Wall clock time and date at job start Mon Mar 30 2020 19:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45205 * 109.47182 * 2 1 4 4 C 1.34222 * 116.99834 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00560 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99639 * 180.02562 * 4 3 2 7 7 C 1.52997 * 112.85230 * 309.66596 * 6 4 3 8 8 C 1.53781 * 113.61432 * 80.86573 * 6 4 3 9 9 C 1.54048 * 86.99090 * 140.01774 * 8 6 4 10 10 N 1.46897 * 113.69919 * 220.01084 * 9 8 6 11 11 C 1.46897 * 111.00006 * 252.53147 * 10 9 8 12 12 H 1.09006 * 109.47220 * 34.99792 * 11 10 9 13 13 C 1.50702 * 109.47098 * 154.99767 * 11 10 9 14 14 H 1.08001 * 120.00159 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99960 * 180.02562 * 13 11 10 16 16 N 1.31517 * 119.99977 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00338 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46905 * 89.99478 * 17 15 13 19 19 H 1.48494 * 109.47061 * 210.00004 * 17 15 13 20 20 H 1.48502 * 109.46625 * 330.00038 * 17 15 13 21 21 C 1.52997 * 109.47136 * 274.99767 * 11 10 9 22 22 C 1.53006 * 109.47273 * 64.99864 * 21 11 10 23 23 C 1.53782 * 87.07528 * 334.56795 * 9 8 6 24 24 H 1.09006 * 109.46666 * 299.99447 * 1 2 3 25 25 H 1.08997 * 109.47527 * 59.99339 * 1 2 3 26 26 H 1.08998 * 109.47151 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46666 * 240.00552 * 2 1 3 28 28 H 1.08997 * 109.47527 * 120.00660 * 2 1 3 29 29 H 1.09002 * 109.47153 * 50.33193 * 7 6 4 30 30 H 1.09001 * 109.46832 * 290.33384 * 7 6 4 31 31 H 1.09004 * 109.47261 * 170.33365 * 7 6 4 32 32 H 1.08999 * 113.61148 * 254.61365 * 8 6 4 33 33 H 1.09001 * 113.61586 * 25.51238 * 8 6 4 34 34 H 1.09000 * 113.61500 * 89.10751 * 9 8 6 35 35 H 1.00899 * 111.00243 * 128.57207 * 10 9 8 36 36 H 0.96996 * 120.00573 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.47146 * 184.99754 * 21 11 10 38 38 H 1.09002 * 109.47048 * 304.99855 * 21 11 10 39 39 H 1.09004 * 109.47055 * 300.00541 * 22 21 11 40 40 H 1.09004 * 109.46589 * 60.00146 * 22 21 11 41 41 H 1.08996 * 109.47201 * 180.02562 * 22 21 11 42 42 H 1.09002 * 113.61607 * 270.88086 * 23 9 8 43 43 H 1.08999 * 113.61621 * 139.97470 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 3.3157 3.8311 -1.0845 8 6 3.9501 3.5913 1.3916 9 6 5.3323 4.1535 1.0088 10 7 6.3079 4.1202 2.1065 11 6 6.5593 5.4701 2.6285 12 1 5.6393 6.0532 2.5863 13 6 7.0298 5.3767 4.0572 14 1 7.1315 4.4112 4.5302 15 6 7.3295 6.5240 4.7607 16 7 7.2053 7.6999 4.1848 17 14 7.9134 6.4083 6.5313 18 1 9.3944 6.3023 6.5582 19 1 7.4905 7.6237 7.2723 20 1 7.3194 5.2068 7.1707 21 6 7.6349 6.1525 1.7809 22 6 7.1086 6.3598 0.3593 23 6 5.4578 2.9683 0.0370 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.2281 3.7794 -1.0329 30 1 3.6496 3.4899 -2.0644 31 1 3.6383 4.8606 -0.9288 32 1 3.1882 4.3584 1.5297 33 1 3.9825 2.8732 2.2109 34 1 5.2872 5.1226 0.5119 35 1 7.1672 3.6800 1.8135 36 1 7.4164 8.5070 4.6795 37 1 7.8851 7.1183 2.2201 38 1 8.5258 5.5253 1.7507 39 1 6.8583 5.3940 -0.0799 40 1 6.2177 6.9870 0.3896 41 1 7.8750 6.8455 -0.2447 42 1 5.9017 2.0801 0.4866 43 1 5.9123 3.2328 -0.9178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602609313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:49:15 Heat of formation + Delta-G solvation = -93.261374 kcal Electronic energy + Delta-G solvation = -21417.508691 eV Core-core repulsion = 18269.449416 eV Total energy + Delta-G solvation = -3148.059275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.04958 -40.09324 -37.75401 -37.16137 -34.17017 -32.69884 -31.91207 -29.96470 -28.07601 -26.77099 -26.06843 -24.70112 -23.57397 -21.84478 -21.66878 -19.81597 -18.48254 -18.27306 -17.63039 -17.55583 -16.76066 -16.33753 -15.71627 -15.28626 -15.12465 -14.83448 -14.63137 -14.33428 -13.89274 -13.71092 -13.39141 -13.26662 -13.18431 -13.08459 -12.90615 -12.76660 -12.59043 -12.53596 -12.30506 -12.25208 -12.01272 -11.85888 -11.64259 -11.53133 -11.50504 -11.33994 -11.09101 -10.77057 -10.40498 -8.84901 -8.05955 -6.16121 1.11816 1.42664 1.43895 1.54311 1.66686 2.45987 3.21314 3.31033 3.48835 3.65172 3.86924 3.88853 3.99352 4.00216 4.08797 4.33605 4.48464 4.49779 4.57743 4.71520 4.73533 4.78321 4.81906 4.86793 4.90970 4.92513 5.02855 5.07505 5.13309 5.15301 5.17873 5.29214 5.34546 5.44820 5.49425 5.63358 5.77746 5.93208 6.37425 6.70394 6.73861 6.90487 7.00612 7.53447 8.98289 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025461 B = 0.004171 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.445464 B = 6711.922712 C = 7297.232718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.356 6.356 4 C 0.482 3.518 5 O -0.538 6.538 6 C -0.074 4.074 7 C -0.123 4.123 8 C -0.108 4.108 9 C 0.056 3.944 10 N -0.678 5.678 11 C 0.226 3.774 12 H 0.005 0.995 13 C -0.517 4.517 14 H 0.049 0.951 15 C 0.012 3.988 16 N -0.918 5.918 17 Si 0.954 3.046 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.113 4.113 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.332 0.668 36 H 0.260 0.740 37 H 0.065 0.935 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.082 0.918 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 -9.697 -12.445 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.273 6.273 4 C 0.326 3.674 5 O -0.428 6.428 6 C -0.075 4.075 7 C -0.180 4.180 8 C -0.146 4.146 9 C -0.054 4.054 10 N -0.308 5.308 11 C 0.118 3.882 12 H 0.023 0.977 13 C -0.556 4.556 14 H 0.067 0.933 15 C -0.186 4.186 16 N -0.558 5.558 17 Si 0.780 3.220 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.199 1.199 21 C -0.185 4.185 22 C -0.201 4.201 23 C -0.150 4.150 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.150 0.850 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.347 -9.978 -11.914 19.242 hybrid contribution 1.085 0.260 0.628 1.280 sum -10.262 -9.718 -11.286 18.087 Atomic orbital electron populations 1.21816 0.90203 1.04377 1.03760 1.23313 0.97293 0.79440 1.02359 1.86525 1.23844 1.33513 1.83396 1.23817 0.80601 0.92345 0.70625 1.90620 1.61251 1.43937 1.46987 1.21803 0.96708 0.88981 1.00032 1.21636 1.01764 0.98760 0.95822 1.23136 0.98528 0.99524 0.93437 1.23240 0.93339 0.97586 0.91225 1.60707 1.14857 1.21857 1.33353 1.18929 0.92719 0.84335 0.92251 0.97698 1.21516 1.43452 0.92373 0.98260 0.93295 1.25627 0.96074 0.95148 1.01785 1.69989 1.50266 0.97736 1.37809 0.85623 0.78457 0.77302 0.80591 1.20278 1.20932 1.19913 1.22108 0.98748 1.02602 0.95013 1.21961 1.00318 1.01075 0.96749 1.23233 0.92565 0.98783 1.00459 0.91578 0.90882 0.88136 0.91066 0.92002 0.90210 0.90541 0.90163 0.90129 0.91218 0.89344 0.85005 0.93110 0.91643 0.95107 0.91749 0.93878 0.93103 0.89926 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 10.29 71.98 0.74 -1.11 16 2 C 0.05 0.97 6.19 71.98 0.45 1.42 16 3 O -0.36 -8.91 9.91 -51.34 -0.51 -9.42 16 4 C 0.48 13.87 7.02 71.24 0.50 14.37 16 5 O -0.54 -18.34 15.66 21.96 0.34 -18.00 16 6 C -0.07 -1.94 1.32 -52.40 -0.07 -2.00 16 7 C -0.12 -2.42 9.01 71.98 0.65 -1.78 16 8 C -0.11 -3.38 7.02 31.21 0.22 -3.16 16 9 C 0.06 1.87 2.14 45.53 0.10 1.96 16 10 N -0.68 -28.09 6.25 -470.15 -2.94 -31.03 16 11 C 0.23 11.13 2.17 44.17 0.10 11.23 16 12 H 0.01 0.28 7.84 -2.38 -0.02 0.26 16 13 C -0.52 -28.85 8.84 25.60 0.23 -28.63 16 14 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 15 C 0.01 0.66 5.29 84.65 0.45 1.11 16 16 N -0.92 -52.45 11.29 21.45 0.24 -52.21 16 17 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 21 C -0.14 -6.64 5.24 30.60 0.16 -6.48 16 22 C -0.14 -5.16 8.48 71.98 0.61 -4.55 16 23 C -0.11 -3.18 6.53 31.12 0.20 -2.98 16 24 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 1.34 8.13 -2.38 -0.02 1.32 16 28 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.08 1.43 7.92 -2.39 -0.02 1.42 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.53 7.33 -2.38 -0.02 1.51 16 32 H 0.08 2.38 8.10 -2.39 -0.02 2.37 16 33 H 0.07 2.47 8.09 -2.39 -0.02 2.45 16 34 H 0.09 2.89 4.62 -2.39 -0.01 2.88 16 35 H 0.33 13.20 8.23 -89.69 -0.74 12.46 16 36 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.07 3.46 5.95 -2.39 -0.01 3.45 16 38 H 0.03 1.38 8.04 -2.39 -0.02 1.36 16 39 H 0.06 2.02 5.59 -2.39 -0.01 2.01 16 40 H 0.04 1.55 7.90 -2.39 -0.02 1.53 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.08 2.65 7.46 -2.39 -0.02 2.63 16 43 H 0.09 2.21 8.10 -2.39 -0.02 2.19 16 Total: -1.00 -63.89 341.78 3.74 -60.15 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.25 Total: 24.65 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 4.33 Total: -20.59 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -2.70 Total: -83.24 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.17 Total: -27.41 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -63.89 3.74 -60.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602609313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.109 kcal (2) G-P(sol) polarization free energy of solvation -63.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds