Wall clock time and date at job start Mon Mar 30 2020 19:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47322 * 2 1 4 4 C 1.53004 * 109.46829 * 119.99792 * 2 1 3 5 5 C 1.50699 * 109.47085 * 294.99490 * 4 2 1 6 6 H 1.08000 * 120.00314 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00130 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00358 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99801 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47187 * 89.99828 * 9 7 5 11 11 H 1.48506 * 109.47099 * 209.99882 * 9 7 5 12 12 H 1.48496 * 109.47045 * 329.99426 * 9 7 5 13 13 C 1.52999 * 109.47171 * 239.99518 * 2 1 3 14 14 N 1.46903 * 109.46828 * 63.71638 * 13 2 1 15 15 C 1.46847 * 110.99634 * 75.81452 * 14 13 2 16 16 C 1.53041 * 109.52143 * 185.83551 * 15 14 13 17 17 C 1.53120 * 109.27850 * 300.82446 * 16 15 14 18 18 C 1.53003 * 109.52229 * 177.56004 * 17 16 15 19 19 H 1.09002 * 109.46984 * 300.12514 * 18 17 16 20 20 C 1.52996 * 109.47007 * 180.12581 * 18 17 16 21 21 C 1.52998 * 109.47216 * 60.12255 * 18 17 16 22 22 O 1.42903 * 109.47083 * 185.00163 * 21 18 17 23 23 C 1.53117 * 109.21536 * 57.61813 * 17 16 15 24 24 C 1.46844 * 110.99592 * 200.02025 * 14 13 2 25 25 H 1.09001 * 109.47281 * 185.41771 * 1 2 3 26 26 H 1.08998 * 109.47035 * 305.41281 * 1 2 3 27 27 H 1.08994 * 109.47192 * 65.41187 * 1 2 3 28 28 H 1.08994 * 109.47557 * 55.00199 * 4 2 1 29 29 H 1.09007 * 109.46848 * 175.00457 * 4 2 1 30 30 H 0.97001 * 119.99893 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47205 * 303.71955 * 13 2 1 32 32 H 1.08997 * 109.47096 * 183.71558 * 13 2 1 33 33 H 1.09005 * 109.46499 * 65.82690 * 15 14 13 34 34 H 1.08994 * 109.46496 * 305.85090 * 15 14 13 35 35 H 1.08997 * 109.50407 * 180.87933 * 16 15 14 36 36 H 1.09008 * 109.49786 * 60.76058 * 16 15 14 37 37 H 1.09002 * 109.52184 * 297.68008 * 17 16 15 38 38 H 1.09007 * 109.46773 * 179.97438 * 20 18 17 39 39 H 1.09002 * 109.47128 * 299.99252 * 20 18 17 40 40 H 1.08994 * 109.47183 * 59.99825 * 20 18 17 41 41 H 1.08999 * 109.47344 * 64.99998 * 21 18 17 42 42 H 1.09005 * 109.47347 * 304.99734 * 21 18 17 43 43 H 0.96699 * 114.00066 * 179.97438 * 22 21 18 44 44 H 1.09006 * 109.49817 * 62.32039 * 23 17 16 45 45 H 1.08999 * 109.50510 * 182.43469 * 23 17 16 46 46 H 1.09000 * 109.46845 * 294.17377 * 24 14 13 47 47 H 1.09000 * 109.46627 * 54.16192 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9923 -0.4020 3.7284 8 7 1.6449 0.2775 4.7994 9 14 2.9625 -1.9887 3.9030 10 1 4.4159 -1.6854 3.8793 11 1 2.6142 -2.6429 5.1899 12 1 2.6285 -2.8994 2.7786 13 6 2.0400 -0.7213 -1.2492 14 7 1.6250 0.0210 -2.4470 15 6 2.4476 1.2233 -2.6322 16 6 1.8964 2.0451 -3.7997 17 6 1.9129 1.1917 -5.0709 18 6 1.3067 1.9873 -6.2287 19 1 0.2795 2.2584 -5.9847 20 6 1.3209 1.1324 -7.4975 21 6 2.1280 3.2572 -6.4601 22 8 1.4965 4.0570 -7.4619 23 6 1.0900 -0.0780 -4.8362 24 6 1.6636 -0.8375 -3.6377 25 1 -0.3634 -1.0231 0.0970 26 1 -0.3633 0.5955 0.8375 27 1 -0.3633 0.4276 -0.9344 28 1 1.6054 -1.7197 1.2953 29 1 3.1263 -0.7994 1.2057 30 1 1.8915 -0.0458 5.6801 31 1 1.6233 -1.7280 -1.2831 32 1 3.1279 -0.7794 -1.2165 33 1 3.4753 0.9306 -2.8474 34 1 2.4238 1.8233 -1.7226 35 1 2.5164 2.9294 -3.9469 36 1 0.8733 2.3498 -3.5791 37 1 2.9402 0.9202 -5.3141 38 1 0.8886 1.6991 -8.3222 39 1 2.3481 0.8614 -7.7415 40 1 0.7358 0.2278 -7.3326 41 1 3.1308 2.9863 -6.7903 42 1 2.1921 3.8230 -5.5306 43 1 1.9635 4.8803 -7.6601 44 1 0.0539 0.1925 -4.6325 45 1 1.1342 -0.7095 -5.7235 46 1 2.6950 -1.1205 -3.8482 47 1 1.0703 -1.7341 -3.4585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602697708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:45:28 Heat of formation + Delta-G solvation = -82.233821 kcal Electronic energy + Delta-G solvation = -21476.005372 eV Core-core repulsion = 18464.257382 eV Total energy + Delta-G solvation = -3011.747990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 269.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.62876 -37.61674 -35.94173 -34.19083 -32.17541 -31.03764 -30.48771 -27.44571 -26.73595 -25.76133 -23.65233 -22.88521 -21.86055 -20.32539 -19.77711 -18.85078 -17.67476 -16.75111 -15.75116 -15.55582 -14.94552 -14.67054 -14.33443 -14.17954 -14.01921 -13.75665 -13.45115 -13.05518 -12.88820 -12.79299 -12.28278 -12.23848 -11.83834 -11.75823 -11.61098 -11.32769 -11.22587 -11.09906 -10.93213 -10.73176 -10.54691 -10.42846 -10.32792 -10.23045 -10.00198 -9.85623 -9.55521 -9.33104 -9.01952 -8.48838 -8.01254 -5.99252 -3.95776 3.32655 3.40218 3.44143 3.90821 4.10706 4.49140 4.52673 4.61064 4.79870 4.89039 5.07895 5.14259 5.22175 5.31229 5.34431 5.38159 5.41153 5.47661 5.59316 5.61777 5.65189 5.74321 5.80041 5.85384 5.87128 6.00750 6.03206 6.05718 6.10655 6.14780 6.21528 6.33942 6.37733 6.48897 6.67604 6.91444 7.10779 7.18142 7.31215 7.34276 7.36301 7.43198 7.56314 7.86537 8.61198 9.07128 9.63932 11.14318 Molecular weight = 269.21amu Principal moments of inertia in cm(-1) A = 0.038246 B = 0.003333 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.929888 B = 8399.464047 C = 8700.517844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 H 0.060 0.940 4 C -0.010 4.010 5 C -0.510 4.510 6 H 0.073 0.927 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.058 3.942 14 N -0.533 5.533 15 C 0.055 3.945 16 C -0.114 4.114 17 C -0.081 4.081 18 C -0.085 4.085 19 H 0.078 0.922 20 C -0.145 4.145 21 C 0.076 3.924 22 O -0.575 6.575 23 C -0.109 4.109 24 C 0.055 3.945 25 H 0.037 0.963 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.015 0.985 29 H 0.007 0.993 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.027 0.973 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.377 0.623 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.026 0.974 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 2.445 -24.270 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.048 4.048 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.069 4.069 14 N -0.257 5.257 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.100 4.100 18 C -0.103 4.103 19 H 0.097 0.903 20 C -0.202 4.202 21 C -0.001 4.001 22 O -0.380 6.380 23 C -0.147 4.147 24 C -0.073 4.073 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.223 0.777 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.947 2.082 -23.998 24.106 hybrid contribution 1.926 -0.660 0.250 2.051 sum 2.873 1.422 -23.748 23.963 Atomic orbital electron populations 1.21565 0.95353 1.00640 1.00436 1.20979 0.96288 0.99052 0.92487 0.92191 1.19636 0.95288 0.96217 0.93647 1.21138 1.35145 1.09468 0.89081 0.90847 1.25031 0.95753 0.96873 0.95977 1.69918 1.47374 1.39291 0.97986 0.86810 0.80574 0.84618 0.77446 1.20481 1.21504 1.19085 1.22331 0.97343 0.97204 0.90040 1.61918 1.54242 1.06937 1.02601 1.22104 0.93830 0.92479 0.98909 1.21727 1.02320 0.97414 0.93675 1.21191 0.99336 0.95488 0.93954 1.21142 1.00313 0.93535 0.95356 0.90345 1.21813 1.01503 0.99572 0.97282 1.22357 0.95111 0.92154 0.90511 1.86468 1.54592 1.36652 1.60274 1.21652 1.00274 0.95773 0.96958 1.22078 0.98806 0.95882 0.90517 0.94360 0.92634 0.93440 0.96701 0.97521 0.92873 0.91540 0.95334 0.95507 0.90071 0.91817 0.90832 0.91606 0.92245 0.93162 0.92369 0.93970 0.93126 0.77674 0.90963 0.91605 0.95581 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.86 37.16 0.33 -2.06 16 2 C -0.07 -1.38 2.39 -90.62 -0.22 -1.59 16 3 H 0.06 1.24 6.73 -51.93 -0.35 0.89 16 4 C -0.01 -0.24 3.52 -27.88 -0.10 -0.34 16 5 C -0.51 -14.55 9.03 -34.44 -0.31 -14.86 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.22 13.96 55.43 0.77 -27.45 16 9 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 13 C 0.06 0.96 4.41 -3.82 -0.02 0.95 16 14 N -0.53 -7.56 3.89 -234.66 -0.91 -8.47 16 15 C 0.05 0.72 5.29 -3.83 -0.02 0.70 16 16 C -0.11 -1.21 4.96 -26.65 -0.13 -1.35 16 17 C -0.08 -0.77 1.84 -90.50 -0.17 -0.94 16 18 C -0.08 -0.77 2.21 -90.62 -0.20 -0.97 16 19 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.14 -1.23 8.74 37.16 0.32 -0.90 16 21 C 0.08 0.63 6.21 37.16 0.23 0.86 16 22 O -0.57 -5.01 13.20 -35.23 -0.46 -5.47 16 23 C -0.11 -1.09 4.96 -26.65 -0.13 -1.23 16 24 C 0.06 0.66 5.42 -3.83 -0.02 0.64 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 1.19 7.12 -51.93 -0.37 0.82 16 27 H 0.05 0.84 7.56 -51.93 -0.39 0.44 16 28 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 29 H 0.01 0.16 7.57 -51.93 -0.39 -0.24 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.07 1.08 7.79 -51.93 -0.40 0.68 16 32 H 0.03 0.47 8.00 -51.93 -0.42 0.06 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 1.17 6.67 -51.93 -0.35 0.83 16 35 H 0.06 0.60 6.47 -51.93 -0.34 0.26 16 36 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.47 6.49 -51.93 -0.34 0.13 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.05 0.40 6.24 -51.93 -0.32 0.08 16 43 H 0.38 1.63 9.12 45.56 0.42 2.04 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.57 6.58 -51.93 -0.34 0.23 16 46 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -31.40 350.75 -8.66 -40.06 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -8.14 Total: -1.98 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -0.53 Total: -19.30 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.14 Total: -35.92 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.46 Total: -5.47 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.40 -8.66 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602697708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.177 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds