital electron populations 1.21795 0.92752 1.02769 1.03548 1.22995 0.95301 0.80789 1.02423 1.86532 1.24951 1.31791 1.83992 1.23680 0.80137 0.92400 0.71360 1.90631 1.60512 1.43014 1.45544 1.21846 0.97276 0.88980 1.00603 1.21595 1.01227 0.99233 0.96244 1.23195 0.98879 0.99655 0.92580 1.23162 0.93847 0.96430 0.91508 1.60844 1.14092 1.23873 1.31143 1.19227 0.93964 0.82885 0.92984 0.94734 1.21188 1.43038 0.92832 0.96287 0.91995 1.24939 0.95928 0.95389 0.98227 1.69868 1.49809 0.97358 1.36624 0.86537 0.78805 0.77407 0.84876 1.20889 1.21424 1.19916 1.22299 0.99189 1.04839 0.92756 1.22094 1.00094 0.99710 0.99328 1.23341 0.91518 1.00687 1.00318 0.91366 0.91570 0.90440 0.91518 0.91312 0.91211 0.92191 0.90694 0.90784 0.89156 0.89839 0.85348 0.93115 0.88303 0.94820 0.93875 0.93675 0.94848 0.88320 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.62 6.19 37.16 0.23 0.85 16 3 O -0.36 -4.69 9.91 -39.24 -0.39 -5.08 16 4 C 0.48 7.18 7.02 36.01 0.25 7.44 16 5 O -0.51 -8.81 15.66 -18.75 -0.29 -9.11 16 6 C -0.09 -1.19 1.32 -154.84 -0.20 -1.39 16 7 C -0.13 -1.42 9.01 37.16 0.33 -1.09 16 8 C -0.10 -1.66 7.02 -25.78 -0.18 -1.84 16 9 C 0.06 1.04 2.14 -66.76 -0.14 0.90 16 10 N -0.67 -13.78 6.25 -99.96 -0.62 -14.41 16 11 C 0.22 5.25 2.17 -68.87 -0.15 5.10 16 12 H 0.03 0.92 7.84 -51.93 -0.41 0.52 16 13 C -0.49 -13.51 8.84 -34.44 -0.30 -13.81 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 16 N -0.90 -25.24 11.29 55.43 0.63 -24.61 16 17 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.15 -3.45 5.24 -26.73 -0.14 -3.59 16 22 C -0.16 -2.90 8.48 37.16 0.32 -2.59 16 23 C -0.12 -1.80 6.53 -25.91 -0.17 -1.97 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.83 7.33 -51.93 -0.38 0.45 16 32 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.09 1.57 8.09 -51.93 -0.42 1.15 16 34 H 0.08 1.43 4.62 -51.93 -0.24 1.19 16 35 H 0.33 6.53 8.23 -39.29 -0.32 6.20 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 37 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 38 H 0.03 0.76 8.04 -51.93 -0.42 0.34 16 39 H 0.04 0.73 5.59 -51.93 -0.29 0.44 16 40 H 0.04 0.84 7.90 -51.93 -0.41 0.43 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 1.61 7.46 -51.93 -0.39 1.22 16 43 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -29.37 341.78 -7.76 -37.13 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.34 Total: 5.82 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 0.13 Total: -11.32 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.00 Total: -39.02 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.68 Total: -14.18 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.37 -7.76 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.040 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds