Wall clock time and date at job start Mon Mar 30 2020 19:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99753 * 2 1 4 4 H 1.48497 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.46839 * 299.99262 * 3 2 1 6 6 H 1.48497 * 109.47476 * 59.99794 * 3 2 1 7 7 C 1.38809 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00375 * 197.58515 * 7 2 1 9 9 N 1.36940 * 119.99722 * 17.59740 * 7 2 1 10 10 C 1.46968 * 120.59089 * 208.16339 * 9 7 2 11 11 C 1.53371 * 108.62889 * 235.19976 * 10 9 7 12 12 N 1.46962 * 108.63794 * 310.57208 * 11 10 9 13 13 C 1.34783 * 120.59822 * 235.20985 * 12 11 10 14 14 O 1.21280 * 119.99773 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00101 * 180.02562 * 13 12 11 16 16 H 1.09009 * 109.52504 * 304.99235 * 15 13 12 17 17 C 1.53136 * 109.52643 * 65.12715 * 15 13 12 18 18 O 1.43080 * 109.15156 * 175.27961 * 17 15 13 19 19 C 1.43072 * 113.59135 * 302.04776 * 18 17 15 20 20 C 1.53149 * 109.14957 * 57.95326 * 19 18 17 21 21 O 1.43067 * 109.14924 * 304.68152 * 20 19 18 22 22 C 1.46965 * 118.80975 * 55.48028 * 12 11 10 23 23 C 1.46964 * 120.59619 * 28.13046 * 9 7 2 24 24 H 0.96998 * 120.00139 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.61340 * 115.45875 * 10 9 7 26 26 H 1.08999 * 109.60846 * 354.93999 * 10 9 7 27 27 H 1.09006 * 109.60432 * 190.83286 * 11 10 9 28 28 H 1.08994 * 109.75794 * 70.40652 * 11 10 9 29 29 H 1.08997 * 109.52526 * 295.17739 * 17 15 13 30 30 H 1.08996 * 109.52598 * 55.31343 * 17 15 13 31 31 H 1.09004 * 109.52314 * 177.85101 * 19 18 17 32 32 H 1.08994 * 109.52413 * 297.98457 * 19 18 17 33 33 H 1.08995 * 109.52234 * 64.59077 * 20 19 18 34 34 H 1.09006 * 109.52079 * 184.71773 * 20 19 18 35 35 H 1.09000 * 109.61199 * 64.26879 * 22 12 11 36 36 H 1.08997 * 109.60973 * 184.78177 * 22 12 11 37 37 H 1.09001 * 109.60944 * 244.54356 * 23 9 7 38 38 H 1.08995 * 109.61117 * 5.05736 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0523 -1.2239 0.2831 9 7 1.3736 -2.3604 -0.3575 10 6 1.8129 -3.6538 0.1850 11 6 2.1166 -4.5980 -0.9847 12 7 0.9816 -4.5701 -1.9178 13 6 0.3549 -5.7102 -2.2701 14 8 0.7269 -6.7717 -1.8166 15 6 -0.8073 -5.6660 -3.2284 16 1 -1.5645 -4.9785 -2.8513 17 6 -0.3215 -5.1901 -4.6005 18 8 -1.4062 -5.2561 -5.5313 19 6 -1.9705 -6.5645 -5.6610 20 6 -2.4563 -7.0404 -4.2888 21 8 -1.3717 -6.9744 -3.3582 22 6 0.5458 -3.2774 -2.4646 23 6 0.2385 -2.3325 -1.2905 24 1 -0.4850 0.8400 -0.0004 25 1 1.0218 -4.0791 0.8026 26 1 2.7124 -3.5126 0.7843 27 1 2.2569 -5.6118 -0.6095 28 1 3.0203 -4.2698 -1.4981 29 1 0.0318 -4.1617 -4.5253 30 1 0.4918 -5.8307 -4.9413 31 1 -2.8114 -6.5314 -6.3538 32 1 -1.2138 -7.2517 -6.0391 33 1 -3.2688 -6.3990 -3.9475 34 1 -2.8108 -8.0684 -4.3643 35 1 1.3397 -2.8542 -3.0801 36 1 -0.3515 -3.4188 -3.0669 37 1 -0.6646 -2.6638 -0.7779 38 1 0.0982 -1.3188 -1.6657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104052257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:48:53 Heat of formation + Delta-G solvation = -80.373331 kcal Electronic energy + Delta-G solvation = -21937.246972 eV Core-core repulsion = 18588.487559 eV Total energy + Delta-G solvation = -3348.759413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59241 -38.99583 -36.89881 -36.00811 -34.02865 -32.33608 -31.04145 -30.16937 -28.35119 -26.90781 -25.14290 -23.63993 -22.93412 -21.92106 -20.52267 -18.95752 -17.60811 -16.94738 -16.75038 -16.20020 -16.11246 -15.58645 -15.25349 -14.74214 -14.48560 -14.22740 -13.72200 -13.54778 -13.40995 -13.36380 -13.00814 -12.59571 -12.27524 -11.79345 -11.58802 -11.37446 -10.97143 -10.89694 -10.80540 -10.70959 -10.50403 -10.30148 -10.04698 -9.88828 -9.48224 -9.25379 -8.66007 -8.34461 -6.77818 -5.90958 -3.35286 2.76577 2.90383 3.30675 3.39520 3.41377 3.51101 3.86787 4.37973 4.40738 4.60004 4.76065 4.81874 4.94385 5.01626 5.16084 5.27691 5.28748 5.40491 5.54126 5.57797 5.71437 5.77495 5.86359 6.00730 6.11818 6.25005 6.34953 6.68351 6.73093 6.78858 6.90528 7.12343 7.37928 7.67629 7.76851 8.30194 8.42516 9.06528 9.69022 10.25739 11.17029 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.004990 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.819556 B = 5610.345094 C = 6165.069390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.097 3.903 12 N -0.593 5.593 13 C 0.519 3.481 14 O -0.535 6.535 15 C 0.039 3.961 16 H 0.096 0.904 17 C 0.031 3.969 18 O -0.373 6.373 19 C 0.020 3.980 20 C 0.022 3.978 21 O -0.351 6.351 22 C 0.069 3.931 23 C 0.157 3.843 24 H 0.255 0.745 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 -9.513 -10.347 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.314 5.314 10 C 0.004 3.996 11 C -0.026 4.026 12 N -0.327 5.327 13 C 0.305 3.695 14 O -0.412 6.412 15 C -0.022 4.022 16 H 0.113 0.887 17 C -0.046 4.046 18 O -0.291 6.291 19 C -0.057 4.057 20 C -0.055 4.055 21 O -0.269 6.269 22 C -0.055 4.055 23 C 0.031 3.969 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.139 0.861 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.105 -9.918 -10.074 14.474 hybrid contribution 0.208 0.940 0.000 0.963 sum -2.897 -8.978 -10.074 13.802 Atomic orbital electron populations 1.70020 1.05334 1.25702 1.53589 1.25069 0.95291 0.98577 1.00543 0.86202 0.79411 0.83677 0.77360 1.20167 1.21431 1.21659 1.19255 0.92935 0.84623 1.41735 0.91323 1.44002 1.36574 1.01621 1.49174 1.21315 0.98586 0.86972 0.92728 1.22250 0.87309 1.01295 0.91771 1.48001 1.32967 1.06320 1.45373 1.19797 0.83372 0.84178 0.82146 1.90668 1.65656 1.29466 1.55361 1.22550 0.96487 0.87132 0.96028 0.88691 1.23413 0.89584 1.04243 0.87390 1.88134 1.49849 1.29212 1.61909 1.23302 0.99366 0.85439 0.97549 1.23324 0.89678 1.03319 0.89143 1.88215 1.49452 1.27081 1.62184 1.23038 0.99224 0.84055 0.99192 1.21273 0.89367 0.98605 0.87698 0.93468 0.95738 0.91317 0.89864 0.91631 0.86144 0.91577 0.87582 0.91990 0.91825 0.87379 0.91166 0.90726 0.95681 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.94 11.20 55.49 0.62 -24.32 16 2 C 0.00 0.11 4.90 -17.43 -0.09 0.02 16 3 Si 0.90 20.71 29.59 -169.99 -5.03 15.68 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.26 -6.67 9.58 -15.06 -0.14 -6.81 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.05 2.97 -171.77 -0.51 -14.56 16 10 C 0.13 2.69 6.67 -3.59 -0.02 2.67 16 11 C 0.10 1.76 6.59 -3.60 -0.02 1.74 16 12 N -0.59 -10.56 2.94 -172.22 -0.51 -11.07 16 13 C 0.52 9.40 7.12 -10.99 -0.08 9.32 16 14 O -0.53 -11.40 15.92 -14.23 -0.23 -11.62 16 15 C 0.04 0.59 2.41 -27.82 -0.07 0.53 16 16 H 0.10 1.37 7.48 -51.92 -0.39 0.98 16 17 C 0.03 0.40 5.90 37.23 0.22 0.62 16 18 O -0.37 -4.66 10.85 -48.80 -0.53 -5.19 16 19 C 0.02 0.20 7.05 37.23 0.26 0.46 16 20 C 0.02 0.24 7.05 37.23 0.26 0.50 16 21 O -0.35 -5.40 10.04 -62.49 -0.63 -6.03 16 22 C 0.07 1.18 5.32 -3.37 -0.02 1.16 16 23 C 0.16 3.46 5.53 -3.37 -0.02 3.44 16 24 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 27 H 0.08 1.49 6.99 -51.93 -0.36 1.12 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.12 1.45 5.43 -51.93 -0.28 1.17 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.08 4.49 -51.93 -0.23 0.85 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 2.47 5.99 -51.93 -0.31 2.16 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -31.65 300.73 -7.33 -38.98 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.34 Total: -0.05 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 0.29 Total: 13.64 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.39 Total: -49.95 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -1.38 Total: -22.84 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.65 -7.33 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104052257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.389 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds