Wall clock time and date at job start Mon Mar 30 2020 19:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47446 * 2 1 4 4 H 1.09000 * 109.47135 * 55.00273 * 3 2 1 5 5 F 1.39892 * 109.47220 * 294.99836 * 3 2 1 6 6 C 1.50698 * 109.47042 * 174.99627 * 3 2 1 7 7 O 1.21288 * 119.99858 * 44.02073 * 6 3 2 8 8 N 1.34781 * 120.00258 * 224.01707 * 6 3 2 9 9 C 1.47169 * 120.70812 * 184.96438 * 8 6 3 10 10 C 1.53886 * 108.02797 * 132.74135 * 9 8 6 11 11 H 1.08997 * 112.09088 * 181.90647 * 10 9 8 12 12 C 1.54547 * 108.36541 * 306.24463 * 10 9 8 13 13 C 1.54827 * 104.73987 * 89.17901 * 12 10 9 14 14 C 1.54546 * 104.74592 * 359.97438 * 13 12 10 15 15 H 1.09000 * 112.67951 * 146.81417 * 14 13 12 16 16 C 1.47160 * 120.70615 * 4.94530 * 8 6 3 17 17 N 1.48303 * 104.35591 * 24.82767 * 14 13 12 18 18 C 1.36933 * 128.07754 * 139.07834 * 17 14 13 19 19 H 1.07999 * 120.00330 * 336.83882 * 18 17 14 20 20 C 1.38812 * 120.00178 * 156.83499 * 18 17 14 21 21 N 1.31618 * 119.99728 * 354.30140 * 20 18 17 22 22 Si 1.86803 * 120.00257 * 174.29833 * 20 18 17 23 23 H 1.48501 * 109.46964 * 179.97438 * 22 20 18 24 24 H 1.48490 * 109.47047 * 300.00295 * 22 20 18 25 25 H 1.48501 * 109.46972 * 60.00446 * 22 20 18 26 26 H 1.08996 * 109.47400 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46913 * 299.99999 * 1 2 3 28 28 H 1.09003 * 109.46918 * 59.99571 * 1 2 3 29 29 H 1.08999 * 109.46913 * 240.00001 * 2 1 3 30 30 H 1.09003 * 109.46918 * 120.00428 * 2 1 3 31 31 H 1.08992 * 109.74763 * 13.10571 * 9 8 6 32 32 H 1.09002 * 109.78732 * 252.39626 * 9 8 6 33 33 H 1.09001 * 110.36263 * 208.13925 * 12 10 9 34 34 H 1.08997 * 110.36778 * 330.46063 * 12 10 9 35 35 H 1.09001 * 110.30839 * 241.24512 * 13 12 10 36 36 H 1.08996 * 110.61667 * 118.91245 * 13 12 10 37 37 H 1.08997 * 109.75164 * 346.89340 * 16 8 6 38 38 H 1.09002 * 109.75067 * 107.58161 * 16 8 6 39 39 H 0.97001 * 119.99841 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 9 1.6701 2.0679 -1.1954 6 6 3.5420 1.4441 0.1239 7 8 4.2054 0.6686 -0.5314 8 7 4.1480 2.3075 0.9629 9 6 5.6159 2.3981 1.0167 10 6 6.0034 3.8866 0.9675 11 1 7.0840 4.0292 0.9702 12 6 5.3338 4.5233 -0.2713 13 6 3.9520 5.0069 0.2327 14 6 3.9193 4.6152 1.7273 15 1 3.3572 5.3241 2.3353 16 6 3.3560 3.1800 1.8444 17 7 5.3475 4.5481 2.1212 18 6 5.9251 4.9891 3.2818 19 1 5.4430 5.7585 3.8665 20 6 7.1303 4.4471 3.7068 21 7 7.6616 3.4334 3.0569 22 14 7.9981 5.1565 5.2012 23 1 9.2558 4.4058 5.4459 24 1 8.3140 6.5868 4.9575 25 1 7.1139 5.0402 6.3886 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 6.0486 1.8764 0.1631 32 1 5.9794 1.9532 1.9431 33 1 5.9252 5.3652 -0.6313 34 1 5.2103 3.7807 -1.0595 35 1 3.1533 4.5006 -0.3093 36 1 3.8594 6.0872 0.1211 37 1 2.3119 3.1693 1.5317 38 1 3.4355 2.8327 2.8745 39 1 8.5039 3.0549 3.3537 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029424236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:47:55 Heat of formation + Delta-G solvation = -51.897217 kcal Electronic energy + Delta-G solvation = -22402.021395 eV Core-core repulsion = 19066.869589 eV Total energy + Delta-G solvation = -3335.151806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.72219 -39.95947 -37.83770 -34.03737 -33.76525 -32.42082 -30.72306 -29.32490 -27.88521 -25.89945 -23.99437 -23.66192 -21.93123 -19.98123 -19.62362 -18.64318 -17.68645 -16.57100 -16.22707 -15.72402 -15.24380 -14.77249 -14.70155 -13.98029 -13.78079 -13.49683 -13.39285 -13.08080 -12.92006 -12.73221 -12.20648 -11.91492 -11.88387 -11.67077 -11.60450 -11.15482 -11.11434 -10.91504 -10.87062 -10.62680 -10.36781 -10.07181 -9.92819 -9.83868 -9.61572 -9.18817 -8.74795 -8.15463 -6.81531 -5.91795 -3.31123 2.83493 3.32307 3.35990 3.38627 3.39152 4.35918 4.51345 4.57571 4.62811 4.89556 5.13019 5.26224 5.28887 5.39517 5.53803 5.59883 5.64935 5.70751 5.78016 5.82896 5.90486 6.04964 6.12421 6.16655 6.30452 6.34374 6.50788 6.59735 6.64150 6.76904 6.81288 6.92867 7.26844 7.44178 7.64454 7.94562 8.09715 8.50364 8.99391 9.60983 10.41139 11.22154 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.030433 B = 0.005679 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.841155 B = 4929.546017 C = 5049.487590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.139 4.139 3 C 0.074 3.926 4 H 0.102 0.898 5 F -0.194 7.194 6 C 0.483 3.517 7 O -0.543 6.543 8 N -0.581 5.581 9 C 0.111 3.889 10 C 0.171 3.829 11 H 0.108 0.892 12 C -0.137 4.137 13 C -0.123 4.123 14 C 0.133 3.867 15 H 0.080 0.920 16 C 0.086 3.914 17 N -0.582 5.582 18 C -0.234 4.234 19 H 0.074 0.926 20 C 0.004 3.996 21 N -0.910 5.910 22 Si 0.912 3.088 23 H -0.290 1.290 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 -2.120 -3.786 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C 0.035 3.965 4 H 0.120 0.880 5 F -0.175 7.175 6 C 0.268 3.732 7 O -0.421 6.421 8 N -0.312 5.312 9 C -0.012 4.012 10 C 0.064 3.936 11 H 0.126 0.874 12 C -0.176 4.176 13 C -0.162 4.162 14 C 0.025 3.975 15 H 0.098 0.902 16 C -0.039 4.039 17 N -0.303 5.303 18 C -0.362 4.362 19 H 0.091 0.909 20 C -0.194 4.194 21 N -0.554 5.554 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.932 -2.525 -3.959 11.898 hybrid contribution 0.429 0.329 0.798 0.964 sum -10.502 -2.196 -3.161 11.186 Atomic orbital electron populations 1.21771 0.94505 1.02289 1.02365 1.21956 0.96824 0.94134 1.04835 1.21798 0.93521 0.95725 0.85448 0.88023 1.92842 1.92147 1.83982 1.48486 1.20765 0.89795 0.81596 0.81054 1.90666 1.66095 1.39411 1.45920 1.48314 1.08954 1.36379 1.37592 1.22552 0.76014 1.00000 1.02619 1.21703 0.98712 0.88712 0.84494 0.87443 1.22718 0.96377 0.99683 0.98798 1.22548 0.97266 0.99793 0.96624 1.22124 0.88773 0.92614 0.94032 0.90169 1.22874 0.93231 0.93682 0.94083 1.45105 1.00094 1.69421 1.15685 1.18901 1.04405 1.14925 0.97991 0.90875 1.25005 0.99400 0.96575 0.98455 1.69835 1.19932 1.24402 1.41239 0.86216 0.78871 0.78305 0.82390 1.21553 1.21040 1.20994 0.91973 0.92408 0.92059 0.89690 0.89974 0.91492 0.89233 0.92652 0.92892 0.92802 0.92441 0.91627 0.91013 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.83 37.16 0.37 -1.08 16 2 C -0.14 -1.72 5.40 -26.73 -0.14 -1.86 16 3 C 0.07 1.07 3.36 -27.89 -0.09 0.98 16 4 H 0.10 1.23 5.44 -51.93 -0.28 0.95 16 5 F -0.19 -3.04 16.75 2.25 0.04 -3.00 16 6 C 0.48 8.98 7.05 -10.98 -0.08 8.90 16 7 O -0.54 -11.81 16.08 5.55 0.09 -11.72 16 8 N -0.58 -11.13 2.28 -171.07 -0.39 -11.52 16 9 C 0.11 2.44 5.75 -3.22 -0.02 2.42 16 10 C 0.17 3.85 3.05 -65.68 -0.20 3.65 16 11 H 0.11 2.73 6.81 -51.93 -0.35 2.37 16 12 C -0.14 -2.66 6.23 -24.96 -0.16 -2.81 16 13 C -0.12 -2.16 6.24 -24.96 -0.16 -2.32 16 14 C 0.13 2.50 4.32 -65.27 -0.28 2.22 16 15 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 16 C 0.09 1.48 5.81 -2.83 -0.02 1.46 16 17 N -0.58 -13.48 2.77 -152.19 -0.42 -13.90 16 18 C -0.23 -5.98 10.34 -15.06 -0.16 -6.13 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C 0.00 0.11 5.43 -17.43 -0.09 0.01 16 21 N -0.91 -24.57 10.13 55.49 0.56 -24.01 16 22 Si 0.91 20.78 29.56 -169.99 -5.02 15.75 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.60 7.94 -51.93 -0.41 0.18 16 29 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.50 7.16 -51.93 -0.37 1.13 16 32 H 0.09 2.24 7.27 -51.93 -0.38 1.86 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 1.03 7.86 -51.93 -0.41 0.62 16 35 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.89 5.33 -51.93 -0.28 0.61 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -28.80 308.54 -7.34 -36.14 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.81 Total: 2.19 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.03 Total: 5.43 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.25 Total: -49.44 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.00 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.80 -7.34 -36.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029424236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.755 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds