Wall clock time and date at job start Mon Mar 30 2020 19:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47286 * 2 1 4 4 C 1.53001 * 109.47206 * 120.00092 * 2 1 3 5 5 C 1.53006 * 109.46940 * 174.99790 * 4 2 1 6 6 N 1.46903 * 109.46678 * 184.16527 * 5 4 2 7 7 C 1.46906 * 110.99686 * 160.07817 * 6 5 4 8 8 C 1.50700 * 109.47036 * 288.08768 * 7 6 5 9 9 H 1.08001 * 120.00069 * 355.73016 * 8 7 6 10 10 C 1.37873 * 119.99671 * 175.73360 * 8 7 6 11 11 N 1.31518 * 120.00373 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99915 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46601 * 359.97438 * 12 10 8 14 14 H 1.48491 * 109.47418 * 119.99608 * 12 10 8 15 15 H 1.48501 * 109.46963 * 240.00136 * 12 10 8 16 16 C 1.46897 * 111.00110 * 284.02848 * 6 5 4 17 17 C 1.53001 * 109.47290 * 170.00370 * 16 6 5 18 18 H 1.08998 * 109.48056 * 59.99744 * 17 16 6 19 19 C 1.53094 * 109.49152 * 180.02562 * 17 16 6 20 20 C 1.53176 * 109.15973 * 177.59772 * 19 17 16 21 21 C 1.53175 * 109.03782 * 303.01418 * 20 19 17 22 22 C 1.53091 * 109.16246 * 56.98490 * 21 20 19 23 23 O 1.42905 * 109.47807 * 299.97896 * 17 16 6 24 24 H 1.08997 * 109.47017 * 299.99462 * 1 2 3 25 25 H 1.08999 * 109.47496 * 60.00148 * 1 2 3 26 26 H 1.09000 * 109.47213 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47159 * 239.99853 * 2 1 3 28 28 H 1.08999 * 109.46732 * 300.00319 * 3 2 1 29 29 H 1.09003 * 109.46620 * 59.99840 * 3 2 1 30 30 H 1.08997 * 109.47000 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47005 * 55.00200 * 4 2 1 32 32 H 1.09000 * 109.47067 * 294.99983 * 4 2 1 33 33 H 1.08999 * 109.46932 * 64.16964 * 5 4 2 34 34 H 1.08999 * 109.47020 * 304.16687 * 5 4 2 35 35 H 1.08998 * 109.46719 * 48.08596 * 7 6 5 36 36 H 1.08996 * 109.47151 * 168.08161 * 7 6 5 37 37 H 0.97001 * 119.99971 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.46901 * 50.00571 * 16 6 5 39 39 H 1.09002 * 109.47499 * 290.00363 * 16 6 5 40 40 H 1.09004 * 109.51417 * 297.49896 * 19 17 16 41 41 H 1.08993 * 109.52377 * 57.68739 * 19 17 16 42 42 H 1.09007 * 109.54131 * 183.15034 * 20 19 17 43 43 H 1.08999 * 109.61959 * 62.92602 * 20 19 17 44 44 H 1.09002 * 109.52599 * 297.08097 * 21 20 19 45 45 H 1.08998 * 109.57742 * 176.92187 * 21 20 19 46 46 H 1.09001 * 109.48094 * 182.40973 * 22 21 20 47 47 H 1.09000 * 109.49329 * 62.38119 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 7 4.0462 -1.6101 2.3365 7 6 5.3940 -2.1385 2.0866 8 6 5.3180 -3.2479 1.0695 9 1 4.3578 -3.5788 0.7020 10 6 6.4742 -3.8405 0.6082 11 7 7.6435 -3.4374 1.0553 12 14 6.3801 -5.2153 -0.6531 13 1 4.9586 -5.4798 -0.9916 14 1 7.1148 -4.8133 -1.8793 15 1 6.9918 -6.4459 -0.0905 16 6 4.0151 -0.8081 3.5668 17 6 4.2808 -1.7124 4.7721 18 1 5.2602 -2.1791 4.6674 19 6 4.2478 -0.8770 6.0546 20 6 4.4548 -1.7988 7.2604 21 6 3.3773 -2.8874 7.2479 22 6 3.4439 -3.6451 5.9193 23 8 3.2749 -2.7253 4.8387 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1370 33 1 4.0024 0.1668 1.2166 34 1 3.8563 -1.3291 0.2632 35 1 6.0323 -1.3407 1.7070 36 1 5.8106 -2.5258 3.0163 37 1 8.4569 -3.8546 0.7310 38 1 3.0355 -0.3415 3.6716 39 1 4.7821 -0.0353 3.5164 40 1 5.0431 -0.1322 6.0246 41 1 3.2827 -0.3776 6.1392 42 1 4.3767 -1.2190 8.1801 43 1 5.4404 -2.2606 7.2030 44 1 2.3946 -2.4286 7.3566 45 1 3.5489 -3.5805 8.0714 46 1 2.6516 -4.3930 5.8872 47 1 4.4123 -4.1374 5.8294 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173539607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:46:00 Heat of formation + Delta-G solvation = -75.293889 kcal Electronic energy + Delta-G solvation = -22028.369102 eV Core-core repulsion = 19016.922050 eV Total energy + Delta-G solvation = -3011.447052 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 269.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.10125 -37.25711 -35.28753 -33.25229 -32.56669 -31.33939 -28.74385 -27.32160 -26.94863 -25.27067 -23.72440 -22.64419 -21.89560 -19.99337 -19.73159 -19.37749 -16.45290 -15.75048 -15.71270 -14.93957 -14.70612 -14.66676 -14.31204 -14.10435 -13.92215 -13.40697 -13.13153 -12.83569 -12.58949 -12.32587 -12.14113 -11.97919 -11.86001 -11.64462 -11.47480 -11.23118 -11.00516 -10.88780 -10.77254 -10.64737 -10.54547 -10.40234 -10.30858 -10.13242 -9.94956 -9.83980 -9.47152 -9.09599 -8.88641 -8.35021 -7.06361 -5.96233 -3.95836 3.34478 3.41864 3.47953 4.27305 4.48193 4.76196 4.98319 5.05559 5.06430 5.17650 5.25296 5.27251 5.38348 5.49135 5.53396 5.67152 5.74243 5.77454 5.78621 5.92173 5.95271 5.99350 5.99993 6.02663 6.04939 6.09726 6.15354 6.16050 6.21646 6.27585 6.32386 6.35544 6.41060 6.53060 6.58919 6.65177 6.87322 6.95611 7.35395 7.42419 7.81139 7.93516 8.21792 8.32701 8.66563 9.13679 9.67901 11.14484 Molecular weight = 269.21amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.007734 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.587241 B = 3619.433232 C = 5867.621980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.105 4.105 5 C 0.064 3.936 6 N -0.526 5.526 7 C 0.191 3.809 8 C -0.496 4.496 9 H 0.064 0.936 10 C 0.052 3.948 11 N -0.902 5.902 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.065 3.935 17 C 0.096 3.904 18 H 0.064 0.936 19 C -0.150 4.150 20 C -0.120 4.120 21 C -0.155 4.155 22 C 0.059 3.941 23 O -0.353 6.353 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.017 0.983 34 H 0.081 0.919 35 H -0.009 1.009 36 H 0.028 0.972 37 H 0.259 0.741 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.699 6.592 7.432 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.064 4.064 6 N -0.250 5.250 7 C 0.066 3.934 8 C -0.535 4.535 9 H 0.082 0.918 10 C -0.148 4.148 11 N -0.543 5.543 12 Si 0.722 3.278 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.063 4.063 17 C 0.038 3.962 18 H 0.082 0.918 19 C -0.189 4.189 20 C -0.158 4.158 21 C -0.193 4.193 22 C -0.019 4.019 23 O -0.271 6.271 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.099 0.901 35 H 0.008 0.992 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.973 6.142 7.334 13.820 hybrid contribution 0.967 -0.062 -0.455 1.070 sum -9.006 6.080 6.880 12.861 Atomic orbital electron populations 1.21813 0.95846 1.01481 1.00932 1.21129 0.95078 0.96146 0.99425 1.21873 1.01464 0.96239 1.00786 1.21608 0.96439 1.00357 0.95880 1.22023 0.93651 0.94922 0.95819 1.62019 1.28693 1.33921 1.00371 1.19779 0.82643 0.94261 0.96755 1.21219 0.92681 1.17129 1.22426 0.91777 1.24984 0.95381 0.97408 0.97009 1.69972 0.97365 1.42598 1.44346 0.86494 0.78128 0.81996 0.81159 1.19618 1.21220 1.21147 1.22015 0.99974 0.93585 0.90769 1.22162 0.92375 0.88697 0.92977 0.91808 1.22211 1.02308 0.98684 0.95649 1.21555 0.99096 0.97172 0.97980 1.22201 0.99658 0.98608 0.98795 1.22486 1.01476 0.91897 0.86018 1.88070 1.49519 1.41192 1.48304 0.93113 0.93342 0.92770 0.91205 0.93454 0.93195 0.92350 0.91302 0.93073 0.96464 0.90060 0.99167 0.95443 0.93166 0.91541 0.95001 0.91322 0.91467 0.92077 0.91857 0.91496 0.91556 0.89493 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 2 C -0.10 -1.37 2.92 -90.62 -0.26 -1.64 16 3 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 4 C -0.10 -1.73 4.74 -26.73 -0.13 -1.85 16 5 C 0.06 1.26 4.48 -3.82 -0.02 1.25 16 6 N -0.53 -11.59 4.25 -236.07 -1.00 -12.60 16 7 C 0.19 5.01 4.59 -4.97 -0.02 4.99 16 8 C -0.50 -14.14 8.30 -34.44 -0.29 -14.43 16 9 H 0.06 1.85 7.79 -52.49 -0.41 1.44 16 10 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 11 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 C 0.07 1.22 4.48 -3.83 -0.02 1.20 16 17 C 0.10 1.72 2.55 -26.68 -0.07 1.65 16 18 H 0.06 1.30 6.28 -51.93 -0.33 0.97 16 19 C -0.15 -2.09 5.42 -26.59 -0.14 -2.24 16 20 C -0.12 -1.49 6.03 -26.55 -0.16 -1.65 16 21 C -0.15 -1.89 6.14 -26.59 -0.16 -2.06 16 22 C 0.06 0.89 6.84 37.20 0.25 1.14 16 23 O -0.35 -6.65 10.27 -35.23 -0.36 -7.01 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.80 6.66 -51.93 -0.35 0.45 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.81 6.93 -51.93 -0.36 0.45 16 33 H 0.02 0.33 6.63 -51.93 -0.34 -0.02 16 34 H 0.08 1.79 7.11 -51.93 -0.37 1.42 16 35 H -0.01 -0.27 8.05 -51.93 -0.42 -0.69 16 36 H 0.03 0.77 5.94 -51.93 -0.31 0.46 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.07 1.15 6.71 -51.93 -0.35 0.80 16 39 H 0.03 0.59 8.12 -51.93 -0.42 0.16 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -30.27 359.41 -9.80 -40.07 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -9.13 Total: -1.44 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -0.44 Total: -15.13 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.27 Total: -38.91 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.36 Total: -7.01 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.27 -9.80 -40.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173539607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.227 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds