Wall clock time and date at job start Mon Mar 30 2020 19:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38449 * 119.83443 * 2 1 4 4 C 1.37899 * 120.20063 * 180.02562 * 3 2 1 5 5 C 1.39617 * 119.88105 * 359.97438 * 4 3 2 6 6 C 1.47933 * 120.16151 * 179.97438 * 5 4 3 7 7 C 1.39986 * 119.87924 * 64.99694 * 6 5 4 8 8 C 1.36223 * 120.11381 * 179.97438 * 7 6 5 9 9 C 1.40955 * 119.87778 * 0.29782 * 8 7 6 10 10 C 1.41013 * 120.11275 * 179.70579 * 9 8 7 11 11 H 1.08001 * 120.00104 * 24.57250 * 10 9 8 12 12 C 1.39996 * 120.00197 * 204.57460 * 10 9 8 13 13 N 1.30807 * 119.99960 * 17.81981 * 12 10 9 14 14 Si 1.86799 * 120.00247 * 197.81901 * 12 10 9 15 15 H 1.48500 * 109.47184 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47019 * 119.99887 * 14 12 10 17 17 H 1.48500 * 109.47188 * 239.99530 * 14 12 10 18 18 C 1.40923 * 119.77319 * 359.44705 * 9 8 7 19 19 C 1.36256 * 119.87639 * 0.51183 * 18 9 8 20 20 C 1.50700 * 119.94111 * 179.76408 * 19 18 9 21 21 C 1.39830 * 119.67977 * 0.26829 * 5 4 3 22 22 F 1.35099 * 120.10407 * 179.72709 * 21 5 4 23 23 C 1.38231 * 119.79214 * 359.47504 * 21 5 4 24 24 H 1.09000 * 109.47521 * 89.99950 * 1 2 3 25 25 H 1.09001 * 109.47329 * 210.00013 * 1 2 3 26 26 H 1.09001 * 109.47375 * 329.99702 * 1 2 3 27 27 H 1.08000 * 119.90292 * 0.02562 * 3 2 1 28 28 H 1.08008 * 120.05936 * 179.97438 * 4 3 2 29 29 H 1.07995 * 119.94387 * 359.97438 * 7 6 5 30 30 H 1.08004 * 120.05666 * 180.02562 * 8 7 6 31 31 H 0.97001 * 120.00619 * 180.02562 * 13 12 10 32 32 H 1.07993 * 120.06117 * 180.29924 * 18 9 8 33 33 H 1.08999 * 109.47262 * 270.02645 * 20 19 18 34 34 H 1.09011 * 109.46813 * 30.02242 * 20 19 18 35 35 H 1.09002 * 109.47082 * 150.01834 * 20 19 18 36 36 H 1.07994 * 119.94227 * 180.25287 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2010 0.0000 4 6 3.5747 1.2098 -0.0005 5 6 4.2780 0.0037 -0.0005 6 6 5.7573 0.0059 -0.0017 7 6 6.4548 0.5205 1.0976 8 6 7.8170 0.5244 1.1018 9 6 8.5241 0.0149 -0.0060 10 6 9.9342 0.0222 -0.0095 11 1 10.4765 0.0302 0.9244 12 6 10.6312 0.0191 -1.2236 13 7 10.0198 0.3565 -2.3296 14 14 12.4345 -0.4668 -1.2642 15 1 12.8876 -0.8028 0.1095 16 1 12.6088 -1.6492 -2.1455 17 1 13.2403 0.6648 -1.7889 18 6 7.8170 -0.5069 -1.1077 19 6 6.4545 -0.5068 -1.1014 20 6 5.6968 -1.0596 -2.2811 21 6 3.5773 -1.2064 -0.0057 22 9 4.2492 -2.3784 -0.0113 23 6 2.1950 -1.1996 0.0003 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6515 2.1338 0.0004 28 1 4.1097 2.1481 -0.0009 29 1 5.9120 0.9150 1.9438 30 1 8.3542 0.9213 1.9506 31 1 10.5025 0.3541 -3.1710 32 1 8.3541 -0.9029 -1.9568 33 1 5.5126 -0.2619 -3.0007 34 1 6.2844 -1.8468 -2.7537 35 1 4.7457 -1.4700 -1.9420 36 1 1.6515 -2.1328 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241355708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:54:22 Heat of formation + Delta-G solvation = -22.014524 kcal Electronic energy + Delta-G solvation = -19695.892242 eV Core-core repulsion = 16637.052415 eV Total energy + Delta-G solvation = -3058.839827 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.32082 -38.98466 -37.53613 -34.19018 -32.52165 -31.54241 -30.19125 -29.56386 -27.05339 -25.86611 -24.42231 -22.39643 -21.57205 -20.38995 -19.54954 -17.14950 -16.62815 -15.97840 -15.83241 -15.32434 -15.14346 -13.99246 -13.78413 -13.63740 -13.53554 -13.44141 -13.03273 -12.65091 -12.62564 -12.07667 -11.89461 -11.75062 -11.48114 -11.38526 -11.32060 -11.16240 -11.09013 -10.73935 -10.50767 -10.33418 -9.63184 -9.47921 -9.17310 -8.56085 -8.15175 -7.39305 -7.22969 -6.83530 -4.40834 1.49706 1.56733 2.67400 3.03283 3.07859 3.08806 3.13163 3.87148 3.94049 4.50904 4.64855 5.00617 5.05170 5.40134 5.43498 5.53839 5.58506 5.62707 5.75584 5.86701 6.05705 6.13393 6.28245 6.34534 6.42535 6.48563 6.52490 6.68925 6.73802 6.83564 6.88996 6.99837 7.25105 7.28777 7.33751 7.59617 7.85881 8.00435 8.09019 8.23886 8.56961 8.81391 8.92437 10.08399 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.039363 B = 0.004446 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.153543 B = 6296.982002 C = 6465.086953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.087 4.087 3 C -0.131 4.131 4 C -0.093 4.093 5 C -0.018 4.018 6 C -0.208 4.208 7 C -0.061 4.061 8 C -0.233 4.233 9 C 0.120 3.880 10 C -0.454 4.454 11 H 0.080 0.920 12 C 0.076 3.924 13 N -0.783 5.783 14 Si 0.908 3.092 15 H -0.259 1.259 16 H -0.271 1.271 17 H -0.274 1.274 18 C -0.168 4.168 19 C -0.041 4.041 20 C -0.108 4.108 21 C 0.096 3.904 22 F -0.135 7.135 23 C -0.159 4.159 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.282 0.718 32 H 0.119 0.881 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 -0.262 1.052 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.087 4.087 3 C -0.150 4.150 4 C -0.111 4.111 5 C -0.019 4.019 6 C -0.209 4.209 7 C -0.079 4.079 8 C -0.252 4.252 9 C 0.117 3.883 10 C -0.483 4.483 11 H 0.098 0.902 12 C -0.143 4.143 13 N -0.408 5.408 14 Si 0.732 3.268 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.199 1.199 18 C -0.187 4.187 19 C -0.041 4.041 20 C -0.164 4.164 21 C 0.076 3.924 22 F -0.113 7.113 23 C -0.177 4.177 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.137 0.863 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.702 -0.269 0.792 11.732 hybrid contribution 1.002 -0.324 -0.132 1.062 sum -10.700 -0.593 0.660 10.737 Atomic orbital electron populations 1.20723 0.91204 1.02468 1.02068 1.19596 0.95735 0.92338 1.01034 1.20941 0.94155 0.97216 1.02651 1.21272 0.93333 0.97563 0.98932 1.19043 0.94481 0.90804 0.97561 1.17708 0.88305 1.16738 0.98197 1.20223 0.94120 0.98081 0.95522 1.20640 0.93161 1.10255 1.01164 1.17675 0.93243 0.86721 0.90613 1.19654 0.91659 1.43701 0.93300 0.90175 1.25979 1.01103 0.92196 0.95066 1.69833 1.38689 1.32275 0.99983 0.86258 0.81682 0.79078 0.79743 1.18270 1.19582 1.19885 1.20840 0.91577 1.05274 1.00994 1.19176 0.93983 0.97432 0.93515 1.20764 0.99275 0.99771 0.96636 1.17922 0.89432 0.81524 1.03490 1.91476 1.80736 1.45443 1.93665 1.20833 0.92161 0.98781 1.05969 0.91404 0.91812 0.91647 0.86142 0.85377 0.89358 0.88850 0.90718 0.86323 0.92725 0.92764 0.92977 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.00 36.00 0.36 -0.67 16 2 C -0.09 -1.16 5.89 -104.53 -0.62 -1.77 16 3 C -0.13 -1.82 9.68 -39.63 -0.38 -2.20 16 4 C -0.09 -1.55 9.74 -39.19 -0.38 -1.93 16 5 C -0.02 -0.35 4.62 -104.82 -0.48 -0.83 16 6 C -0.21 -4.73 5.04 -104.63 -0.53 -5.26 16 7 C -0.06 -1.40 9.66 -39.65 -0.38 -1.79 16 8 C -0.23 -5.75 9.73 -39.28 -0.38 -6.13 16 9 C 0.12 3.20 5.57 -106.80 -0.60 2.61 16 10 C -0.45 -11.94 9.03 -37.87 -0.34 -12.28 16 11 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 12 C 0.08 1.87 5.13 -17.33 -0.09 1.78 16 13 N -0.78 -19.95 10.96 55.55 0.61 -19.34 16 14 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 15 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 16 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 18 C -0.17 -4.39 8.26 -39.28 -0.32 -4.71 16 19 C -0.04 -0.97 5.70 -104.70 -0.60 -1.57 16 20 C -0.11 -2.23 9.46 36.01 0.34 -1.89 16 21 C 0.10 1.75 5.75 -38.99 -0.22 1.53 16 22 F -0.13 -2.69 15.53 2.25 0.03 -2.66 16 23 C -0.16 -2.38 9.66 -39.56 -0.38 -2.76 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 28 H 0.13 2.05 8.06 -52.48 -0.42 1.62 16 29 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 31 H 0.28 6.48 8.30 -40.82 -0.34 6.15 16 32 H 0.12 3.20 6.17 -52.49 -0.32 2.87 16 33 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 1.07 8.08 -51.92 -0.42 0.65 16 35 H 0.05 1.02 4.70 -51.93 -0.24 0.78 16 36 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 308.23 15.07 4.64 4.64 Total: -1.00 -27.68 308.23 -9.09 -36.77 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -4.34 Total: 5.13 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: -5.01 Total: -37.87 kcal Atomic # 7 Polarization: -19.95 SS G_CDS: 0.61 Total: -19.34 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.03 Total: -2.66 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.68 -9.09 -36.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241355708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.758 kcal (2) G-P(sol) polarization free energy of solvation -27.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds