Wall clock time and date at job start Mon Mar 30 2020 19:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48502 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99520 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00347 * 3 2 1 7 7 C 1.37882 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14335 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.42076 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46499 * 109.46602 * 294.81113 * 10 9 7 12 12 C 1.34782 * 119.99602 * 184.79227 * 11 10 9 13 13 O 1.21273 * 120.00176 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99710 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47261 * 180.02562 * 14 12 11 16 16 N 1.46498 * 109.47372 * 179.97438 * 15 14 12 17 17 C 1.34782 * 119.99822 * 179.97438 * 16 15 14 18 18 O 1.21281 * 119.99913 * 0.02562 * 17 16 15 19 19 C 1.50694 * 119.99642 * 179.97438 * 17 16 15 20 20 O 1.42903 * 109.47003 * 180.02562 * 19 17 16 21 21 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 22 22 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 23 23 H 0.97004 * 120.00506 * 5.00201 * 1 2 3 24 24 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 25 25 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 26 26 H 0.97004 * 120.00630 * 4.79957 * 11 10 9 27 27 H 1.09003 * 109.47069 * 300.00128 * 14 12 11 28 28 H 1.08998 * 109.47269 * 59.99690 * 14 12 11 29 29 H 1.09003 * 109.46759 * 299.99798 * 15 14 12 30 30 H 1.09002 * 109.47303 * 59.99758 * 15 14 12 31 31 H 0.96996 * 120.00082 * 359.97438 * 16 15 14 32 32 H 1.08993 * 109.47624 * 300.00398 * 19 17 16 33 33 H 1.08996 * 109.47194 * 60.00770 * 19 17 16 34 34 H 0.96697 * 114.00427 * 180.02562 * 20 19 17 35 35 H 1.08997 * 117.49622 * 359.97438 * 21 9 7 36 36 H 1.09000 * 117.49928 * 145.02150 * 21 9 7 37 37 H 1.08996 * 117.50254 * 214.97905 * 22 9 7 38 38 H 1.09005 * 117.49689 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2463 2.2510 12 6 2.1053 -3.7589 3.4964 13 8 1.0322 -3.9774 4.0174 14 6 3.3800 -4.0604 4.2416 15 6 3.0420 -4.6298 5.6209 16 7 4.2811 -4.9235 6.3451 17 6 4.2284 -5.4361 7.5905 18 8 3.1552 -5.6547 8.1114 19 6 5.5031 -5.7387 8.3351 20 8 5.1873 -6.2705 9.6234 21 6 1.5731 -3.5804 -0.9271 22 6 0.2453 -2.8219 -0.9976 23 1 -0.4851 0.8368 -0.0732 24 1 0.3750 -2.1615 2.0429 25 1 0.3014 -3.8500 1.4844 26 1 3.0164 -3.0718 1.8343 27 1 3.9647 -4.7898 3.6811 28 1 3.9582 -3.1438 4.3583 29 1 2.4571 -3.9006 6.1816 30 1 2.4640 -5.5465 5.5038 31 1 5.1394 -4.7490 5.9283 32 1 6.0870 -6.4685 7.7744 33 1 6.0820 -4.8226 8.4519 34 1 5.9619 -6.4884 10.1597 35 1 2.3246 -3.3505 -1.6824 36 1 1.5429 -4.6177 -0.5938 37 1 -0.6578 -3.3606 -0.7107 38 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639856467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:47:00 Heat of formation + Delta-G solvation = -106.761091 kcal Electronic energy + Delta-G solvation = -20060.912398 eV Core-core repulsion = 16711.008726 eV Total energy + Delta-G solvation = -3349.903672 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95042 -39.13457 -36.88954 -36.66967 -35.15725 -33.37104 -32.01616 -31.30429 -28.21236 -26.38725 -25.28329 -23.14083 -21.20215 -20.92552 -19.79025 -19.26985 -18.18506 -17.04075 -16.83520 -16.31135 -16.17577 -15.50800 -15.39516 -14.91791 -14.69886 -14.18827 -14.07520 -13.73240 -13.23179 -12.89228 -12.67926 -12.60744 -11.94632 -11.92502 -11.62509 -11.39192 -11.04928 -10.99268 -10.62117 -10.56623 -10.28312 -10.00364 -9.67679 -9.37263 -9.24913 -9.08732 -8.54959 -8.33148 -8.15201 -6.12466 -4.22881 2.42950 2.64920 3.08585 3.20769 3.30096 3.31033 3.80493 4.19541 4.30401 4.47368 4.69419 4.77602 4.80656 5.04521 5.13000 5.16575 5.32483 5.52170 5.84596 5.95977 5.98915 6.21748 6.29253 6.43004 6.51421 6.65854 6.81948 7.07924 7.08313 7.20080 7.30384 7.34713 7.48766 7.75928 8.03996 8.19150 8.28422 8.76024 8.79971 9.44706 10.94680 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026173 B = 0.003296 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.562549 B = 8493.282587 C = 9048.103628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.162 3.838 11 N -0.702 5.702 12 C 0.506 3.494 13 O -0.554 6.554 14 C -0.153 4.153 15 C 0.136 3.864 16 N -0.731 5.731 17 C 0.506 3.494 18 O -0.516 6.516 19 C 0.061 3.939 20 O -0.548 6.548 21 C -0.211 4.211 22 C -0.142 4.142 23 H 0.262 0.738 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.401 0.599 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.400 0.600 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.385 0.615 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.551 -8.631 9.162 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.023 3.977 10 C 0.039 3.961 11 N -0.350 5.350 12 C 0.291 3.709 13 O -0.433 6.433 14 C -0.194 4.194 15 C 0.013 3.987 16 N -0.386 5.386 17 C 0.291 3.709 18 O -0.390 6.390 19 C -0.021 4.021 20 O -0.353 6.353 21 C -0.248 4.248 22 C -0.181 4.181 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.236 0.764 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.234 0.766 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.233 0.767 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.175 -8.723 9.760 17.877 hybrid contribution 1.869 1.165 -0.462 2.250 sum 14.044 -7.558 9.298 18.461 Atomic orbital electron populations 1.69994 1.05906 1.26850 1.48187 1.25004 0.94826 0.99026 0.94291 0.86569 0.80092 0.83816 0.77694 1.19721 1.21010 1.20927 1.20382 0.92638 0.88562 1.52317 0.92141 1.19050 0.99445 0.93324 0.85915 1.21020 0.84072 0.98020 0.92975 1.45984 1.11413 1.62634 1.15011 1.20170 0.90321 0.78228 0.82228 1.90708 1.30962 1.53809 1.67799 1.21794 0.98007 1.03434 0.96129 1.21065 0.85271 1.01905 0.90486 1.45900 1.10221 1.66290 1.16144 1.20338 0.91127 0.77821 0.81600 1.90769 1.30776 1.50409 1.67058 1.21837 0.94603 0.99469 0.86151 1.86605 1.36353 1.85669 1.26680 1.23020 1.00750 0.95556 1.05492 1.22472 0.90807 1.01316 1.03462 0.92851 0.91387 0.94095 0.76447 0.88527 0.88323 0.90343 0.90426 0.76643 0.90502 0.90473 0.76736 0.90391 0.91733 0.91799 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.86 12.65 55.43 0.70 -23.16 16 2 C 0.07 1.89 5.43 -17.82 -0.10 1.79 16 3 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.50 -12.49 8.59 -34.44 -0.30 -12.79 16 8 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 9 C 0.02 0.53 1.47 -155.66 -0.23 0.30 16 10 C 0.16 3.56 5.50 -4.04 -0.02 3.53 16 11 N -0.70 -12.61 5.48 -60.29 -0.33 -12.94 16 12 C 0.51 8.63 7.83 -10.98 -0.09 8.54 16 13 O -0.55 -11.84 15.98 5.56 0.09 -11.75 16 14 C -0.15 -1.70 5.81 -27.88 -0.16 -1.87 16 15 C 0.14 1.72 4.96 -4.04 -0.02 1.70 16 16 N -0.73 -6.87 5.56 -60.30 -0.33 -7.20 16 17 C 0.51 6.02 7.91 -10.99 -0.09 5.94 16 18 O -0.52 -9.18 16.50 -14.35 -0.24 -9.42 16 19 C 0.06 0.43 7.53 36.00 0.27 0.70 16 20 O -0.55 -5.04 13.19 -55.14 -0.73 -5.77 16 21 C -0.21 -4.26 9.96 -26.69 -0.27 -4.53 16 22 C -0.14 -3.21 9.14 -26.69 -0.24 -3.45 16 23 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 24 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 25 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 26 H 0.40 6.40 8.33 -40.82 -0.34 6.06 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 31 H 0.40 2.11 8.47 -40.82 -0.35 1.76 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.39 1.18 9.12 45.56 0.42 1.60 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -35.56 333.98 -6.95 -42.51 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.88 Total: 7.79 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.24 Total: -0.13 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.04 Total: -43.30 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.88 Total: -26.94 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.56 -6.95 -42.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639856467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.251 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds