Wall clock time and date at job start Mon Mar 30 2020 19:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47371 * 2 1 4 4 C 1.36928 * 120.00007 * 95.50057 * 3 2 1 5 5 H 1.08006 * 120.00334 * 38.34092 * 4 3 2 6 6 C 1.38817 * 120.00285 * 218.62420 * 4 3 2 7 7 N 1.31616 * 120.00100 * 211.04239 * 6 4 3 8 8 Si 1.86800 * 119.99565 * 31.03420 * 6 4 3 9 9 H 1.48494 * 109.47264 * 93.88453 * 8 6 4 10 10 H 1.48510 * 109.47006 * 213.88191 * 8 6 4 11 11 H 1.48500 * 109.47484 * 333.87972 * 8 6 4 12 12 C 1.46499 * 120.00036 * 275.49994 * 3 2 1 13 13 C 1.50707 * 109.46956 * 275.40652 * 12 3 2 14 14 C 1.39352 * 119.56200 * 269.72402 * 13 12 3 15 15 C 1.36072 * 121.06324 * 179.72979 * 14 13 12 16 16 C 1.40599 * 119.74730 * 0.56592 * 15 14 13 17 17 N 1.33678 * 121.07147 * 179.67319 * 16 15 14 18 18 C 1.31085 * 121.32292 * 180.02562 * 17 16 15 19 19 C 1.50697 * 119.12342 * 180.02562 * 18 17 16 20 20 C 1.39326 * 121.74586 * 359.97438 * 18 17 16 21 21 C 1.36577 * 119.93716 * 359.97438 * 20 18 17 22 22 C 1.40765 * 118.15355 * 0.04332 * 21 20 18 23 23 C 1.36138 * 119.56215 * 90.00323 * 13 12 3 24 24 H 1.08998 * 109.47485 * 179.83147 * 1 2 3 25 25 H 1.09000 * 109.46787 * 299.83489 * 1 2 3 26 26 H 1.08999 * 109.47160 * 59.83048 * 1 2 3 27 27 H 1.09005 * 109.47041 * 239.99855 * 2 1 3 28 28 H 1.09001 * 109.46754 * 119.99965 * 2 1 3 29 29 H 0.96999 * 119.99638 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47049 * 35.40063 * 12 3 2 31 31 H 1.08994 * 109.47499 * 155.40410 * 12 3 2 32 32 H 1.08000 * 119.46964 * 0.02562 * 14 13 12 33 33 H 1.07998 * 120.12881 * 180.23830 * 15 14 13 34 34 H 1.08998 * 109.47632 * 89.99984 * 19 18 17 35 35 H 1.09002 * 109.46871 * 209.99538 * 19 18 17 36 36 H 1.08997 * 109.47924 * 329.99846 * 19 18 17 37 37 H 1.07995 * 120.03253 * 179.97438 * 20 18 17 38 38 H 1.08002 * 120.92145 * 179.97438 * 21 20 18 39 39 H 1.08001 * 120.19781 * 359.95011 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3538 1.9888 1.1804 5 1 2.8519 1.4252 1.9554 6 6 2.0483 3.3276 1.3832 7 7 2.8241 4.0719 2.1425 8 14 0.5363 4.0729 0.5784 9 1 -0.6084 4.0104 1.5222 10 1 0.8105 5.4892 0.2259 11 1 0.2048 3.3117 -0.6528 12 6 2.1479 2.1123 -1.2629 13 6 3.4752 1.7864 -1.8981 14 6 4.5895 2.5694 -1.6027 15 6 5.8036 2.2993 -2.1546 16 6 5.9400 1.2215 -3.0471 17 7 7.1187 0.9365 -3.6096 18 6 7.2514 -0.0668 -4.4427 19 6 8.6035 -0.3439 -5.0477 20 6 6.1757 -0.8843 -4.7829 21 6 4.9434 -0.6490 -4.2432 22 6 4.8047 0.4295 -3.3493 23 6 3.5683 0.7345 -2.7573 24 1 -0.3634 -1.0276 -0.0030 25 1 -0.3633 0.5113 0.8915 26 1 -0.3633 0.5165 -0.8884 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.6108 5.0075 2.2839 30 1 1.3417 1.8206 -1.9359 31 1 2.0907 3.1835 -1.0701 32 1 4.4889 3.4010 -0.9211 33 1 6.6580 2.9137 -1.9121 34 1 9.1535 -1.0338 -4.4077 35 1 8.4757 -0.7879 -6.0350 36 1 9.1594 0.5893 -5.1382 37 1 6.3162 -1.7033 -5.4727 38 1 4.0985 -1.2725 -4.4961 39 1 2.6968 0.1373 -2.9813 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275692998.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:47:32 Heat of formation + Delta-G solvation = 52.066323 kcal Electronic energy + Delta-G solvation = -20207.570772 eV Core-core repulsion = 17307.696388 eV Total energy + Delta-G solvation = -2899.874384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.75062 -39.08909 -37.27443 -34.41941 -34.01881 -33.26620 -31.46168 -30.83047 -29.22362 -26.73543 -25.49507 -24.66856 -22.97168 -22.94064 -21.71667 -19.09848 -18.80989 -17.66891 -17.20047 -16.84297 -16.17779 -15.59512 -15.54164 -15.32451 -15.10652 -14.78510 -14.68024 -14.07814 -13.97378 -13.77533 -13.70786 -13.36504 -12.98558 -12.96900 -12.72797 -12.60339 -12.44695 -12.16389 -12.04984 -11.91989 -11.56022 -11.45749 -11.42039 -10.61258 -10.38870 -9.49920 -9.08672 -8.75825 -8.24493 -5.52325 -0.46131 -0.07755 1.11438 1.34987 1.44452 1.52259 1.99552 2.44700 2.98949 3.19381 3.30895 3.57089 3.68766 3.83079 3.95239 4.01224 4.17424 4.33915 4.41527 4.49830 4.54696 4.60500 4.72929 4.75519 4.83679 4.84037 4.91475 4.96730 5.07685 5.10086 5.16782 5.18710 5.26745 5.28838 5.44322 5.56133 5.71349 5.74874 5.92895 6.01647 6.20909 7.01027 7.05168 7.65280 8.09602 8.95409 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026526 B = 0.005225 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.326546 B = 5357.421002 C = 5968.838950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 N -0.604 5.604 4 C -0.263 4.263 5 H 0.031 0.969 6 C -0.002 4.002 7 N -0.931 5.931 8 Si 0.912 3.088 9 H -0.296 1.296 10 H -0.299 1.299 11 H -0.232 1.232 12 C 0.180 3.820 13 C -0.096 4.096 14 C -0.081 4.081 15 C -0.119 4.119 16 C 0.105 3.895 17 N -0.513 5.513 18 C 0.138 3.862 19 C -0.101 4.101 20 C -0.173 4.173 21 C -0.054 4.054 22 C -0.120 4.120 23 C -0.088 4.088 24 H 0.074 0.926 25 H 0.030 0.970 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.263 0.737 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.105 0.895 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.176 0.824 38 H 0.172 0.828 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -11.741 -17.766 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 N -0.325 5.325 4 C -0.392 4.392 5 H 0.049 0.951 6 C -0.200 4.200 7 N -0.573 5.573 8 Si 0.738 3.262 9 H -0.224 1.224 10 H -0.227 1.227 11 H -0.155 1.155 12 C 0.055 3.945 13 C -0.099 4.099 14 C -0.102 4.102 15 C -0.138 4.138 16 C -0.015 4.015 17 N -0.224 5.224 18 C -0.015 4.015 19 C -0.158 4.158 20 C -0.192 4.192 21 C -0.080 4.080 22 C -0.123 4.123 23 C -0.107 4.107 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.123 0.877 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.194 0.806 38 H 0.189 0.811 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.961 -11.010 -17.389 20.959 hybrid contribution -1.177 0.792 0.663 1.566 sum 2.784 -10.218 -16.726 19.797 Atomic orbital electron populations 1.22216 0.97751 1.01395 1.00683 1.21038 0.93064 0.84658 0.99879 1.44171 1.75072 1.12318 1.00989 1.18470 1.31998 0.94061 0.94702 0.95142 1.25982 0.99364 0.97018 0.97657 1.70134 1.36735 1.06921 1.43515 0.86355 0.82534 0.77067 0.80263 1.22418 1.22651 1.15522 1.20300 0.91571 0.95639 0.86986 1.20680 0.97826 0.95904 0.95507 1.20841 0.92798 0.99334 0.97192 1.20754 0.97643 0.97587 0.97768 1.18915 0.89467 0.96043 0.97115 1.67831 1.24624 1.19338 1.10578 1.22207 0.98295 0.89555 0.91421 1.20859 0.90222 1.03147 1.01618 1.22078 0.92458 1.01987 1.02696 1.21852 0.99506 0.94148 0.92452 1.19073 0.94491 0.98277 1.00410 1.21000 0.96834 0.96730 0.96153 0.90697 0.95039 0.93176 0.91859 0.94156 0.92846 0.90783 0.94008 0.87677 0.85502 0.89302 0.87545 0.91274 0.80629 0.81072 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 10.23 71.98 0.74 -4.44 16 2 C 0.14 5.10 6.41 86.38 0.55 5.65 16 3 N -0.60 -27.37 2.01 -706.33 -1.42 -28.79 16 4 C -0.26 -14.66 9.77 84.04 0.82 -13.84 16 5 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 6 C 0.00 -0.10 5.05 84.86 0.43 0.32 16 7 N -0.93 -57.35 13.97 21.65 0.30 -57.05 16 8 Si 0.91 44.02 26.32 68.60 1.81 45.83 16 9 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 10 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 11 H -0.23 -10.04 5.71 99.48 0.57 -9.47 16 12 C 0.18 7.37 3.94 85.64 0.34 7.71 16 13 C -0.10 -3.71 5.42 -20.08 -0.11 -3.82 16 14 C -0.08 -3.39 9.58 22.03 0.21 -3.17 16 15 C -0.12 -4.60 9.98 22.34 0.22 -4.38 16 16 C 0.11 3.76 6.60 40.29 0.27 4.03 16 17 N -0.51 -16.92 10.24 -176.76 -1.81 -18.72 16 18 C 0.14 3.34 6.78 42.93 0.29 3.63 16 19 C -0.10 -1.56 10.14 71.24 0.72 -0.84 16 20 C -0.17 -3.30 9.64 22.14 0.21 -3.09 16 21 C -0.05 -1.18 9.90 22.50 0.22 -0.96 16 22 C -0.12 -3.72 5.74 -21.28 -0.12 -3.84 16 23 C -0.09 -2.76 8.98 22.31 0.20 -2.56 16 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 27 H 0.06 1.98 7.49 -2.38 -0.02 1.96 16 28 H 0.04 1.57 8.00 -2.39 -0.02 1.56 16 29 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.07 2.59 7.97 -2.39 -0.02 2.57 16 31 H 0.04 1.89 4.53 -2.39 -0.01 1.88 16 32 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 33 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 0.93 8.07 -2.39 -0.02 0.91 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.15 3.75 7.84 -2.91 -0.02 3.73 16 Total: -1.00 -70.70 323.80 4.76 -65.94 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.89 Total: 12.39 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 5.00 Total: -19.59 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -2.93 Total: -104.57 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.81 Total: 45.83 kcal Total: -70.70 4.76 -65.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275692998.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.003 kcal (2) G-P(sol) polarization free energy of solvation -70.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds