Wall clock time and date at job start Mon Mar 30 2020 19:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36048 * 120.03344 * 2 1 4 4 C 1.40522 * 120.06971 * 180.02562 * 3 2 1 5 5 C 1.46450 * 119.93373 * 179.97438 * 4 3 2 6 6 C 1.35358 * 119.43978 * 64.99789 * 5 4 3 7 7 C 1.40573 * 121.55623 * 179.97438 * 6 5 4 8 8 O 1.21469 * 119.74592 * 180.47731 * 7 6 5 9 9 C 1.50695 * 120.50749 * 0.50437 * 7 6 5 10 10 C 1.53190 * 109.09308 * 28.82930 * 9 7 6 11 11 H 1.09004 * 109.56465 * 62.87071 * 10 9 7 12 12 C 1.52991 * 109.56927 * 183.22480 * 10 9 7 13 13 C 1.50541 * 119.44101 * 245.25668 * 5 4 3 14 14 C 1.40573 * 120.13501 * 0.22889 * 4 3 2 15 15 C 1.36011 * 120.06734 * 359.48404 * 14 4 3 16 16 C 1.41088 * 120.03725 * 180.02562 * 2 1 3 17 17 C 1.40724 * 120.06730 * 359.96006 * 16 2 1 18 18 H 1.08003 * 119.99842 * 329.10776 * 17 16 2 19 19 C 1.40377 * 120.00348 * 149.10607 * 17 16 2 20 20 N 1.30570 * 120.00117 * 162.55226 * 19 17 16 21 21 Si 1.86797 * 119.99941 * 342.56102 * 19 17 16 22 22 H 1.48500 * 109.47561 * 95.36460 * 21 19 17 23 23 H 1.48497 * 109.46985 * 215.36712 * 21 19 17 24 24 H 1.48510 * 109.46893 * 335.36267 * 21 19 17 25 25 H 1.09003 * 109.46982 * 90.00879 * 1 2 3 26 26 H 1.09005 * 109.47188 * 210.00442 * 1 2 3 27 27 H 1.08996 * 109.47578 * 330.00070 * 1 2 3 28 28 H 1.08004 * 119.96103 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.22379 * 0.23933 * 6 5 4 30 30 H 1.08999 * 109.53783 * 148.71352 * 9 7 6 31 31 H 1.08997 * 109.53473 * 268.94530 * 9 7 6 32 32 H 1.09005 * 109.47066 * 60.00109 * 12 10 9 33 33 H 1.09002 * 109.47168 * 179.97438 * 12 10 9 34 34 H 1.09006 * 109.47705 * 300.00145 * 12 10 9 35 35 H 1.08999 * 109.56615 * 30.29173 * 13 5 4 36 36 H 1.09005 * 109.26714 * 270.36538 * 13 5 4 37 37 H 1.08001 * 119.96366 * 179.74378 * 14 4 3 38 38 H 1.07995 * 120.03769 * 180.25366 * 15 14 4 39 39 H 0.97002 * 119.99985 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1778 0.0000 4 6 3.5931 1.1787 -0.0005 5 6 4.3231 2.4483 -0.0011 6 6 4.2232 3.2736 1.0671 7 6 4.9048 4.5022 1.1138 8 8 4.7986 5.2135 2.0927 9 6 5.7658 4.9437 -0.0414 10 6 5.2147 4.3397 -1.3368 11 1 4.2097 4.7208 -1.5185 12 6 6.1269 4.7152 -2.5061 13 6 5.1672 2.8160 -1.1922 14 6 4.2996 -0.0366 -0.0059 15 6 3.6245 -1.2173 -0.0001 16 6 2.2132 -1.2214 -0.0005 17 6 1.5118 -2.4414 -0.0002 18 1 0.5471 -2.5095 0.4806 19 6 2.0659 -3.5698 -0.6249 20 7 1.6080 -4.7606 -0.3471 21 14 3.4586 -3.3678 -1.8533 22 1 4.7593 -3.5601 -1.1631 23 1 3.3169 -4.3778 -2.9326 24 1 3.4066 -2.0049 -2.4408 25 1 -0.3633 -0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 1.6478 2.1131 0.0004 29 1 3.6087 2.9795 1.9050 30 1 5.7518 6.0314 -0.1117 31 1 6.7886 4.6007 0.1143 32 1 7.1295 4.3282 -2.3236 33 1 5.7336 4.2843 -3.4268 34 1 6.1681 5.8004 -2.6010 35 1 4.7369 2.3791 -2.0933 36 1 6.1775 2.4325 -1.0492 37 1 5.3796 -0.0327 -0.0105 38 1 4.1678 -2.1507 -0.0001 39 1 1.9912 -5.5404 -0.7785 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242746292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:47:45 Heat of formation + Delta-G solvation = -31.392776 kcal Electronic energy + Delta-G solvation = -19968.877526 eV Core-core repulsion = 17033.091332 eV Total energy + Delta-G solvation = -2935.786193 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.88932 -38.27815 -36.71991 -34.16747 -32.97281 -31.56416 -30.16908 -28.76425 -26.88144 -26.38513 -24.97176 -22.18951 -21.31873 -20.83851 -19.38969 -17.75081 -17.42857 -16.09344 -15.60272 -15.23934 -14.98324 -14.42380 -14.21335 -13.99226 -13.81261 -13.32083 -12.98100 -12.64990 -12.59955 -12.43798 -12.27268 -12.05968 -11.94823 -11.51183 -11.47182 -11.31286 -10.98374 -10.85433 -10.80415 -10.57833 -10.28814 -9.98924 -9.73172 -9.34449 -9.19810 -8.76113 -7.79977 -7.54204 -7.16183 -4.63309 1.13653 2.35985 2.61286 2.97880 3.09463 3.17756 3.30358 3.82448 4.26169 4.46676 4.61448 4.77877 4.91629 5.20308 5.30114 5.41939 5.44081 5.53128 5.54513 5.66238 5.71887 5.87224 5.88375 5.96795 5.99667 6.16804 6.19289 6.32217 6.48939 6.52351 6.53034 6.61832 6.76824 6.78885 6.88042 6.99501 7.36710 7.51686 7.54655 7.72845 7.90669 7.96393 8.15931 8.49018 8.59571 9.83951 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024953 B = 0.004953 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.850841 B = 5651.339769 C = 6209.599406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.185 4.185 3 C -0.048 4.048 4 C -0.237 4.237 5 C 0.088 3.912 6 C -0.289 4.289 7 C 0.393 3.607 8 O -0.491 6.491 9 C -0.164 4.164 10 C -0.086 4.086 11 H 0.078 0.922 12 C -0.146 4.146 13 C -0.101 4.101 14 C -0.047 4.047 15 C -0.242 4.242 16 C 0.104 3.896 17 C -0.431 4.431 18 H 0.098 0.902 19 C 0.083 3.917 20 N -0.793 5.793 21 Si 0.913 3.087 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.242 1.242 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 10.089 -5.412 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.186 4.186 3 C -0.066 4.066 4 C -0.238 4.238 5 C 0.087 3.913 6 C -0.308 4.308 7 C 0.277 3.723 8 O -0.372 6.372 9 C -0.202 4.202 10 C -0.104 4.104 11 H 0.096 0.904 12 C -0.203 4.203 13 C -0.137 4.137 14 C -0.066 4.066 15 C -0.261 4.261 16 C 0.100 3.900 17 C -0.458 4.458 18 H 0.116 0.884 19 C -0.138 4.138 20 N -0.415 5.415 21 Si 0.739 3.261 22 H -0.194 1.194 23 H -0.216 1.216 24 H -0.165 1.165 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.145 0.855 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.335 10.139 -4.927 12.931 hybrid contribution 0.604 -0.356 -0.489 0.855 sum 6.940 9.783 -5.416 13.161 Atomic orbital electron populations 1.20449 0.92797 1.00744 1.00464 1.19406 0.94843 0.92562 1.11752 1.20298 0.92048 0.96404 0.97839 1.18095 0.92852 0.90677 1.22153 1.21290 0.87299 0.91416 0.91294 1.22128 1.09268 0.97979 1.01401 1.20875 0.78953 0.85810 0.86661 1.90547 1.57901 1.55005 1.33780 1.22199 1.00835 1.02348 0.94795 1.21199 1.00280 0.94782 0.94169 0.90394 1.21818 0.99460 1.01370 0.97672 1.21006 1.00117 0.95158 0.97449 1.20327 0.97197 0.91815 0.97216 1.20655 0.94569 0.96416 1.14429 1.17664 0.91255 0.92755 0.88304 1.19648 1.05680 0.91436 1.29029 0.88443 1.26327 0.96802 0.94119 0.96588 1.69571 1.37856 0.99495 1.34610 0.86266 0.80113 0.80068 0.79640 1.19446 1.21640 1.16468 0.93216 0.91851 0.94065 0.88581 0.85526 0.89389 0.88666 0.92430 0.92149 0.92460 0.89425 0.89542 0.88772 0.88025 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.61 36.00 0.35 -1.34 16 2 C -0.18 -4.01 5.90 -104.33 -0.62 -4.63 16 3 C -0.05 -0.95 9.27 -39.51 -0.37 -1.32 16 4 C -0.24 -4.55 5.26 -104.85 -0.55 -5.10 16 5 C 0.09 1.41 5.27 -102.42 -0.54 0.87 16 6 C -0.29 -4.79 9.27 -39.73 -0.37 -5.15 16 7 C 0.39 6.19 6.81 -33.43 -0.23 5.96 16 8 O -0.49 -9.34 17.82 5.39 0.10 -9.24 16 9 C -0.16 -1.91 5.37 -27.79 -0.15 -2.06 16 10 C -0.09 -0.92 2.78 -90.46 -0.25 -1.17 16 11 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 12 C -0.15 -1.22 9.21 37.15 0.34 -0.88 16 13 C -0.10 -1.26 5.13 -27.90 -0.14 -1.40 16 14 C -0.05 -0.95 9.69 -39.50 -0.38 -1.34 16 15 C -0.24 -5.46 7.08 -39.28 -0.28 -5.74 16 16 C 0.10 2.46 5.09 -106.78 -0.54 1.91 16 17 C -0.43 -10.82 8.89 -37.84 -0.34 -11.16 16 18 H 0.10 2.54 6.53 -52.48 -0.34 2.20 16 19 C 0.08 2.03 5.41 -17.28 -0.09 1.94 16 20 N -0.79 -19.78 13.91 55.57 0.77 -19.01 16 21 Si 0.91 19.46 24.52 -169.99 -4.17 15.30 16 22 H -0.27 -5.57 6.72 56.52 0.38 -5.19 16 23 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.24 -5.26 6.86 56.52 0.39 -4.88 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 1.25 6.30 -51.93 -0.33 0.93 16 27 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 28 H 0.10 1.75 8.06 -52.48 -0.42 1.32 16 29 H 0.13 2.29 8.04 -52.49 -0.42 1.87 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.10 2.29 4.81 -52.49 -0.25 2.04 16 39 H 0.29 6.51 8.29 -40.82 -0.34 6.17 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -26.76 318.37 -8.24 -35.00 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.58 Total: 3.76 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -4.16 Total: -30.60 kcal Atomic # 7 Polarization: -19.78 SS G_CDS: 0.77 Total: -19.01 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.10 Total: -9.24 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.17 Total: 15.30 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.76 -8.24 -35.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242746292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.604 kcal (2) G-P(sol) polarization free energy of solvation -26.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds