Wall clock time and date at job start Mon Mar 30 2020 19:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47322 * 2 1 4 4 C 1.53004 * 109.46829 * 119.99792 * 2 1 3 5 5 C 1.50699 * 109.47085 * 294.99490 * 4 2 1 6 6 H 1.08000 * 120.00314 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00130 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00358 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99801 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47187 * 89.99828 * 9 7 5 11 11 H 1.48506 * 109.47099 * 209.99882 * 9 7 5 12 12 H 1.48496 * 109.47045 * 329.99426 * 9 7 5 13 13 C 1.52999 * 109.47171 * 239.99518 * 2 1 3 14 14 N 1.46903 * 109.46828 * 63.71638 * 13 2 1 15 15 C 1.46847 * 110.99634 * 75.81452 * 14 13 2 16 16 C 1.53041 * 109.52143 * 185.83551 * 15 14 13 17 17 C 1.53120 * 109.27850 * 300.82446 * 16 15 14 18 18 C 1.53003 * 109.52229 * 177.56004 * 17 16 15 19 19 H 1.09002 * 109.46984 * 300.12514 * 18 17 16 20 20 C 1.52996 * 109.47007 * 180.12581 * 18 17 16 21 21 C 1.52998 * 109.47216 * 60.12255 * 18 17 16 22 22 O 1.42903 * 109.47083 * 185.00163 * 21 18 17 23 23 C 1.53117 * 109.21536 * 57.61813 * 17 16 15 24 24 C 1.46844 * 110.99592 * 200.02025 * 14 13 2 25 25 H 1.09001 * 109.47281 * 185.41771 * 1 2 3 26 26 H 1.08998 * 109.47035 * 305.41281 * 1 2 3 27 27 H 1.08994 * 109.47192 * 65.41187 * 1 2 3 28 28 H 1.08994 * 109.47557 * 55.00199 * 4 2 1 29 29 H 1.09007 * 109.46848 * 175.00457 * 4 2 1 30 30 H 0.97001 * 119.99893 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47205 * 303.71955 * 13 2 1 32 32 H 1.08997 * 109.47096 * 183.71558 * 13 2 1 33 33 H 1.09005 * 109.46499 * 65.82690 * 15 14 13 34 34 H 1.08994 * 109.46496 * 305.85090 * 15 14 13 35 35 H 1.08997 * 109.50407 * 180.87933 * 16 15 14 36 36 H 1.09008 * 109.49786 * 60.76058 * 16 15 14 37 37 H 1.09002 * 109.52184 * 297.68008 * 17 16 15 38 38 H 1.09007 * 109.46773 * 179.97438 * 20 18 17 39 39 H 1.09002 * 109.47128 * 299.99252 * 20 18 17 40 40 H 1.08994 * 109.47183 * 59.99825 * 20 18 17 41 41 H 1.08999 * 109.47344 * 64.99998 * 21 18 17 42 42 H 1.09005 * 109.47347 * 304.99734 * 21 18 17 43 43 H 0.96699 * 114.00066 * 179.97438 * 22 21 18 44 44 H 1.09006 * 109.49817 * 62.32039 * 23 17 16 45 45 H 1.08999 * 109.50510 * 182.43469 * 23 17 16 46 46 H 1.09000 * 109.46845 * 294.17377 * 24 14 13 47 47 H 1.09000 * 109.46627 * 54.16192 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9923 -0.4020 3.7284 8 7 1.6449 0.2775 4.7994 9 14 2.9625 -1.9887 3.9030 10 1 4.4159 -1.6854 3.8793 11 1 2.6142 -2.6429 5.1899 12 1 2.6285 -2.8994 2.7786 13 6 2.0400 -0.7213 -1.2492 14 7 1.6250 0.0210 -2.4470 15 6 2.4476 1.2233 -2.6322 16 6 1.8964 2.0451 -3.7997 17 6 1.9129 1.1917 -5.0709 18 6 1.3067 1.9873 -6.2287 19 1 0.2795 2.2584 -5.9847 20 6 1.3209 1.1324 -7.4975 21 6 2.1280 3.2572 -6.4601 22 8 1.4965 4.0570 -7.4619 23 6 1.0900 -0.0780 -4.8362 24 6 1.6636 -0.8375 -3.6377 25 1 -0.3634 -1.0231 0.0970 26 1 -0.3633 0.5955 0.8375 27 1 -0.3633 0.4276 -0.9344 28 1 1.6054 -1.7197 1.2953 29 1 3.1263 -0.7994 1.2057 30 1 1.8915 -0.0458 5.6801 31 1 1.6233 -1.7280 -1.2831 32 1 3.1279 -0.7794 -1.2165 33 1 3.4753 0.9306 -2.8474 34 1 2.4238 1.8233 -1.7226 35 1 2.5164 2.9294 -3.9469 36 1 0.8733 2.3498 -3.5791 37 1 2.9402 0.9202 -5.3141 38 1 0.8886 1.6991 -8.3222 39 1 2.3481 0.8614 -7.7415 40 1 0.7358 0.2278 -7.3326 41 1 3.1308 2.9863 -6.7903 42 1 2.1921 3.8230 -5.5306 43 1 1.9635 4.8803 -7.6601 44 1 0.0539 0.1925 -4.6325 45 1 1.1342 -0.7095 -5.7235 46 1 2.6950 -1.1205 -3.8482 47 1 1.0703 -1.7341 -3.4585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602697708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:45:27 Heat of formation + Delta-G solvation = -103.135706 kcal Electronic energy + Delta-G solvation = -21476.911746 eV Core-core repulsion = 18464.257382 eV Total energy + Delta-G solvation = -3012.654363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 269.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54997 -38.52408 -37.10682 -35.49157 -34.12950 -31.96108 -31.55645 -29.33324 -27.51061 -26.99329 -25.03404 -23.79407 -23.39706 -21.17145 -20.61197 -20.47750 -18.91867 -18.31720 -16.89595 -16.39652 -16.12399 -15.99278 -15.56121 -15.39276 -15.17071 -14.83738 -14.60644 -14.48404 -14.08803 -13.85317 -13.57947 -13.41428 -13.32072 -12.86718 -12.73564 -12.59678 -12.49215 -12.26920 -12.13576 -12.07807 -11.85494 -11.78089 -11.47317 -11.37758 -11.27529 -11.13905 -11.02334 -10.83437 -10.73121 -10.66871 -9.13351 -8.25779 -6.28096 1.35371 1.37503 1.49429 2.37884 3.01300 3.09405 3.31991 3.75185 3.85481 3.98688 4.12662 4.14370 4.31114 4.33432 4.40509 4.48604 4.51499 4.53763 4.57351 4.64781 4.70200 4.78351 4.83357 4.89164 4.93113 4.95392 5.02547 5.04131 5.07075 5.10070 5.15351 5.21644 5.29506 5.32729 5.40088 5.44500 5.48994 5.55725 5.60753 5.72026 5.74362 6.20501 6.33083 6.37187 6.79733 6.93073 7.35415 8.91203 Molecular weight = 269.21amu Principal moments of inertia in cm(-1) A = 0.038246 B = 0.003333 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.929888 B = 8399.464047 C = 8700.517844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.065 4.065 3 H 0.045 0.955 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.032 0.968 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.246 1.246 13 C 0.070 3.930 14 N -0.541 5.541 15 C 0.054 3.946 16 C -0.108 4.108 17 C -0.073 4.073 18 C -0.083 4.083 19 H 0.063 0.937 20 C -0.141 4.141 21 C 0.076 3.924 22 O -0.593 6.593 23 C -0.104 4.104 24 C 0.055 3.945 25 H 0.041 0.959 26 H 0.023 0.977 27 H 0.065 0.935 28 H 0.018 0.982 29 H 0.013 0.987 30 H 0.264 0.736 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.394 0.606 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.033 0.967 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 0.884 -26.593 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 H 0.064 0.936 4 C -0.044 4.044 5 C -0.556 4.556 6 H 0.051 0.949 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.772 3.228 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.170 1.170 13 C -0.058 4.058 14 N -0.266 5.266 15 C -0.074 4.074 16 C -0.145 4.145 17 C -0.091 4.091 18 C -0.101 4.101 19 H 0.082 0.918 20 C -0.198 4.198 21 C -0.002 4.002 22 O -0.401 6.401 23 C -0.142 4.142 24 C -0.073 4.073 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.037 0.963 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.244 0.756 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.051 0.949 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.147 0.538 -26.356 26.448 hybrid contribution 1.495 -0.049 0.960 1.777 sum 3.642 0.489 -25.396 25.660 Atomic orbital electron populations 1.21450 0.95169 1.00336 0.99996 1.20850 0.96362 0.98304 0.92875 0.93622 1.19580 0.95589 0.95911 0.93344 1.21448 1.34254 1.08571 0.91285 0.94926 1.26015 0.97083 1.00973 0.95496 1.70079 1.49230 1.41619 0.98716 0.85679 0.79124 0.79920 0.78041 1.19327 1.21167 1.16972 1.22063 0.97225 0.97097 0.89422 1.61853 1.54516 1.07412 1.02828 1.22116 0.94219 0.92119 0.98959 1.21681 1.01673 0.97813 0.93374 1.21111 0.99687 0.95027 0.93324 1.21084 0.99564 0.94101 0.95382 0.91839 1.21776 1.01997 0.99466 0.96560 1.22354 0.95336 0.91841 0.90646 1.86421 1.55504 1.37860 1.60343 1.21630 0.99591 0.96102 0.96857 1.22157 0.99430 0.95808 0.89909 0.93948 0.95803 0.91585 0.96325 0.96911 0.92688 0.90758 0.95201 0.94962 0.92185 0.90392 0.92071 0.90819 0.93083 0.92385 0.91883 0.92865 0.92975 0.75616 0.91909 0.89726 0.94916 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.86 71.98 0.64 -3.75 16 2 C -0.06 -2.58 2.39 -10.79 -0.03 -2.60 16 3 H 0.05 1.93 6.73 -2.38 -0.02 1.91 16 4 C -0.01 -0.30 3.52 29.85 0.10 -0.20 16 5 C -0.52 -30.27 9.03 25.60 0.23 -30.04 16 6 H 0.03 2.11 7.30 -2.91 -0.02 2.09 16 7 C 0.00 0.01 5.47 84.65 0.46 0.48 16 8 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 9 Si 0.95 45.01 27.47 68.60 1.88 46.89 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 13 C 0.07 2.19 4.41 86.30 0.38 2.57 16 14 N -0.54 -14.45 3.89 -896.34 -3.49 -17.94 16 15 C 0.05 1.34 5.29 86.33 0.46 1.80 16 16 C -0.11 -2.14 4.96 30.65 0.15 -1.98 16 17 C -0.07 -1.21 1.84 -10.71 -0.02 -1.23 16 18 C -0.08 -1.33 2.21 -10.79 -0.02 -1.36 16 19 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 20 C -0.14 -2.07 8.74 71.98 0.63 -1.44 16 21 C 0.08 1.10 6.21 71.98 0.45 1.55 16 22 O -0.59 -9.32 13.20 -148.98 -1.97 -11.29 16 23 C -0.10 -1.83 4.96 30.65 0.15 -1.67 16 24 C 0.05 1.15 5.42 86.33 0.47 1.62 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.02 1.04 7.12 -2.39 -0.02 1.02 16 27 H 0.07 2.30 7.56 -2.39 -0.02 2.28 16 28 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 29 H 0.01 0.58 7.57 -2.38 -0.02 0.57 16 30 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.07 2.22 7.79 -2.39 -0.02 2.20 16 32 H 0.03 0.93 8.00 -2.39 -0.02 0.91 16 33 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.06 1.74 6.67 -2.39 -0.02 1.72 16 35 H 0.08 1.32 6.47 -2.39 -0.02 1.31 16 36 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 0.84 7.82 -2.38 -0.02 0.82 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.85 6.49 -2.39 -0.02 0.83 16 41 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.05 0.73 6.24 -2.38 -0.01 0.71 16 43 H 0.39 2.72 9.12 -74.06 -0.68 2.04 16 44 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.08 1.20 6.58 -2.39 -0.02 1.18 16 46 H 0.03 0.66 8.14 -2.39 -0.02 0.65 16 47 H 0.08 1.56 7.93 -2.39 -0.02 1.55 16 Total: -1.00 -68.37 350.75 0.96 -67.40 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.18 Total: 12.00 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 4.05 Total: -36.26 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -3.19 Total: -78.74 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.97 Total: -11.29 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -68.37 0.96 -67.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602697708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.731 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds