Wall clock time and date at job start Mon Mar 30 2020 19:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99988 * 2 1 4 4 H 1.48507 * 109.46917 * 275.29147 * 3 2 1 5 5 H 1.48496 * 109.46914 * 35.29029 * 3 2 1 6 6 H 1.48502 * 109.47090 * 155.29593 * 3 2 1 7 7 C 1.38820 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99634 * 336.08567 * 7 2 1 9 9 N 1.36933 * 119.99728 * 156.08926 * 7 2 1 10 10 C 1.46498 * 120.00240 * 322.00793 * 9 7 2 11 11 C 1.52991 * 109.47373 * 270.00099 * 10 9 7 12 12 C 1.52994 * 109.47671 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47680 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47222 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47222 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47222 * 180.02562 * 15 14 13 17 17 O 1.42896 * 109.46685 * 180.02562 * 16 15 14 18 18 C 1.46507 * 119.99673 * 142.01186 * 9 7 2 19 19 C 1.54266 * 110.03254 * 62.57594 * 18 9 7 20 20 C 1.54962 * 104.16081 * 217.13647 * 19 18 9 21 21 C 1.54889 * 102.77997 * 37.88795 * 20 19 18 22 22 C 1.53870 * 110.03320 * 305.35889 * 18 9 7 23 23 H 0.96997 * 119.99896 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.47018 * 30.00746 * 10 9 7 25 25 H 1.09005 * 109.47164 * 150.00371 * 10 9 7 26 26 H 1.09005 * 109.47471 * 300.00626 * 11 10 9 27 27 H 1.08999 * 109.47009 * 59.99684 * 11 10 9 28 28 H 1.09005 * 109.47220 * 300.00823 * 12 11 10 29 29 H 1.09005 * 109.46979 * 60.00202 * 12 11 10 30 30 H 1.09001 * 109.46937 * 300.00049 * 13 12 11 31 31 H 1.08999 * 109.46944 * 60.00450 * 13 12 11 32 32 H 1.09002 * 109.46863 * 300.00312 * 14 13 12 33 33 H 1.09005 * 109.47335 * 60.00167 * 14 13 12 34 34 H 1.09004 * 109.46867 * 300.00411 * 15 14 13 35 35 H 1.09005 * 109.46829 * 59.99857 * 15 14 13 36 36 H 1.09001 * 109.47077 * 299.99807 * 16 15 14 37 37 H 1.08993 * 109.47069 * 59.99877 * 16 15 14 38 38 H 0.96709 * 113.99532 * 179.97438 * 17 16 15 39 39 H 1.08997 * 110.01725 * 183.96742 * 18 9 7 40 40 H 1.08997 * 110.48506 * 335.78556 * 19 18 9 41 41 H 1.09006 * 110.48623 * 98.42714 * 19 18 9 42 42 H 1.09001 * 110.72050 * 279.57458 * 20 19 18 43 43 H 1.09003 * 110.92406 * 156.29988 * 20 19 18 44 44 H 1.08997 * 110.48998 * 203.40959 * 21 20 19 45 45 H 1.09000 * 110.59508 * 80.81413 * 21 20 19 46 46 H 1.09002 * 110.03461 * 238.57223 * 22 18 9 47 47 H 1.09004 * 110.03262 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3858 2.1110 -1.3942 5 1 1.5080 2.6178 0.8088 6 1 3.5992 1.4105 0.5851 7 6 2.0103 -1.2022 -0.0005 8 1 1.5398 -2.0975 0.3782 9 7 3.2915 -1.2528 -0.4812 10 6 3.6655 -0.4594 -1.6545 11 6 3.4298 -1.2819 -2.9228 12 6 3.8198 -0.4531 -4.1482 13 6 3.5834 -1.2755 -5.4166 14 6 3.9741 -0.4467 -6.6419 15 6 3.7371 -1.2689 -7.9103 16 6 4.1284 -0.4404 -9.1357 17 8 3.9065 -1.2081 -10.3202 18 6 4.2881 -2.1006 0.1779 19 6 3.8622 -3.5808 0.0926 20 6 4.2977 -4.1796 1.4539 21 6 3.9912 -3.0313 2.4471 22 6 4.3706 -1.7513 1.6741 23 1 -0.4850 0.8400 0.0004 24 1 3.0585 0.4452 -1.6900 25 1 4.7191 -0.1875 -1.5885 26 1 4.0368 -2.1866 -2.8873 27 1 2.3763 -1.5538 -2.9888 28 1 3.2124 0.4513 -4.1835 29 1 4.8732 -0.1808 -4.0824 30 1 4.1906 -2.1800 -5.3815 31 1 2.5299 -1.5473 -5.4822 32 1 3.3673 0.4580 -6.6771 33 1 5.0277 -0.1752 -6.5761 34 1 4.3436 -2.1739 -7.8753 35 1 2.6834 -1.5400 -7.9759 36 1 3.5222 0.4648 -9.1709 37 1 5.1821 -0.1697 -9.0697 38 1 4.1332 -0.7441 -11.1379 39 1 5.2624 -1.9648 -0.2915 40 1 2.7821 -3.6605 -0.0309 41 1 4.3787 -4.0799 -0.7273 42 1 5.3625 -4.4128 1.4497 43 1 3.7108 -5.0659 1.6950 44 1 4.6018 -3.1300 3.3446 45 1 2.9325 -3.0209 2.7062 46 1 5.3852 -1.4468 1.9311 47 1 3.6694 -0.9507 1.9099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173780708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:47:06 Heat of formation + Delta-G solvation = -89.203797 kcal Electronic energy + Delta-G solvation = -21144.877427 eV Core-core repulsion = 18132.827196 eV Total energy + Delta-G solvation = -3012.050231 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 269.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.56675 -38.32050 -37.22137 -35.97478 -34.06027 -32.96087 -30.06394 -29.35195 -28.42057 -26.69431 -24.56321 -23.04639 -21.91843 -21.85392 -21.28807 -20.59432 -18.31054 -18.18746 -17.33029 -16.95294 -16.91997 -16.04027 -15.83109 -15.29506 -15.03056 -14.80459 -14.73757 -14.14772 -14.03926 -13.86438 -13.81119 -13.19532 -13.02093 -12.83291 -12.57861 -12.36149 -12.19330 -12.05190 -11.96387 -11.82240 -11.77679 -11.73125 -11.62688 -11.43883 -11.42215 -11.27171 -11.22084 -11.08265 -10.87978 -10.52246 -8.61618 -8.14899 -5.48470 1.29487 1.40205 1.51196 2.45615 3.07111 3.28018 3.40849 3.95244 3.95561 4.00236 4.07941 4.13275 4.16370 4.27163 4.38519 4.40887 4.50666 4.64648 4.67901 4.69768 4.76090 4.78323 4.84007 4.90470 4.93558 4.94156 4.97278 5.01195 5.10065 5.12296 5.19224 5.21813 5.25715 5.31251 5.32265 5.43360 5.53360 5.55037 5.59956 5.65693 5.66703 6.03941 6.28381 6.89602 7.10471 7.75430 8.16613 9.05797 Molecular weight = 269.21amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.004001 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.943684 B = 6997.105041 C = 8004.072112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.020 4.020 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.314 1.314 6 H -0.259 1.259 7 C -0.228 4.228 8 H 0.039 0.961 9 N -0.612 5.612 10 C 0.131 3.869 11 C -0.120 4.120 12 C -0.113 4.113 13 C -0.113 4.113 14 C -0.109 4.109 15 C -0.121 4.121 16 C 0.074 3.926 17 O -0.599 6.599 18 C 0.163 3.837 19 C -0.131 4.131 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.135 4.135 23 H 0.259 0.741 24 H 0.028 0.972 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.397 0.603 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.069 0.931 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.135 -1.935 -11.569 18.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.216 4.216 3 Si 0.761 3.239 4 H -0.205 1.205 5 H -0.244 1.244 6 H -0.183 1.183 7 C -0.358 4.358 8 H 0.057 0.943 9 N -0.334 5.334 10 C 0.006 3.994 11 C -0.160 4.160 12 C -0.151 4.151 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.159 4.159 16 C -0.003 4.003 17 O -0.408 6.408 18 C 0.057 3.943 19 C -0.170 4.170 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.174 4.174 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.247 0.753 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.056 0.944 46 H 0.088 0.912 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.830 -2.273 -11.121 17.892 hybrid contribution -0.523 1.418 -0.131 1.517 sum 13.308 -0.855 -11.253 17.448 Atomic orbital electron populations 1.70018 1.07648 1.26961 1.55038 1.25990 0.95434 1.00604 0.99539 0.86026 0.79641 0.81164 0.77071 1.20476 1.24355 1.18304 1.18397 0.88610 0.92581 1.36201 0.94292 1.44449 1.07517 1.52391 1.29018 1.21311 0.97837 0.93445 0.86788 1.21937 1.00046 0.99224 0.94821 1.21531 1.01666 0.98154 0.93733 1.21516 1.01000 0.98855 0.93671 1.21449 1.02380 0.98296 0.92553 1.21526 1.01732 0.99331 0.93314 1.22250 1.00072 0.93534 0.84482 1.86435 1.90293 1.46447 1.17634 1.21333 0.91137 0.90043 0.91783 1.22741 1.00022 0.96635 0.97622 1.22406 1.01558 0.96969 0.93987 1.22220 0.99931 0.94887 0.98281 1.22526 1.00211 0.98048 0.96576 0.93236 0.95411 0.92043 0.91945 0.95126 0.93525 0.90536 0.91462 0.93438 0.91885 0.90454 0.91710 0.92659 0.92916 0.92191 0.75315 0.90645 0.94384 0.91556 0.89633 0.91810 0.90414 0.94419 0.91213 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.97 21.65 0.30 -60.00 16 2 C -0.02 -1.18 5.27 84.86 0.45 -0.73 16 3 Si 0.93 46.78 25.19 68.60 1.73 48.51 16 4 H -0.28 -13.33 6.65 99.48 0.66 -12.67 16 5 H -0.31 -16.19 7.11 99.48 0.71 -15.49 16 6 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.23 -12.75 8.19 84.04 0.69 -12.06 16 8 H 0.04 2.46 7.09 -2.91 -0.02 2.44 16 9 N -0.61 -28.11 2.02 -674.03 -1.36 -29.47 16 10 C 0.13 5.42 4.51 86.38 0.39 5.81 16 11 C -0.12 -4.39 5.54 30.59 0.17 -4.22 16 12 C -0.11 -3.25 5.21 30.59 0.16 -3.09 16 13 C -0.11 -2.80 5.21 30.59 0.16 -2.64 16 14 C -0.11 -2.17 5.21 30.59 0.16 -2.01 16 15 C -0.12 -2.40 5.58 30.59 0.17 -2.23 16 16 C 0.07 1.21 7.05 71.98 0.51 1.72 16 17 O -0.60 -10.76 13.66 -148.98 -2.03 -12.80 16 18 C 0.16 6.16 3.42 45.71 0.16 6.32 16 19 C -0.13 -4.60 6.43 31.69 0.20 -4.39 16 20 C -0.11 -3.20 6.91 31.91 0.22 -2.98 16 21 C -0.12 -3.73 6.83 31.67 0.22 -3.52 16 22 C -0.13 -4.95 6.24 31.32 0.20 -4.75 16 23 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.03 1.29 3.44 -2.39 -0.01 1.28 16 25 H 0.06 2.20 7.90 -2.38 -0.02 2.18 16 26 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.40 3.15 9.12 -74.05 -0.68 2.48 16 39 H 0.08 2.48 7.81 -2.39 -0.02 2.47 16 40 H 0.04 1.63 6.65 -2.39 -0.02 1.61 16 41 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.04 1.79 7.17 -2.39 -0.02 1.78 16 Total: -1.00 -68.54 361.37 2.66 -65.88 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.18 Total: 16.66 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 3.84 Total: -28.78 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -1.06 Total: -89.47 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -2.03 Total: -12.80 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.73 Total: 48.51 kcal Total: -68.54 2.66 -65.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173780708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.325 kcal (2) G-P(sol) polarization free energy of solvation -68.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds