Wall clock time and date at job start Mon Mar 30 2020 19:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00067 * 2 1 4 4 N 1.46898 * 109.47132 * 125.95468 * 3 2 1 5 5 C 1.46891 * 111.00429 * 66.29825 * 4 3 2 6 6 C 1.50696 * 109.47409 * 66.04358 * 5 4 3 7 7 H 1.07996 * 120.00049 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00115 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00032 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00023 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47174 * 59.99681 * 10 8 6 12 12 H 1.48504 * 109.47074 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47008 * 299.99784 * 10 8 6 14 14 C 1.46906 * 110.99695 * 302.33799 * 4 3 2 15 15 C 1.50698 * 109.47218 * 288.03227 * 14 4 3 16 16 C 1.34242 * 125.03353 * 94.95125 * 15 14 4 17 17 C 1.46483 * 106.99412 * 179.97438 * 16 15 14 18 18 C 1.39636 * 134.03020 * 180.02562 * 17 16 15 19 19 C 1.36625 * 119.76582 * 179.97438 * 18 17 16 20 20 C 1.38836 * 120.52769 * 0.03068 * 19 18 17 21 21 C 1.37751 * 120.66440 * 359.97438 * 20 19 18 22 22 C 1.39120 * 119.77957 * 359.95731 * 21 20 19 23 23 N 1.36828 * 125.03317 * 274.63968 * 15 14 4 24 24 H 0.96998 * 125.06437 * 0.02562 * 23 15 14 25 25 H 1.07996 * 119.99646 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99791 * 0.02562 * 1 2 3 27 27 H 1.08006 * 120.00013 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46860 * 5.94529 * 3 2 1 29 29 H 1.09005 * 109.46631 * 245.94798 * 3 2 1 30 30 H 1.08999 * 109.47070 * 186.04764 * 5 4 3 31 31 H 1.09003 * 109.46862 * 306.04429 * 5 4 3 32 32 H 0.97000 * 120.00011 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.46381 * 48.03438 * 14 4 3 34 34 H 1.09000 * 109.46860 * 168.03151 * 14 4 3 35 35 H 1.08002 * 126.50106 * 359.97063 * 16 15 14 36 36 H 1.07996 * 120.11652 * 359.97438 * 18 17 16 37 37 H 1.08001 * 119.73783 * 180.02562 * 19 18 17 38 38 H 1.08003 * 119.66786 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.10869 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0126 1.3226 1.1211 5 6 4.0666 0.3166 0.9344 6 6 4.9116 0.6893 -0.2564 7 1 4.6882 1.5842 -0.8181 8 6 5.9698 -0.1123 -0.6288 9 7 6.2414 -1.2024 0.0549 10 14 7.0176 0.3501 -2.1045 11 1 7.6381 1.6794 -1.8740 12 1 8.0831 -0.6670 -2.2933 13 1 6.1650 0.4058 -3.3191 14 6 2.3188 1.1271 2.4012 15 6 1.5356 2.3683 2.7428 16 6 0.2362 2.5603 2.4654 17 6 -0.1170 3.8900 2.9682 18 6 -1.2932 4.6425 2.9795 19 6 -1.2967 5.8874 3.5424 20 6 -0.1395 6.4110 4.1031 21 6 1.0317 5.6860 4.1027 22 6 1.0577 4.4156 3.5362 23 7 2.0419 3.4641 3.3870 24 1 2.9581 3.5577 3.6913 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3600 2.1308 0.1064 29 1 2.6079 1.4103 -0.9385 30 1 4.6925 0.2765 1.8259 31 1 3.6115 -0.6594 0.7658 32 1 6.9857 -1.7665 -0.2073 33 1 1.6388 0.2791 2.3199 34 1 3.0508 0.9321 3.1850 35 1 -0.4235 1.8661 1.9661 36 1 -2.1970 4.2418 2.5448 37 1 -2.2068 6.4688 3.5513 38 1 -0.1579 7.3968 4.5440 39 1 1.9267 6.1022 4.5410 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590050737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:46:29 Heat of formation + Delta-G solvation = 80.281013 kcal Electronic energy + Delta-G solvation = -19939.023946 eV Core-core repulsion = 17040.373043 eV Total energy + Delta-G solvation = -2898.650903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.143 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.07531 -37.74282 -36.45720 -33.01788 -32.23552 -31.74663 -29.73432 -29.04272 -27.00757 -26.24223 -23.90638 -22.08192 -21.38675 -21.10611 -19.96337 -18.90736 -17.42563 -16.40316 -16.03746 -15.26549 -15.14604 -14.75738 -14.26547 -14.17403 -13.89480 -13.70456 -13.53337 -12.97463 -12.88694 -12.42544 -12.01986 -11.75916 -11.53275 -11.35041 -11.09631 -10.88597 -10.85956 -10.77667 -10.66360 -10.48189 -9.92013 -9.54539 -9.38610 -8.88265 -8.50132 -7.98248 -7.53203 -7.32921 -6.08978 -4.10491 1.26813 1.77777 2.70177 2.93707 3.29988 3.34253 3.36021 3.37489 4.05831 4.38240 4.81952 4.94937 5.10860 5.13031 5.26894 5.30108 5.42488 5.53938 5.56232 5.62407 5.68927 5.82578 6.01012 6.04858 6.08250 6.18789 6.21909 6.39302 6.56891 6.61348 6.71212 6.93480 6.97667 7.07370 7.09186 7.27689 7.28823 7.37453 7.70935 7.78090 7.97659 8.08957 8.43504 8.96377 9.53980 11.01603 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024867 B = 0.004331 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.712241 B = 6462.756047 C = 6998.898573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C 0.084 3.916 4 N -0.525 5.525 5 C 0.190 3.810 6 C -0.508 4.508 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.102 3.898 15 C 0.121 3.879 16 C -0.214 4.214 17 C -0.103 4.103 18 C -0.075 4.075 19 C -0.153 4.153 20 C -0.110 4.110 21 C -0.128 4.128 22 C 0.095 3.905 23 N -0.582 5.582 24 H 0.416 0.584 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.029 0.971 31 H -0.001 1.001 32 H 0.262 0.738 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.630 9.024 6.858 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.182 4.182 3 C -0.044 4.044 4 N -0.248 5.248 5 C 0.066 3.934 6 C -0.547 4.547 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.027 4.027 15 C 0.012 3.988 16 C -0.239 4.239 17 C -0.108 4.108 18 C -0.094 4.094 19 C -0.173 4.173 20 C -0.129 4.129 21 C -0.149 4.149 22 C -0.013 4.013 23 N -0.184 5.184 24 H 0.252 0.748 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.047 0.953 31 H 0.017 0.983 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.094 9.301 6.909 16.748 hybrid contribution 0.756 -0.660 -0.697 1.222 sum -11.338 8.641 6.212 15.550 Atomic orbital electron populations 1.23717 0.95949 1.00919 1.04289 1.23866 0.96280 1.01274 0.96731 1.21343 0.93849 0.92791 0.96450 1.62396 1.11310 1.52220 0.98885 1.19800 0.87837 0.88120 0.97660 1.21080 1.12614 1.08774 1.12214 0.91922 1.24959 0.97435 0.94948 0.97068 1.69938 1.29791 1.14027 1.40018 0.86573 0.79912 0.78137 0.82877 1.20196 1.21344 1.20213 1.20764 0.96474 0.90793 0.94672 1.20448 0.93225 0.89421 0.95738 1.21452 0.94970 0.96780 1.10693 1.19233 0.93213 0.95484 1.02908 1.20234 0.96303 0.93929 0.98894 1.20538 0.98196 0.96295 1.02239 1.20699 0.92273 0.99300 1.00624 1.20009 0.98925 0.92251 1.03738 1.18253 0.89085 0.91798 1.02204 1.41800 1.11572 1.13620 1.51403 0.74750 0.89425 0.88935 0.87200 0.91651 0.88980 0.95332 0.98278 0.92819 0.92211 0.90436 0.83951 0.86465 0.86550 0.86258 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.06 13.86 29.01 0.40 -2.65 16 2 C -0.16 -2.80 7.38 -36.02 -0.27 -3.06 16 3 C 0.08 1.58 5.45 -4.98 -0.03 1.55 16 4 N -0.53 -10.63 4.65 -238.96 -1.11 -11.74 16 5 C 0.19 4.65 4.57 -4.98 -0.02 4.63 16 6 C -0.51 -13.71 8.42 -34.44 -0.29 -14.00 16 7 H 0.06 1.69 7.14 -52.49 -0.37 1.31 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -25.88 13.29 55.43 0.74 -25.14 16 10 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.10 1.74 5.33 -4.97 -0.03 1.71 16 15 C 0.12 1.92 6.05 -81.77 -0.49 1.43 16 16 C -0.21 -3.28 10.06 -37.67 -0.38 -3.66 16 17 C -0.10 -1.56 6.37 -105.14 -0.67 -2.23 16 18 C -0.08 -0.97 10.05 -39.64 -0.40 -1.37 16 19 C -0.15 -1.76 9.97 -39.94 -0.40 -2.16 16 20 C -0.11 -1.24 10.01 -39.54 -0.40 -1.64 16 21 C -0.13 -1.62 10.08 -39.43 -0.40 -2.02 16 22 C 0.09 1.39 7.28 -83.99 -0.61 0.78 16 23 N -0.58 -8.58 6.07 -6.95 -0.04 -8.63 16 24 H 0.42 5.39 8.96 -40.82 -0.37 5.03 16 25 H 0.09 1.15 8.06 -52.49 -0.42 0.72 16 26 H 0.09 1.25 7.15 -52.49 -0.38 0.87 16 27 H 0.11 2.11 6.82 -52.48 -0.36 1.75 16 28 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 29 H 0.09 1.92 6.71 -51.93 -0.35 1.57 16 30 H 0.03 0.75 7.86 -51.93 -0.41 0.34 16 31 H 0.00 -0.01 6.43 -51.93 -0.33 -0.35 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.06 1.00 6.62 -51.93 -0.34 0.66 16 34 H 0.08 1.30 7.81 -51.93 -0.41 0.89 16 35 H 0.14 2.03 6.87 -52.49 -0.36 1.67 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 322.72 15.07 4.86 4.86 Total: -1.00 -29.19 322.72 -9.91 -39.10 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.26 Total: 6.53 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -4.07 Total: -21.20 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.42 Total: -45.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.19 -9.91 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590050737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.383 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds