Wall clock time and date at job start Mon Mar 30 2020 19:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46912 * 109.46790 * 2 1 4 4 C 1.46898 * 109.47019 * 240.00465 * 2 1 3 5 5 C 1.46894 * 109.47513 * 119.99635 * 2 1 3 6 6 C 1.53009 * 109.46832 * 64.51001 * 5 2 1 7 7 H 1.08998 * 109.46975 * 53.28953 * 6 5 2 8 8 C 1.50697 * 109.47203 * 173.29319 * 6 5 2 9 9 H 1.07997 * 119.99639 * 239.99994 * 8 6 5 10 10 C 1.37874 * 120.00391 * 59.99617 * 8 6 5 11 11 N 1.31517 * 119.99847 * 0.02562 * 10 8 6 12 12 Si 1.86796 * 120.00330 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46897 * 90.00180 * 12 10 8 14 14 H 1.48496 * 109.47491 * 210.00245 * 12 10 8 15 15 H 1.48504 * 109.46988 * 330.00332 * 12 10 8 16 16 O 1.42902 * 109.46863 * 293.29159 * 6 5 2 17 17 C 1.42895 * 114.00135 * 149.99822 * 16 6 5 18 18 C 1.50701 * 109.47184 * 179.97438 * 17 16 6 19 19 C 1.38417 * 122.53906 * 269.73627 * 18 17 16 20 20 C 1.33401 * 114.92108 * 179.76236 * 19 18 17 21 21 S 1.75882 * 109.58677 * 0.47897 * 20 19 18 22 22 C 1.33392 * 122.53692 * 90.02927 * 18 17 16 23 23 H 1.09008 * 109.46592 * 290.75177 * 1 2 3 24 24 H 1.09000 * 109.47499 * 50.74942 * 1 2 3 25 25 H 1.08995 * 109.46696 * 170.75549 * 1 2 3 26 26 H 1.08997 * 109.46640 * 180.02562 * 3 2 1 27 27 H 1.08991 * 109.47020 * 300.00056 * 3 2 1 28 28 H 1.09001 * 109.47167 * 60.00485 * 3 2 1 29 29 H 1.09005 * 109.46625 * 299.99473 * 4 2 1 30 30 H 1.09001 * 109.47424 * 59.99503 * 4 2 1 31 31 H 1.09005 * 109.47103 * 179.97438 * 4 2 1 32 32 H 1.08997 * 109.47526 * 304.50929 * 5 2 1 33 33 H 1.09001 * 109.47583 * 184.50244 * 5 2 1 34 34 H 0.96997 * 119.99785 * 179.97438 * 11 10 8 35 35 H 1.09000 * 109.47041 * 300.00017 * 17 16 6 36 36 H 1.09007 * 109.46741 * 60.00061 * 17 16 6 37 37 H 1.08003 * 122.54041 * 359.97438 * 19 18 17 38 38 H 1.07998 * 125.20234 * 180.20956 * 20 19 18 39 39 H 1.07995 * 125.20194 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3851 0.0000 4 6 1.9587 -0.6924 -1.1995 5 6 1.9588 -0.6924 1.1994 6 6 1.5435 -2.1640 1.1440 7 1 1.8698 -2.5982 0.1990 8 6 2.1827 -2.9097 2.2869 9 1 2.8490 -3.7358 2.0872 10 6 1.9169 -2.5373 3.5876 11 7 1.1051 -1.5316 3.8308 12 14 2.7087 -3.4621 5.0043 13 1 4.0048 -2.8243 5.3489 14 1 1.8089 -3.4239 6.1849 15 1 2.9421 -4.8734 4.6052 16 8 0.1216 -2.2618 1.2474 17 6 -0.4345 -3.3889 0.5675 18 6 -1.9313 -3.3930 0.7425 19 6 -2.5561 -4.0404 1.7944 20 6 -3.8865 -3.9419 1.8044 21 16 -4.4183 -2.9986 0.4185 22 6 -2.7547 -2.7778 -0.1077 23 1 -0.3633 0.3642 0.9611 24 1 -0.3634 0.6502 -0.7958 25 1 -0.3632 -1.0143 -0.1651 26 1 3.0486 1.3851 -0.0005 27 1 1.5953 1.8989 -0.8899 28 1 1.5954 1.8989 0.8900 29 1 1.5953 -1.7201 -1.1994 30 1 1.5953 -0.1786 -2.0895 31 1 3.0487 -0.6920 -1.1997 32 1 1.5310 -0.2273 2.0876 33 1 3.0458 -0.6230 1.2407 34 1 0.9179 -1.2699 4.7458 35 1 -0.1925 -3.3288 -0.4937 36 1 -0.0178 -4.3062 0.9838 37 1 -2.0079 -4.5812 2.5516 38 1 -4.5375 -4.3787 2.5472 39 1 -2.4469 -2.2285 -0.9851 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223336708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:58:13 Heat of formation + Delta-G solvation = 96.625023 kcal Electronic energy + Delta-G solvation = -19969.197428 eV Core-core repulsion = 17122.636283 eV Total energy + Delta-G solvation = -2846.561146 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.127 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -43.21842 -39.38096 -37.64649 -34.39524 -31.73038 -30.62660 -30.29056 -30.16060 -27.70700 -27.25023 -24.85455 -23.56954 -22.54072 -19.61648 -18.97296 -18.62499 -18.49091 -18.08901 -17.87084 -16.88310 -16.14139 -15.88254 -15.50932 -14.95996 -14.75946 -14.40595 -14.11306 -14.05381 -13.90730 -13.84314 -13.70881 -13.62911 -13.54421 -13.20597 -12.86414 -12.62938 -12.30468 -12.11303 -12.03202 -11.50762 -11.27233 -11.01860 -10.08445 -9.74925 -9.60274 -9.19510 -7.64921 -5.85135 0.20358 0.38960 0.87579 1.19257 1.86989 2.14782 2.29431 2.32129 2.37594 2.39827 2.44412 3.07246 3.16802 3.22589 3.33231 3.46702 3.59594 3.70525 3.74895 3.77009 3.79719 3.90923 4.05629 4.20831 4.25277 4.35630 4.36917 4.55807 4.62947 4.71744 4.84298 5.05436 5.26541 5.36015 5.60503 5.74799 6.28593 6.35506 6.76491 7.31273 7.98254 9.37838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.271 5.271 3 C -0.041 4.041 4 C -0.046 4.046 5 C -0.003 4.003 6 C 0.199 3.801 7 H 0.031 0.969 8 C -0.567 4.567 9 H 0.072 0.928 10 C 0.093 3.907 11 N -0.859 5.859 12 Si 0.898 3.102 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.268 1.268 16 O -0.367 6.367 17 C 0.124 3.876 18 C -0.087 4.087 19 C -0.113 4.113 20 C -0.211 4.211 21 S 0.087 5.913 22 C -0.211 4.211 23 H 0.119 0.881 24 H 0.094 0.906 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.156 0.844 33 H 0.115 0.885 34 H 0.275 0.725 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.143 0.857 38 H 0.164 0.836 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.498 8.855 -13.257 15.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 N 0.071 4.929 3 C -0.183 4.183 4 C -0.188 4.188 5 C -0.121 4.121 6 C 0.143 3.857 7 H 0.049 0.951 8 C -0.604 4.604 9 H 0.090 0.910 10 C -0.117 4.117 11 N -0.493 5.493 12 Si 0.724 3.276 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.193 1.193 16 O -0.287 6.287 17 C 0.045 3.955 18 C -0.100 4.100 19 C -0.143 4.143 20 C -0.346 4.346 21 S 0.350 5.650 22 C -0.347 4.347 23 H 0.138 0.862 24 H 0.112 0.888 25 H 0.152 0.848 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.174 0.826 33 H 0.134 0.866 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.161 0.839 38 H 0.181 0.819 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.144 9.571 -13.543 16.623 hybrid contribution 1.824 -1.065 1.406 2.537 sum 0.680 8.506 -12.137 14.836 Atomic orbital electron populations 1.24306 0.76366 1.09722 1.07595 1.46390 1.15637 1.14271 1.16631 1.23989 1.04831 0.81449 1.07983 1.24039 1.04935 1.02509 0.87270 1.24953 1.02898 0.98115 0.86160 1.19942 0.80654 0.88278 0.96856 0.95101 1.21236 1.30870 1.18149 0.90183 0.91010 1.24979 0.92959 0.94308 0.99435 1.69646 1.31797 1.25809 1.22048 0.86447 0.79461 0.80709 0.80991 1.19908 1.20376 1.19251 1.88120 1.22088 1.43548 1.74935 1.20771 0.87954 0.92504 0.94309 1.18772 0.96004 0.99728 0.95527 1.20153 0.93481 1.01392 0.99273 1.25613 0.99003 1.06918 1.03115 1.84300 1.07554 1.51787 1.21349 1.25365 0.95703 1.08173 1.05414 0.86248 0.88783 0.84837 0.86957 0.87407 0.86598 0.86348 0.87418 0.86766 0.82632 0.86648 0.91489 0.94529 0.91802 0.83930 0.81876 0.82429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.32 7.17 60.07 0.43 0.75 16 2 N -0.27 2.50 0.05 -395.61 -0.02 2.48 16 3 C -0.04 0.48 8.00 60.07 0.48 0.96 16 4 C -0.05 0.50 7.54 60.06 0.45 0.95 16 5 C 0.00 0.01 3.53 -3.82 -0.01 0.00 16 6 C 0.20 0.22 1.85 -27.88 -0.05 0.17 16 7 H 0.03 -0.04 5.49 -51.93 -0.28 -0.33 16 8 C -0.57 -4.07 8.89 -34.44 -0.31 -4.38 16 9 H 0.07 0.61 7.81 -52.49 -0.41 0.20 16 10 C 0.09 0.85 5.24 -17.82 -0.09 0.75 16 11 N -0.86 -7.87 10.95 55.43 0.61 -7.27 16 12 Si 0.90 8.38 29.54 -169.99 -5.02 3.36 16 13 H -0.27 -2.64 7.11 56.52 0.40 -2.24 16 14 H -0.28 -2.97 7.11 56.52 0.40 -2.57 16 15 H -0.27 -2.72 7.11 56.52 0.40 -2.32 16 16 O -0.37 -0.73 6.44 -35.23 -0.23 -0.96 16 17 C 0.12 0.16 5.31 36.01 0.19 0.35 16 18 C -0.09 -0.17 5.43 -106.25 -0.58 -0.74 16 19 C -0.11 -0.37 9.98 -41.21 -0.41 -0.79 16 20 C -0.21 -0.48 11.23 29.04 0.33 -0.15 16 21 S 0.09 0.09 23.34 -107.50 -2.51 -2.42 16 22 C -0.21 -0.02 10.98 29.04 0.32 0.30 16 23 H 0.12 -0.71 7.94 -51.92 -0.41 -1.12 16 24 H 0.09 -1.05 8.01 -51.93 -0.42 -1.47 16 25 H 0.13 -0.82 5.04 -51.93 -0.26 -1.08 16 26 H 0.11 -1.39 8.12 -51.93 -0.42 -1.81 16 27 H 0.11 -1.48 8.07 -51.93 -0.42 -1.90 16 28 H 0.12 -1.27 8.14 -51.93 -0.42 -1.70 16 29 H 0.12 -1.11 5.86 -51.93 -0.30 -1.41 16 30 H 0.11 -1.43 8.14 -51.93 -0.42 -1.85 16 31 H 0.11 -1.33 8.14 -51.93 -0.42 -1.75 16 32 H 0.16 0.01 6.12 -51.93 -0.32 -0.31 16 33 H 0.12 -0.46 8.09 -51.93 -0.42 -0.88 16 34 H 0.27 2.74 8.31 -40.82 -0.34 2.40 16 35 H 0.04 -0.07 8.06 -51.93 -0.42 -0.49 16 36 H 0.06 0.23 8.13 -51.93 -0.42 -0.20 16 37 H 0.14 0.54 8.06 -52.48 -0.42 0.11 16 38 H 0.16 0.12 8.06 -52.49 -0.42 -0.31 16 39 H 0.16 -0.48 8.06 -52.49 -0.42 -0.91 16 LS Contribution 320.42 15.07 4.83 4.83 Total: 0.00 -15.95 320.42 -7.77 -23.73 By element: Atomic # 1 Polarization: -15.73 SS G_CDS: -6.18 Total: -21.91 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 0.75 Total: -1.84 kcal Atomic # 7 Polarization: -5.37 SS G_CDS: 0.59 Total: -4.78 kcal Atomic # 8 Polarization: -0.73 SS G_CDS: -0.23 Total: -0.96 kcal Atomic # 14 Polarization: 8.38 SS G_CDS: -5.02 Total: 3.36 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.51 Total: -2.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -15.95 -7.77 -23.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223336708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.350 kcal (2) G-P(sol) polarization free energy of solvation -15.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds