Wall clock time and date at job start Mon Mar 30 2020 19:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46992 * 2 1 4 4 C 1.52996 * 109.46644 * 119.99756 * 2 1 3 5 5 N 1.46504 * 109.46681 * 174.99857 * 4 2 1 6 6 C 1.36943 * 119.99781 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99788 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99622 * 180.27904 * 6 5 4 9 9 N 1.31614 * 120.00467 * 359.72375 * 8 6 5 10 10 Si 1.86801 * 119.99700 * 179.72266 * 8 6 5 11 11 H 1.48496 * 109.47031 * 59.99836 * 10 8 6 12 12 H 1.48497 * 109.47267 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47169 * 300.00118 * 10 8 6 14 14 N 1.46497 * 109.46846 * 239.99871 * 2 1 3 15 15 C 1.34780 * 120.00158 * 85.00776 * 14 2 1 16 16 O 1.21287 * 119.99777 * 359.97438 * 15 14 2 17 17 C 1.50693 * 120.00503 * 179.97438 * 15 14 2 18 18 C 1.52995 * 109.47391 * 179.97438 * 17 15 14 19 19 H 1.09001 * 110.64805 * 308.15083 * 18 17 15 20 20 C 1.54604 * 110.72324 * 184.99778 * 18 17 15 21 21 C 1.53990 * 105.13844 * 219.68281 * 20 18 17 22 22 N 1.47901 * 107.06174 * 358.77763 * 21 20 18 23 23 C 1.46898 * 110.99873 * 145.83869 * 22 21 20 24 24 C 1.48539 * 105.81784 * 25.32886 * 22 21 20 25 25 H 1.09000 * 109.47300 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47210 * 300.00268 * 1 2 3 27 27 H 1.09008 * 109.46692 * 59.99785 * 1 2 3 28 28 H 1.09006 * 109.47179 * 55.00474 * 4 2 1 29 29 H 1.08997 * 109.47540 * 294.99936 * 4 2 1 30 30 H 0.97000 * 120.00410 * 0.02562 * 5 4 2 31 31 H 0.96995 * 120.00147 * 180.02562 * 9 8 6 32 32 H 0.96995 * 119.99991 * 264.99586 * 14 2 1 33 33 H 1.09003 * 109.47008 * 299.99720 * 17 15 14 34 34 H 1.09009 * 109.47059 * 59.99354 * 17 15 14 35 35 H 1.08995 * 110.30879 * 338.60204 * 20 18 17 36 36 H 1.09005 * 110.30508 * 100.77219 * 20 18 17 37 37 H 1.09008 * 109.91125 * 118.13141 * 21 20 18 38 38 H 1.08996 * 109.92140 * 239.22203 * 21 20 18 39 39 H 1.08997 * 109.46950 * 60.12952 * 23 22 21 40 40 H 1.09001 * 109.46978 * 180.12573 * 23 22 21 41 41 H 1.09000 * 109.47413 * 300.12771 * 23 22 21 42 42 H 1.08999 * 110.66427 * 202.35478 * 24 22 21 43 43 H 1.09003 * 110.66634 * 79.22649 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1837 -1.4388 2.2068 7 1 3.6466 -1.8439 3.0517 8 6 5.5676 -1.5333 2.1540 9 7 6.2222 -1.0392 1.1247 10 14 6.5009 -2.3619 3.5439 11 1 6.0496 -3.7708 3.6722 12 1 7.9560 -2.3336 3.2490 13 1 6.2388 -1.6405 4.8152 14 7 2.0183 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3571 16 8 1.8584 1.1585 -2.4117 17 6 2.6499 -0.7285 -3.5875 18 6 2.7008 0.2545 -4.7588 19 1 1.7448 0.7653 -4.8737 20 6 3.0936 -0.4719 -6.0658 21 6 4.0427 0.4971 -6.7948 22 7 4.1503 1.7114 -5.9573 23 6 5.4950 2.2957 -6.0477 24 6 3.8522 1.2737 -4.5695 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.6053 -1.7198 1.2952 29 1 1.7516 -0.1583 2.1370 30 1 3.9824 -0.4622 0.4320 31 1 7.1892 -1.1056 1.0876 32 1 2.2490 -1.6317 -1.1526 33 1 3.6493 -1.1204 -3.3979 34 1 1.9776 -1.5508 -3.8325 35 1 3.6073 -1.4062 -5.8397 36 1 2.2086 -0.6631 -6.6729 37 1 5.0245 0.0379 -6.9111 38 1 3.6341 0.7519 -7.7727 39 1 5.7043 2.5673 -7.0823 40 1 5.5473 3.1858 -5.4207 41 1 6.2312 1.5676 -5.7071 42 1 3.5235 2.1172 -3.9624 43 1 4.7223 0.7927 -4.1226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569090607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:55:17 Heat of formation + Delta-G solvation = -32.591865 kcal Electronic energy + Delta-G solvation = -21122.734500 eV Core-core repulsion = 18009.598803 eV Total energy + Delta-G solvation = -3113.135696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.184 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -39.84768 -38.56823 -36.13447 -33.62411 -33.33643 -31.38446 -30.18788 -29.53790 -27.20385 -25.69136 -24.91807 -22.69306 -21.34422 -20.95027 -20.15198 -19.75871 -17.31166 -16.82922 -16.02829 -15.73648 -15.27665 -15.05639 -14.70045 -14.10796 -13.73533 -13.65129 -13.58105 -13.31382 -12.98043 -12.41702 -12.31232 -12.20082 -12.16826 -11.94186 -11.60252 -11.44535 -11.36081 -11.21293 -10.92006 -10.84328 -10.73968 -10.51572 -10.46279 -10.09380 -9.76296 -9.42383 -8.93578 -8.63157 -8.45426 -6.98715 -5.81051 -3.10681 3.01551 3.40650 3.45424 3.46314 3.54861 4.03474 4.54597 4.60015 4.62267 4.86831 5.08824 5.15559 5.29283 5.30933 5.41080 5.45414 5.50644 5.52330 5.56909 5.66544 5.68014 5.69989 5.75091 5.82382 5.86913 5.95172 6.03607 6.10926 6.19220 6.25897 6.35505 6.40862 6.49757 6.71572 6.85800 6.99347 7.00824 7.64810 7.93782 8.37128 8.62607 9.48884 10.05181 10.40753 11.41334 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.004558 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.203101 B = 6141.038615 C = 7323.222818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.133 3.867 3 H 0.086 0.914 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.244 4.244 7 H 0.070 0.930 8 C -0.011 4.011 9 N -0.932 5.932 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.713 5.713 15 C 0.514 3.486 16 O -0.547 6.547 17 C -0.135 4.135 18 C -0.071 4.071 19 H 0.091 0.909 20 C -0.129 4.129 21 C 0.035 3.965 22 N -0.525 5.525 23 C 0.016 3.984 24 C 0.041 3.959 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.024 0.976 29 H 0.032 0.968 30 H 0.386 0.614 31 H 0.256 0.744 32 H 0.403 0.597 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.093 0.907 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 0.208 -13.867 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 H 0.104 0.896 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.375 4.375 7 H 0.088 0.912 8 C -0.208 4.208 9 N -0.580 5.580 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.212 1.212 14 N -0.364 5.364 15 C 0.300 3.700 16 O -0.425 6.425 17 C -0.176 4.176 18 C -0.091 4.091 19 H 0.109 0.891 20 C -0.167 4.167 21 C -0.093 4.093 22 N -0.249 5.249 23 C -0.133 4.133 24 C -0.086 4.086 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.220 0.780 31 H 0.066 0.934 32 H 0.237 0.763 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.112 0.888 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.047 1.387 -13.921 16.139 hybrid contribution 1.591 -1.466 0.898 2.342 sum -6.456 -0.079 -13.023 14.536 Atomic orbital electron populations 1.22093 0.95633 1.01732 1.02071 1.21210 0.93250 0.97989 0.84744 0.89637 1.20983 0.86813 0.96921 0.93684 1.42352 0.99769 1.70246 1.25283 1.19190 0.89425 1.29583 0.99279 0.91191 1.24740 0.96404 1.01527 0.98083 1.69652 1.07275 1.50804 1.30315 0.86263 0.78969 0.79213 0.81690 1.21255 1.21691 1.21230 1.46022 1.66603 1.14370 1.09374 1.20550 0.77383 0.87377 0.84688 1.90664 1.50614 1.15938 1.85255 1.21736 1.03511 0.99233 0.93099 1.21776 1.00201 0.94859 0.92246 0.89108 1.22503 0.99536 0.98262 0.96425 1.22854 0.98527 0.90216 0.97750 1.64744 1.26613 1.25944 1.07559 1.22504 0.88917 0.99856 1.02037 1.23361 0.96694 0.98965 0.89605 0.92685 0.91783 0.92460 0.95853 0.94983 0.78006 0.93449 0.76250 0.88620 0.88937 0.91206 0.90947 0.93915 0.90635 0.91634 0.91172 0.95329 0.88824 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.48 37.16 0.35 -1.80 16 2 C 0.13 2.24 2.73 -67.93 -0.19 2.05 16 3 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 4 C 0.14 2.80 5.82 -4.04 -0.02 2.77 16 5 N -0.73 -18.06 5.43 -59.91 -0.33 -18.39 16 6 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 9 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 10 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 N -0.71 -11.23 4.52 -53.81 -0.24 -11.47 16 15 C 0.51 8.11 7.63 -10.99 -0.08 8.03 16 16 O -0.55 -10.27 14.51 5.55 0.08 -10.19 16 17 C -0.14 -1.65 5.08 -27.89 -0.14 -1.80 16 18 C -0.07 -0.88 2.62 -88.76 -0.23 -1.12 16 19 H 0.09 1.24 7.88 -51.93 -0.41 0.83 16 20 C -0.13 -1.29 6.51 -25.37 -0.17 -1.46 16 21 C 0.03 0.37 6.70 -2.76 -0.02 0.35 16 22 N -0.52 -6.73 5.55 -238.71 -1.33 -8.05 16 23 C 0.02 0.18 9.40 60.06 0.56 0.74 16 24 C 0.04 0.58 5.46 -1.90 -0.01 0.57 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.39 10.15 7.33 -40.82 -0.30 9.85 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.40 5.99 8.60 -40.82 -0.35 5.64 16 33 H 0.10 1.18 7.99 -51.93 -0.42 0.76 16 34 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 35 H 0.07 0.64 7.85 -51.93 -0.41 0.23 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.43 7.73 -51.92 -0.40 0.03 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.32 8.00 -51.93 -0.42 -0.10 16 42 H 0.09 1.53 7.40 -51.93 -0.38 1.14 16 43 H 0.05 0.67 7.77 -51.93 -0.40 0.27 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -31.44 346.56 -8.73 -40.17 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -7.65 Total: 11.64 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -0.19 Total: 1.08 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -1.17 Total: -65.00 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.44 -8.73 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569090607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.581 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds