Wall clock time and date at job start Mon Mar 30 2020 19:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48502 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99520 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00347 * 3 2 1 7 7 C 1.37882 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14335 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.42076 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46499 * 109.46602 * 294.81113 * 10 9 7 12 12 C 1.34782 * 119.99602 * 184.79227 * 11 10 9 13 13 O 1.21273 * 120.00176 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99710 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47261 * 180.02562 * 14 12 11 16 16 N 1.46498 * 109.47372 * 179.97438 * 15 14 12 17 17 C 1.34782 * 119.99822 * 179.97438 * 16 15 14 18 18 O 1.21281 * 119.99913 * 0.02562 * 17 16 15 19 19 C 1.50694 * 119.99642 * 179.97438 * 17 16 15 20 20 O 1.42903 * 109.47003 * 180.02562 * 19 17 16 21 21 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 22 22 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 23 23 H 0.97004 * 120.00506 * 5.00201 * 1 2 3 24 24 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 25 25 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 26 26 H 0.97004 * 120.00630 * 4.79957 * 11 10 9 27 27 H 1.09003 * 109.47069 * 300.00128 * 14 12 11 28 28 H 1.08998 * 109.47269 * 59.99690 * 14 12 11 29 29 H 1.09003 * 109.46759 * 299.99798 * 15 14 12 30 30 H 1.09002 * 109.47303 * 59.99758 * 15 14 12 31 31 H 0.96996 * 120.00082 * 359.97438 * 16 15 14 32 32 H 1.08993 * 109.47624 * 300.00398 * 19 17 16 33 33 H 1.08996 * 109.47194 * 60.00770 * 19 17 16 34 34 H 0.96697 * 114.00427 * 180.02562 * 20 19 17 35 35 H 1.08997 * 117.49622 * 359.97438 * 21 9 7 36 36 H 1.09000 * 117.49928 * 145.02150 * 21 9 7 37 37 H 1.08996 * 117.50254 * 214.97905 * 22 9 7 38 38 H 1.09005 * 117.49689 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2463 2.2510 12 6 2.1053 -3.7589 3.4964 13 8 1.0322 -3.9774 4.0174 14 6 3.3800 -4.0604 4.2416 15 6 3.0420 -4.6298 5.6209 16 7 4.2811 -4.9235 6.3451 17 6 4.2284 -5.4361 7.5905 18 8 3.1552 -5.6547 8.1114 19 6 5.5031 -5.7387 8.3351 20 8 5.1873 -6.2705 9.6234 21 6 1.5731 -3.5804 -0.9271 22 6 0.2453 -2.8219 -0.9976 23 1 -0.4851 0.8368 -0.0732 24 1 0.3750 -2.1615 2.0429 25 1 0.3014 -3.8500 1.4844 26 1 3.0164 -3.0718 1.8343 27 1 3.9647 -4.7898 3.6811 28 1 3.9582 -3.1438 4.3583 29 1 2.4571 -3.9006 6.1816 30 1 2.4640 -5.5465 5.5038 31 1 5.1394 -4.7490 5.9283 32 1 6.0870 -6.4685 7.7744 33 1 6.0820 -4.8226 8.4519 34 1 5.9619 -6.4884 10.1597 35 1 2.3246 -3.3505 -1.6824 36 1 1.5429 -4.6177 -0.5938 37 1 -0.6578 -3.3606 -0.7107 38 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639856467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:46:59 Heat of formation + Delta-G solvation = -136.901802 kcal Electronic energy + Delta-G solvation = -20062.219397 eV Core-core repulsion = 16711.008726 eV Total energy + Delta-G solvation = -3351.210671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99619 -40.46016 -38.50788 -37.40550 -36.20490 -34.96073 -33.94968 -32.32783 -29.09455 -27.96345 -27.03916 -24.25924 -22.92054 -21.85832 -21.36423 -20.86597 -18.88066 -18.30957 -17.91813 -17.63809 -17.20397 -16.70422 -16.50219 -16.47387 -16.34892 -15.59203 -15.16887 -14.94937 -14.61240 -14.22371 -14.14423 -13.62126 -13.44806 -13.34326 -12.91878 -12.91263 -12.86054 -12.44009 -12.30268 -12.01749 -11.41546 -11.11521 -11.05876 -10.93488 -10.83475 -10.44212 -10.20300 -10.03551 -9.83278 -8.08656 -6.23357 1.42671 1.46581 1.55499 1.56251 1.72771 1.81944 2.42570 2.54396 3.19869 3.50357 3.61146 3.76538 3.88094 4.07920 4.08929 4.26696 4.33175 4.43666 4.54490 4.56589 4.66332 4.73916 4.86188 4.94502 5.00999 5.05025 5.29530 5.33189 5.56736 5.61037 5.71163 5.79441 6.37122 6.50043 6.77613 6.86386 6.93218 7.25098 7.40758 7.47219 8.98528 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026173 B = 0.003296 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.562549 B = 8493.282587 C = 9048.103628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.951 3.049 4 H -0.255 1.255 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.502 4.502 8 H 0.070 0.930 9 C 0.004 3.996 10 C 0.177 3.823 11 N -0.696 5.696 12 C 0.501 3.499 13 O -0.604 6.604 14 C -0.131 4.131 15 C 0.141 3.859 16 N -0.708 5.708 17 C 0.494 3.506 18 O -0.589 6.589 19 C 0.067 3.933 20 O -0.587 6.587 21 C -0.174 4.174 22 C -0.159 4.159 23 H 0.258 0.742 24 H 0.023 0.977 25 H 0.035 0.965 26 H 0.415 0.585 27 H 0.140 0.860 28 H 0.132 0.868 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.425 0.575 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.409 0.591 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.642 -9.162 8.968 22.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.180 4.180 3 Si 0.778 3.222 4 H -0.179 1.179 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.539 4.539 8 H 0.088 0.912 9 C 0.003 3.997 10 C 0.053 3.947 11 N -0.346 5.346 12 C 0.288 3.712 13 O -0.486 6.486 14 C -0.171 4.171 15 C 0.016 3.984 16 N -0.363 5.363 17 C 0.282 3.718 18 O -0.468 6.468 19 C -0.013 4.013 20 O -0.396 6.396 21 C -0.211 4.211 22 C -0.198 4.198 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.053 0.947 26 H 0.251 0.749 27 H 0.158 0.842 28 H 0.150 0.850 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.261 0.739 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.395 -9.255 9.536 21.104 hybrid contribution 0.596 1.290 -0.397 1.475 sum 16.991 -7.966 9.138 20.872 Atomic orbital electron populations 1.70133 1.07440 1.27216 1.50057 1.25760 0.95452 1.02298 0.94475 0.85609 0.79770 0.79947 0.76912 1.17880 1.21339 1.21745 1.20738 0.93164 0.89316 1.50732 0.91227 1.19081 1.00057 0.94067 0.86471 1.20543 0.85469 0.96136 0.92584 1.45833 1.10565 1.62770 1.15386 1.21206 0.91798 0.76555 0.81640 1.90697 1.33622 1.55594 1.68715 1.21715 0.95035 1.06024 0.94323 1.20745 0.86352 0.99856 0.91412 1.45631 1.10241 1.65017 1.15449 1.21478 0.92102 0.76371 0.81878 1.90740 1.33766 1.53576 1.68761 1.21987 0.91759 1.02216 0.85327 1.86540 1.38965 1.86102 1.28015 1.23004 0.98654 0.95888 1.03544 1.22394 0.92222 1.02001 1.03146 0.93329 0.95853 0.94670 0.74851 0.84215 0.84995 0.93669 0.93097 0.73602 0.86598 0.86786 0.73919 0.89436 0.89338 0.91620 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.00 12.65 21.45 0.27 -50.73 16 2 C 0.02 1.06 5.43 84.66 0.46 1.52 16 3 Si 0.95 40.91 29.54 68.60 2.03 42.93 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.50 -24.52 8.59 25.60 0.22 -24.30 16 8 H 0.07 3.21 7.82 -2.91 -0.02 3.19 16 9 C 0.00 0.18 1.47 -52.93 -0.08 0.10 16 10 C 0.18 7.86 5.50 86.38 0.48 8.34 16 11 N -0.70 -24.06 5.48 -463.06 -2.54 -26.60 16 12 C 0.50 16.58 7.83 87.66 0.69 17.27 16 13 O -0.60 -26.56 15.98 -3.01 -0.05 -26.61 16 14 C -0.13 -2.50 5.81 29.85 0.17 -2.33 16 15 C 0.14 3.46 4.96 86.38 0.43 3.89 16 16 N -0.71 -11.51 5.56 -463.06 -2.57 -14.08 16 17 C 0.49 11.08 7.91 87.65 0.69 11.77 16 18 O -0.59 -21.60 16.50 16.00 0.26 -21.34 16 19 C 0.07 0.72 7.53 71.23 0.54 1.25 16 20 O -0.59 -9.70 13.19 -129.94 -1.71 -11.41 16 21 C -0.17 -6.63 9.96 30.62 0.30 -6.33 16 22 C -0.16 -7.21 9.14 30.62 0.28 -6.93 16 23 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 24 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.03 1.57 8.09 -2.39 -0.02 1.55 16 26 H 0.41 12.02 8.33 -92.71 -0.77 11.25 16 27 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.41 8.10 -2.39 -0.02 1.39 16 30 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 31 H 0.43 2.48 8.47 -92.71 -0.79 1.70 16 32 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.41 1.53 9.12 -74.06 -0.68 0.86 16 35 H 0.09 3.19 8.14 -2.39 -0.02 3.18 16 36 H 0.09 2.97 8.14 -2.39 -0.02 2.96 16 37 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.06 3.16 8.14 -2.38 -0.02 3.14 16 Total: -1.00 -83.47 333.98 -1.27 -84.74 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -1.14 Total: 18.83 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 4.18 Total: 4.26 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -4.84 Total: -91.40 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: -1.50 Total: -59.36 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -83.47 -1.27 -84.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639856467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.160 kcal (2) G-P(sol) polarization free energy of solvation -83.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds