Wall clock time and date at job start Mon Mar 30 2020 19:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47372 * 2 1 4 4 O 1.45200 * 109.47169 * 179.97438 * 3 2 1 5 5 C 1.34233 * 117.00134 * 179.97438 * 4 3 2 6 6 O 1.20818 * 119.99805 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00011 * 179.97438 * 5 4 3 8 8 H 1.08996 * 109.47473 * 300.00667 * 7 5 4 9 9 C 1.53005 * 109.46736 * 60.00845 * 7 5 4 10 10 N 1.46899 * 109.47058 * 180.02562 * 7 5 4 11 11 C 1.46897 * 110.99977 * 175.00462 * 10 7 5 12 12 C 1.50706 * 109.47018 * 288.68827 * 11 10 7 13 13 H 1.07993 * 120.00107 * 357.19587 * 12 11 10 14 14 C 1.37883 * 119.99999 * 177.20156 * 12 11 10 15 15 N 1.31513 * 119.99830 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99936 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47017 * 89.99792 * 16 14 12 18 18 H 1.48500 * 109.46959 * 209.99743 * 16 14 12 19 19 H 1.48500 * 109.47053 * 329.99529 * 16 14 12 20 20 C 1.46900 * 111.00258 * 298.95665 * 10 7 5 21 21 C 1.52993 * 109.47162 * 164.11787 * 20 10 7 22 22 C 1.53002 * 117.51665 * 116.41865 * 21 20 10 23 23 C 1.52995 * 60.00104 * 107.47877 * 22 21 20 24 24 H 1.09004 * 109.46837 * 300.00361 * 1 2 3 25 25 H 1.08999 * 109.46896 * 59.99814 * 1 2 3 26 26 H 1.08998 * 109.47714 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47159 * 239.99133 * 2 1 3 28 28 H 1.09004 * 109.46784 * 119.99696 * 2 1 3 29 29 H 1.09004 * 109.47434 * 60.00005 * 3 2 1 30 30 H 1.08999 * 109.47262 * 299.99962 * 3 2 1 31 31 H 1.09001 * 109.46768 * 180.02562 * 9 7 5 32 32 H 1.09001 * 109.46845 * 299.99462 * 9 7 5 33 33 H 1.08996 * 109.47285 * 59.99706 * 9 7 5 34 34 H 1.09006 * 109.47707 * 48.68650 * 11 10 7 35 35 H 1.09004 * 109.47397 * 168.68739 * 11 10 7 36 36 H 0.96996 * 119.99847 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.46741 * 44.12013 * 20 10 7 38 38 H 1.08999 * 109.47178 * 284.12143 * 20 10 7 39 39 H 1.08994 * 115.55253 * 330.71670 * 21 20 10 40 40 H 1.09007 * 117.49893 * 214.97281 * 22 21 20 41 41 H 1.09004 * 117.50298 * 359.97438 * 22 21 20 42 42 H 1.08995 * 117.50009 * 252.50478 * 23 22 21 43 43 H 1.09000 * 117.49580 * 107.49007 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4920 1.4424 0.0006 5 6 4.1015 2.6384 0.0002 6 8 3.4435 3.6516 -0.0003 7 6 5.6064 2.7171 0.0013 8 1 5.9954 2.2237 0.8919 9 6 6.1544 2.0227 -1.2471 10 7 6.0230 4.1258 0.0012 11 6 7.4823 4.2433 0.1217 12 6 7.9032 3.8635 1.5181 13 1 7.1574 3.6085 2.2563 14 6 9.2405 3.8416 1.8531 15 7 10.1488 4.1517 0.9540 16 14 9.7622 3.3701 3.5837 17 1 9.9758 1.9022 3.6537 18 1 11.0252 4.0711 3.9282 19 1 8.7004 3.7623 4.5449 20 6 5.5365 4.8186 -1.1994 21 6 5.6341 6.3310 -0.9903 22 6 6.5780 7.1119 -1.9069 23 6 5.0634 7.2339 -2.0858 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 7.2429 2.0793 -1.2460 32 1 5.8453 0.9774 -1.2465 33 1 5.7653 2.5162 -2.1377 34 1 7.9611 3.5769 -0.5959 35 1 7.7821 5.2714 -0.0812 36 1 11.0895 4.1360 1.1895 37 1 4.4977 4.5433 -1.3819 38 1 6.1448 4.5303 -2.0568 39 1 5.5396 6.6700 0.0413 40 1 7.1045 7.9647 -1.4782 41 1 7.1301 6.5482 -2.6589 42 1 4.6188 6.7505 -2.9556 43 1 4.5935 8.1669 -1.7748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746462607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:44:06 Heat of formation + Delta-G solvation = -63.346423 kcal Electronic energy + Delta-G solvation = -21481.335278 eV Core-core repulsion = 18334.573213 eV Total energy + Delta-G solvation = -3146.762065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.32953 -37.97796 -36.42829 -35.53551 -33.90742 -32.62061 -30.19638 -27.64765 -26.85651 -25.19234 -23.90237 -22.02399 -21.76303 -21.42917 -20.18088 -19.05912 -17.21672 -16.56681 -16.35001 -16.08213 -15.18424 -14.87076 -14.62579 -14.40910 -13.86240 -13.64300 -13.17509 -12.90753 -12.76401 -12.64118 -12.38239 -12.13161 -11.66284 -11.49166 -11.34715 -11.25105 -11.18852 -11.08096 -10.95411 -10.77092 -10.70736 -10.53689 -10.33062 -9.99783 -9.82332 -9.73631 -9.26407 -9.01963 -8.42675 -7.28299 -6.02752 -4.04220 2.64968 2.89352 3.31849 3.38696 3.43402 4.29604 4.43248 4.70496 4.75455 4.78810 4.95098 5.20752 5.29395 5.32003 5.32828 5.44135 5.46079 5.50579 5.54641 5.60286 5.72568 5.74331 5.89646 5.98187 5.99233 6.04679 6.10620 6.20839 6.29090 6.33738 6.44346 6.52703 6.54378 6.74456 6.88160 7.26776 7.36982 7.80314 8.00616 8.13948 8.24877 8.52014 9.03390 9.60161 11.07411 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.005854 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.567465 B = 4782.004220 C = 6364.544830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.065 3.935 4 O -0.362 6.362 5 C 0.465 3.535 6 O -0.493 6.493 7 C 0.102 3.898 8 H 0.128 0.872 9 C -0.180 4.180 10 N -0.515 5.515 11 C 0.192 3.808 12 C -0.510 4.510 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.076 3.924 21 C -0.121 4.121 22 C -0.182 4.182 23 C -0.188 4.188 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.003 0.997 35 H 0.041 0.959 36 H 0.261 0.739 37 H 0.080 0.920 38 H 0.023 0.977 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.736 -5.055 -5.346 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.009 4.009 4 O -0.279 6.279 5 C 0.307 3.693 6 O -0.379 6.379 7 C -0.008 4.008 8 H 0.145 0.855 9 C -0.238 4.238 10 N -0.240 5.240 11 C 0.067 3.933 12 C -0.549 4.549 13 H 0.080 0.920 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.051 4.051 21 C -0.139 4.139 22 C -0.219 4.219 23 C -0.226 4.226 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.021 0.979 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.041 0.959 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.983 -4.500 -4.951 15.501 hybrid contribution 0.683 -0.441 0.252 0.851 sum -13.300 -4.942 -4.699 14.946 Atomic orbital electron populations 1.21689 0.94469 1.02275 1.02249 1.21502 0.95853 0.95104 1.03680 1.23013 0.77528 0.98077 1.02309 1.86516 1.22466 1.34426 1.84506 1.24207 0.92391 0.80806 0.71899 1.90583 1.66954 1.36028 1.44381 1.21221 0.85175 0.93055 1.01379 0.85494 1.22370 1.03784 1.00625 0.97063 1.62052 1.17273 1.07808 1.36879 1.19885 0.78637 0.97754 0.96978 1.21179 0.91593 1.45641 0.96463 0.91967 1.24951 0.96579 0.95517 0.97285 1.69952 1.00926 1.48981 1.33762 0.86550 0.78040 0.78409 0.84760 1.20722 1.21302 1.19796 1.21812 1.00093 0.91943 0.91300 1.22151 1.02442 0.93048 0.96308 1.22985 0.92052 1.03312 1.03512 1.22901 0.96543 1.01702 1.01436 0.92357 0.92435 0.91856 0.90899 0.90763 0.91460 0.91669 0.89739 0.91719 0.92996 0.97933 0.94130 0.92940 0.90199 0.95894 0.87155 0.89237 0.89312 0.89638 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.17 6.31 -26.73 -0.17 -1.34 16 3 C 0.06 0.81 5.47 37.16 0.20 1.01 16 4 O -0.36 -5.64 10.12 -39.27 -0.40 -6.04 16 5 C 0.46 8.43 6.83 36.00 0.25 8.68 16 6 O -0.49 -9.89 13.80 -18.74 -0.26 -10.14 16 7 C 0.10 1.96 2.76 -68.86 -0.19 1.77 16 8 H 0.13 2.57 7.19 -51.93 -0.37 2.20 16 9 C -0.18 -3.04 8.49 37.16 0.32 -2.73 16 10 N -0.52 -11.18 4.19 -229.47 -0.96 -12.14 16 11 C 0.19 4.80 4.45 -4.97 -0.02 4.78 16 12 C -0.51 -13.92 8.47 -34.44 -0.29 -14.21 16 13 H 0.06 1.70 7.58 -52.49 -0.40 1.30 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -25.93 13.29 55.43 0.74 -25.20 16 16 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.08 1.49 3.85 -3.83 -0.01 1.47 16 21 C -0.12 -2.24 4.96 -90.62 -0.45 -2.69 16 22 C -0.18 -3.03 10.09 -26.73 -0.27 -3.30 16 23 C -0.19 -2.87 10.25 -26.73 -0.27 -3.14 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 31 H 0.08 1.58 6.31 -51.93 -0.33 1.25 16 32 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 33 H 0.05 0.83 6.76 -51.93 -0.35 0.48 16 34 H 0.00 0.08 6.00 -51.93 -0.31 -0.23 16 35 H 0.04 1.10 7.10 -51.93 -0.37 0.73 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.08 1.55 5.32 -51.93 -0.28 1.28 16 38 H 0.02 0.44 6.88 -51.93 -0.36 0.08 16 39 H 0.11 2.23 8.14 -51.93 -0.42 1.81 16 40 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -29.69 346.68 -8.71 -38.40 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.39 Total: 2.52 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.65 Total: -8.92 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.22 Total: -37.34 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.66 Total: -16.18 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.69 -8.71 -38.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746462607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.944 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds