Wall clock time and date at job start Mon Mar 30 2020 19:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36048 * 120.03344 * 2 1 4 4 C 1.40522 * 120.06971 * 180.02562 * 3 2 1 5 5 C 1.46450 * 119.93373 * 179.97438 * 4 3 2 6 6 C 1.35358 * 119.43978 * 64.99789 * 5 4 3 7 7 C 1.40573 * 121.55623 * 179.97438 * 6 5 4 8 8 O 1.21469 * 119.74592 * 180.47731 * 7 6 5 9 9 C 1.50695 * 120.50749 * 0.50437 * 7 6 5 10 10 C 1.53190 * 109.09308 * 28.82930 * 9 7 6 11 11 H 1.09004 * 109.56465 * 62.87071 * 10 9 7 12 12 C 1.52991 * 109.56927 * 183.22480 * 10 9 7 13 13 C 1.50541 * 119.44101 * 245.25668 * 5 4 3 14 14 C 1.40573 * 120.13501 * 0.22889 * 4 3 2 15 15 C 1.36011 * 120.06734 * 359.48404 * 14 4 3 16 16 C 1.41088 * 120.03725 * 180.02562 * 2 1 3 17 17 C 1.40724 * 120.06730 * 359.96006 * 16 2 1 18 18 H 1.08003 * 119.99842 * 329.10776 * 17 16 2 19 19 C 1.40377 * 120.00348 * 149.10607 * 17 16 2 20 20 N 1.30570 * 120.00117 * 162.55226 * 19 17 16 21 21 Si 1.86797 * 119.99941 * 342.56102 * 19 17 16 22 22 H 1.48500 * 109.47561 * 95.36460 * 21 19 17 23 23 H 1.48497 * 109.46985 * 215.36712 * 21 19 17 24 24 H 1.48510 * 109.46893 * 335.36267 * 21 19 17 25 25 H 1.09003 * 109.46982 * 90.00879 * 1 2 3 26 26 H 1.09005 * 109.47188 * 210.00442 * 1 2 3 27 27 H 1.08996 * 109.47578 * 330.00070 * 1 2 3 28 28 H 1.08004 * 119.96103 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.22379 * 0.23933 * 6 5 4 30 30 H 1.08999 * 109.53783 * 148.71352 * 9 7 6 31 31 H 1.08997 * 109.53473 * 268.94530 * 9 7 6 32 32 H 1.09005 * 109.47066 * 60.00109 * 12 10 9 33 33 H 1.09002 * 109.47168 * 179.97438 * 12 10 9 34 34 H 1.09006 * 109.47705 * 300.00145 * 12 10 9 35 35 H 1.08999 * 109.56615 * 30.29173 * 13 5 4 36 36 H 1.09005 * 109.26714 * 270.36538 * 13 5 4 37 37 H 1.08001 * 119.96366 * 179.74378 * 14 4 3 38 38 H 1.07995 * 120.03769 * 180.25366 * 15 14 4 39 39 H 0.97002 * 119.99985 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1778 0.0000 4 6 3.5931 1.1787 -0.0005 5 6 4.3231 2.4483 -0.0011 6 6 4.2232 3.2736 1.0671 7 6 4.9048 4.5022 1.1138 8 8 4.7986 5.2135 2.0927 9 6 5.7658 4.9437 -0.0414 10 6 5.2147 4.3397 -1.3368 11 1 4.2097 4.7208 -1.5185 12 6 6.1269 4.7152 -2.5061 13 6 5.1672 2.8160 -1.1922 14 6 4.2996 -0.0366 -0.0059 15 6 3.6245 -1.2173 -0.0001 16 6 2.2132 -1.2214 -0.0005 17 6 1.5118 -2.4414 -0.0002 18 1 0.5471 -2.5095 0.4806 19 6 2.0659 -3.5698 -0.6249 20 7 1.6080 -4.7606 -0.3471 21 14 3.4586 -3.3678 -1.8533 22 1 4.7593 -3.5601 -1.1631 23 1 3.3169 -4.3778 -2.9326 24 1 3.4066 -2.0049 -2.4408 25 1 -0.3633 -0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 1.6478 2.1131 0.0004 29 1 3.6087 2.9795 1.9050 30 1 5.7518 6.0314 -0.1117 31 1 6.7886 4.6007 0.1143 32 1 7.1295 4.3282 -2.3236 33 1 5.7336 4.2843 -3.4268 34 1 6.1681 5.8004 -2.6010 35 1 4.7369 2.3791 -2.0933 36 1 6.1775 2.4325 -1.0492 37 1 5.3796 -0.0327 -0.0105 38 1 4.1678 -2.1507 -0.0001 39 1 1.9912 -5.5404 -0.7785 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242746292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:47:45 Heat of formation + Delta-G solvation = -43.859102 kcal Electronic energy + Delta-G solvation = -19969.418106 eV Core-core repulsion = 17033.091332 eV Total energy + Delta-G solvation = -2936.326774 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13136 -39.90348 -37.93474 -35.76401 -34.40971 -33.15924 -31.69589 -29.92799 -28.18003 -27.59815 -26.55528 -23.75253 -22.77663 -21.87779 -20.91492 -19.39275 -18.69766 -17.59600 -17.07432 -16.47329 -16.13611 -16.06164 -15.59210 -15.44067 -15.22872 -14.79213 -14.32274 -14.15776 -13.97231 -13.56224 -13.53651 -13.14802 -13.13424 -12.97040 -12.85179 -12.73395 -12.64586 -12.17522 -11.91916 -11.83773 -11.65178 -11.52288 -11.39645 -11.02188 -10.50333 -10.13028 -9.46898 -9.24167 -8.95042 -6.48073 -0.18191 0.70244 0.90151 1.26436 1.40379 1.48627 2.02996 2.10508 2.53228 3.38285 3.39707 3.65596 3.85171 3.93107 4.11938 4.22451 4.30310 4.44336 4.50429 4.56408 4.68031 4.71088 4.77457 4.83438 4.91192 4.93118 4.97186 5.03911 5.14605 5.17817 5.23308 5.27455 5.29788 5.33939 5.49357 5.55725 5.71371 5.82356 5.86541 5.96812 6.22765 6.36610 6.67405 6.71054 6.80157 8.11282 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024953 B = 0.004953 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.850841 B = 5651.339769 C = 6209.599406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.197 4.197 3 C -0.057 4.057 4 C -0.216 4.216 5 C 0.094 3.906 6 C -0.295 4.295 7 C 0.394 3.606 8 O -0.530 6.530 9 C -0.155 4.155 10 C -0.078 4.078 11 H 0.073 0.927 12 C -0.142 4.142 13 C -0.099 4.099 14 C -0.054 4.054 15 C -0.254 4.254 16 C 0.083 3.917 17 C -0.469 4.469 18 H 0.067 0.933 19 C 0.049 3.951 20 N -0.837 5.837 21 Si 0.963 3.037 22 H -0.258 1.258 23 H -0.278 1.278 24 H -0.248 1.248 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.126 12.779 -7.154 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.198 4.198 3 C -0.075 4.075 4 C -0.217 4.217 5 C 0.093 3.907 6 C -0.314 4.314 7 C 0.280 3.720 8 O -0.414 6.414 9 C -0.193 4.193 10 C -0.097 4.097 11 H 0.091 0.909 12 C -0.199 4.199 13 C -0.136 4.136 14 C -0.072 4.072 15 C -0.273 4.273 16 C 0.080 3.920 17 C -0.497 4.497 18 H 0.085 0.915 19 C -0.168 4.168 20 N -0.462 5.462 21 Si 0.786 3.214 22 H -0.183 1.183 23 H -0.205 1.205 24 H -0.172 1.172 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.144 0.856 38 H 0.117 0.883 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.999 12.830 -6.674 17.033 hybrid contribution -0.210 -0.923 0.155 0.959 sum 8.790 11.906 -6.519 16.172 Atomic orbital electron populations 1.20440 0.91562 1.01041 1.01129 1.19781 0.96211 0.92614 1.11187 1.20595 0.92803 0.96626 0.97447 1.18538 0.92930 0.92071 1.18184 1.21387 0.87195 0.89467 0.92617 1.22099 1.09387 0.98835 1.01061 1.21348 0.78531 0.84776 0.87296 1.90544 1.59326 1.55895 1.35646 1.22200 1.00786 1.03323 0.92947 1.21168 1.00811 0.93098 0.94631 0.90871 1.21787 0.99333 1.02279 0.96471 1.21112 1.00309 0.96748 0.95417 1.20662 0.98915 0.91120 0.96506 1.20789 0.94192 0.97441 1.14851 1.17861 0.92138 0.92926 0.89037 1.19571 1.05360 0.93063 1.31699 0.91502 1.26939 0.98640 0.93629 0.97548 1.69601 1.39941 1.00172 1.36522 0.85510 0.78181 0.79648 0.78041 1.18342 1.20501 1.17175 0.92324 0.93570 0.91680 0.86527 0.87906 0.87982 0.86398 0.91261 0.91680 0.91332 0.88997 0.87232 0.85597 0.88312 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.29 9.61 71.23 0.68 -2.61 16 2 C -0.20 -8.56 5.90 -19.68 -0.12 -8.67 16 3 C -0.06 -2.18 9.27 22.32 0.21 -1.97 16 4 C -0.22 -7.76 5.26 -20.01 -0.11 -7.87 16 5 C 0.09 2.70 5.27 -18.44 -0.10 2.60 16 6 C -0.29 -9.12 9.27 22.17 0.21 -8.92 16 7 C 0.39 11.41 6.81 26.25 0.18 11.59 16 8 O -0.53 -19.43 17.82 -3.62 -0.06 -19.49 16 9 C -0.16 -2.93 5.37 29.91 0.16 -2.77 16 10 C -0.08 -1.31 2.78 -10.69 -0.03 -1.34 16 11 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 12 C -0.14 -1.62 9.21 71.98 0.66 -0.95 16 13 C -0.10 -2.02 5.13 29.84 0.15 -1.86 16 14 C -0.05 -2.05 9.69 22.32 0.22 -1.83 16 15 C -0.25 -11.31 7.08 22.46 0.16 -11.15 16 16 C 0.08 4.02 5.09 -21.26 -0.11 3.91 16 17 C -0.47 -24.82 8.89 23.40 0.21 -24.61 16 18 H 0.07 3.80 6.53 -2.91 -0.02 3.78 16 19 C 0.05 2.50 5.41 85.40 0.46 2.96 16 20 N -0.84 -43.81 13.91 21.90 0.30 -43.51 16 21 Si 0.96 40.29 24.52 68.60 1.68 41.98 16 22 H -0.26 -10.22 6.72 99.48 0.67 -9.55 16 23 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 24 H -0.25 -10.50 6.86 99.48 0.68 -9.81 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 1.92 6.30 -2.38 -0.02 1.91 16 27 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 28 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 29 H 0.10 3.65 8.04 -2.91 -0.02 3.62 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.12 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 36 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 38 H 0.10 4.41 4.81 -2.91 -0.01 4.39 16 39 H 0.30 13.88 8.29 -92.71 -0.77 13.11 16 Total: -1.00 -60.54 318.37 5.74 -54.80 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.98 Total: 19.71 kcal Atomic # 6 Polarization: -56.33 SS G_CDS: 2.84 Total: -53.49 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.30 Total: -43.51 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.06 Total: -19.49 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.68 Total: 41.98 kcal Total: -60.54 5.74 -54.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242746292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.942 kcal (2) G-P(sol) polarization free energy of solvation -60.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds