Wall clock time and date at job start Mon Mar 30 2020 19:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48507 * 109.46917 * 275.29147 * 3 2 1 5 5 H 1.48496 * 109.46914 * 35.29029 * 3 2 1 6 6 H 1.48502 * 109.47090 * 155.29593 * 3 2 1 7 7 C 1.38820 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99634 * 336.08567 * 7 2 1 9 9 N 1.36933 * 119.99728 * 156.08926 * 7 2 1 10 10 C 1.46498 * 120.00240 * 322.00793 * 9 7 2 11 11 C 1.52991 * 109.47373 * 270.00099 * 10 9 7 12 12 C 1.52994 * 109.47671 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47680 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47222 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47222 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47222 * 180.02562 * 15 14 13 17 17 O 1.42896 * 109.46685 * 180.02562 * 16 15 14 18 18 C 1.46507 * 119.99673 * 142.01186 * 9 7 2 19 19 C 1.54266 * 110.03254 * 62.57594 * 18 9 7 20 20 C 1.54962 * 104.16081 * 217.13647 * 19 18 9 21 21 C 1.54889 * 102.77997 * 37.88795 * 20 19 18 22 22 C 1.53870 * 110.03320 * 305.35889 * 18 9 7 23 23 H 0.96997 * 119.99896 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47018 * 30.00746 * 10 9 7 25 25 H 1.09005 * 109.47164 * 150.00371 * 10 9 7 26 26 H 1.09005 * 109.47471 * 300.00626 * 11 10 9 27 27 H 1.08999 * 109.47009 * 59.99684 * 11 10 9 28 28 H 1.09005 * 109.47220 * 300.00823 * 12 11 10 29 29 H 1.09005 * 109.46979 * 60.00202 * 12 11 10 30 30 H 1.09001 * 109.46937 * 300.00049 * 13 12 11 31 31 H 1.08999 * 109.46944 * 60.00450 * 13 12 11 32 32 H 1.09002 * 109.46863 * 300.00312 * 14 13 12 33 33 H 1.09005 * 109.47335 * 60.00167 * 14 13 12 34 34 H 1.09004 * 109.46867 * 300.00411 * 15 14 13 35 35 H 1.09005 * 109.46829 * 59.99857 * 15 14 13 36 36 H 1.09001 * 109.47077 * 299.99807 * 16 15 14 37 37 H 1.08993 * 109.47069 * 59.99877 * 16 15 14 38 38 H 0.96709 * 113.99532 * 179.97438 * 17 16 15 39 39 H 1.08997 * 110.01725 * 183.96742 * 18 9 7 40 40 H 1.08997 * 110.48506 * 335.78556 * 19 18 9 41 41 H 1.09006 * 110.48623 * 98.42714 * 19 18 9 42 42 H 1.09001 * 110.72050 * 279.57458 * 20 19 18 43 43 H 1.09003 * 110.92406 * 156.29988 * 20 19 18 44 44 H 1.08997 * 110.48998 * 203.40959 * 21 20 19 45 45 H 1.09000 * 110.59508 * 80.81413 * 21 20 19 46 46 H 1.09002 * 110.03461 * 238.57223 * 22 18 9 47 47 H 1.09004 * 110.03262 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3858 2.1110 -1.3942 5 1 1.5080 2.6178 0.8088 6 1 3.5992 1.4105 0.5851 7 6 2.0103 -1.2022 -0.0005 8 1 1.5398 -2.0975 0.3782 9 7 3.2915 -1.2528 -0.4812 10 6 3.6655 -0.4594 -1.6545 11 6 3.4298 -1.2819 -2.9228 12 6 3.8198 -0.4531 -4.1482 13 6 3.5834 -1.2755 -5.4166 14 6 3.9741 -0.4467 -6.6419 15 6 3.7371 -1.2689 -7.9103 16 6 4.1284 -0.4404 -9.1357 17 8 3.9065 -1.2081 -10.3202 18 6 4.2881 -2.1006 0.1779 19 6 3.8622 -3.5808 0.0926 20 6 4.2977 -4.1796 1.4539 21 6 3.9912 -3.0313 2.4471 22 6 4.3706 -1.7513 1.6741 23 1 -0.4850 0.8400 0.0004 24 1 3.0585 0.4452 -1.6900 25 1 4.7191 -0.1875 -1.5885 26 1 4.0368 -2.1866 -2.8873 27 1 2.3763 -1.5538 -2.9888 28 1 3.2124 0.4513 -4.1835 29 1 4.8732 -0.1808 -4.0824 30 1 4.1906 -2.1800 -5.3815 31 1 2.5299 -1.5473 -5.4822 32 1 3.3673 0.4580 -6.6771 33 1 5.0277 -0.1752 -6.5761 34 1 4.3436 -2.1739 -7.8753 35 1 2.6834 -1.5400 -7.9759 36 1 3.5222 0.4648 -9.1709 37 1 5.1821 -0.1697 -9.0697 38 1 4.1332 -0.7441 -11.1379 39 1 5.2624 -1.9648 -0.2915 40 1 2.7821 -3.6605 -0.0309 41 1 4.3787 -4.0799 -0.7273 42 1 5.3625 -4.4128 1.4497 43 1 3.7108 -5.0659 1.6950 44 1 4.6018 -3.1300 3.3446 45 1 2.9325 -3.0209 2.7062 46 1 5.3852 -1.4468 1.9311 47 1 3.6694 -0.9507 1.9099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173780708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:47:07 Heat of formation + Delta-G solvation = -70.838378 kcal Electronic energy + Delta-G solvation = -21144.081042 eV Core-core repulsion = 18132.827196 eV Total energy + Delta-G solvation = -3011.253846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 269.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -37.97149 -37.52276 -36.03578 -34.54202 -32.49313 -31.22608 -28.82191 -27.88607 -26.80627 -25.25783 -23.05364 -21.68503 -20.93119 -20.53017 -19.90162 -18.87855 -17.50396 -16.33566 -16.18252 -15.45799 -15.29311 -14.78982 -14.37665 -14.27907 -13.58739 -13.44931 -13.08815 -12.81365 -12.61107 -12.46808 -12.26102 -11.83634 -11.61761 -11.34367 -11.14117 -11.00629 -10.79596 -10.73457 -10.57323 -10.43114 -10.38979 -10.33468 -10.21498 -10.19143 -10.08268 -9.90503 -9.71944 -9.53515 -9.33740 -8.41114 -6.69209 -5.95085 -3.33353 3.33955 3.49611 3.55553 3.95953 4.57486 4.77686 4.86568 4.98006 5.10841 5.17386 5.24500 5.29849 5.39348 5.46093 5.48583 5.55468 5.66440 5.77322 5.78448 5.89450 6.01045 6.07746 6.12808 6.14302 6.22603 6.26234 6.32635 6.37261 6.39466 6.43443 6.48565 6.55192 6.57569 6.59463 6.66857 6.78098 6.98833 6.99903 7.11959 7.20359 7.24095 7.35593 8.13858 8.47880 9.09685 9.79784 10.22493 11.20915 Molecular weight = 269.21amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.004001 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.943684 B = 6997.105041 C = 8004.072112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.037 3.963 3 Si 0.870 3.130 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.255 4.255 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.138 3.862 11 C -0.132 4.132 12 C -0.119 4.119 13 C -0.116 4.116 14 C -0.117 4.117 15 C -0.121 4.121 16 C 0.074 3.926 17 O -0.577 6.577 18 C 0.173 3.827 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.134 4.134 23 H 0.261 0.739 24 H 0.052 0.948 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.377 0.623 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.515 -1.864 -10.669 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.163 4.163 3 Si 0.700 3.300 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.383 4.383 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.013 3.987 11 C -0.172 4.172 12 C -0.157 4.157 13 C -0.154 4.154 14 C -0.155 4.155 15 C -0.159 4.159 16 C -0.004 4.004 17 O -0.382 6.382 18 C 0.066 3.934 19 C -0.173 4.173 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.173 4.173 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.224 0.776 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.159 -2.196 -10.197 14.561 hybrid contribution 0.580 1.517 -0.402 1.673 sum 10.739 -0.679 -10.599 15.104 Atomic orbital electron populations 1.69892 1.06005 1.26526 1.51709 1.25462 0.94954 0.97486 0.98388 0.87036 0.80851 0.85223 0.76881 1.21536 1.23197 1.19403 1.18612 0.87111 0.94200 1.38416 0.90406 1.44312 1.08234 1.51773 1.27927 1.21181 0.96861 0.94210 0.86476 1.22109 1.02149 0.98606 0.94305 1.21590 1.00658 0.99021 0.94481 1.21570 1.01721 0.98481 0.93584 1.21541 1.01490 0.98816 0.93634 1.21562 1.02660 0.99166 0.92488 1.22262 0.98991 0.93861 0.85251 1.86493 1.89996 1.45329 1.16427 1.21031 0.90981 0.90030 0.91372 1.22836 1.02361 0.97035 0.95079 1.22435 0.99591 0.97471 0.96568 1.22239 1.01056 0.95275 0.96883 1.22546 0.99757 0.98321 0.96663 0.92889 0.93030 0.94867 0.93116 0.91399 0.92414 0.92822 0.92197 0.91841 0.91905 0.92064 0.91353 0.91208 0.93706 0.93787 0.77649 0.93263 0.90388 0.93470 0.92753 0.92747 0.93350 0.91636 0.93917 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.97 55.49 0.78 -26.39 16 2 C 0.04 1.05 5.27 -17.43 -0.09 0.96 16 3 Si 0.87 22.08 25.19 -169.99 -4.28 17.80 16 4 H -0.29 -7.12 6.65 56.52 0.38 -6.75 16 5 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.86 8.19 -15.06 -0.12 -6.99 16 8 H 0.08 2.29 7.09 -52.49 -0.37 1.91 16 9 N -0.60 -13.87 2.02 -164.40 -0.33 -14.20 16 10 C 0.14 2.95 4.51 -4.05 -0.02 2.93 16 11 C -0.13 -2.46 5.54 -26.74 -0.15 -2.60 16 12 C -0.12 -1.83 5.21 -26.73 -0.14 -1.97 16 13 C -0.12 -1.52 5.21 -26.73 -0.14 -1.66 16 14 C -0.12 -1.29 5.21 -26.73 -0.14 -1.43 16 15 C -0.12 -1.29 5.58 -26.73 -0.15 -1.44 16 16 C 0.07 0.68 7.05 37.16 0.26 0.95 16 17 O -0.58 -5.70 13.66 -35.23 -0.48 -6.18 16 18 C 0.17 3.43 3.42 -66.81 -0.23 3.20 16 19 C -0.13 -2.44 6.43 -25.03 -0.16 -2.60 16 20 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 21 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 22 C -0.13 -2.57 6.24 -25.61 -0.16 -2.73 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.05 1.22 3.44 -51.93 -0.18 1.04 16 25 H 0.03 0.65 7.90 -51.93 -0.41 0.24 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.38 1.87 9.12 45.56 0.42 2.29 16 39 H 0.05 0.91 7.81 -51.93 -0.41 0.51 16 40 H 0.08 1.64 6.65 -51.93 -0.35 1.29 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.08 1.80 7.17 -51.93 -0.37 1.42 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -30.28 361.37 -8.89 -39.17 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.44 Total: 2.00 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -1.58 Total: -17.64 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.44 Total: -40.59 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.48 Total: -6.18 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.28 Total: 17.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.28 -8.89 -39.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173780708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.664 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds