Wall clock time and date at job start Mon Mar 30 2020 19:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 H 1.09007 * 109.47076 * 305.00203 * 3 2 1 5 5 F 1.39897 * 109.47258 * 64.99937 * 3 2 1 6 6 C 1.50702 * 109.47115 * 185.00145 * 3 2 1 7 7 O 1.21279 * 119.99899 * 315.88287 * 6 3 2 8 8 N 1.34774 * 119.99620 * 135.88384 * 6 3 2 9 9 C 1.47621 * 120.90695 * 4.74893 * 8 6 3 10 10 C 1.53890 * 107.50257 * 132.48997 * 9 8 6 11 11 H 1.08999 * 112.09216 * 182.65835 * 10 9 8 12 12 C 1.54543 * 108.36920 * 307.00914 * 10 9 8 13 13 C 1.54278 * 104.85200 * 89.29712 * 12 10 9 14 14 C 1.54970 * 104.80697 * 359.81220 * 13 12 10 15 15 H 1.08994 * 112.25726 * 146.60838 * 14 13 12 16 16 C 1.47168 * 120.70765 * 185.43420 * 8 6 3 17 17 N 1.48312 * 107.20557 * 59.11766 * 10 9 8 18 18 C 1.36930 * 128.07793 * 106.09521 * 17 10 9 19 19 H 1.08004 * 120.00174 * 14.76323 * 18 17 10 20 20 C 1.38817 * 119.99932 * 194.75729 * 18 17 10 21 21 N 1.31614 * 120.00102 * 9.74705 * 20 18 17 22 22 Si 1.86801 * 119.99925 * 189.74347 * 20 18 17 23 23 H 1.48498 * 109.47226 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.46998 * 300.00350 * 22 20 18 25 25 H 1.48500 * 109.47133 * 60.00463 * 22 20 18 26 26 H 1.09001 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47128 * 299.99582 * 1 2 3 28 28 H 1.08996 * 109.47714 * 60.00105 * 1 2 3 29 29 H 1.08997 * 109.47309 * 239.99970 * 2 1 3 30 30 H 1.08994 * 109.47235 * 119.99696 * 2 1 3 31 31 H 1.08997 * 109.37908 * 13.37983 * 9 8 6 32 32 H 1.08998 * 110.63513 * 252.31753 * 9 8 6 33 33 H 1.09003 * 110.36017 * 208.14123 * 12 10 9 34 34 H 1.08999 * 110.36253 * 330.45243 * 12 10 9 35 35 H 1.09001 * 110.36485 * 118.83797 * 13 12 10 36 36 H 1.08998 * 110.36396 * 241.05009 * 13 12 10 37 37 H 1.08999 * 109.74871 * 107.60638 * 16 8 6 38 38 H 1.09005 * 109.74623 * 346.87558 * 16 8 6 39 39 H 0.97000 * 120.00167 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 9 1.6698 2.0680 1.1954 6 6 3.5419 1.4443 -0.1239 7 8 4.2054 0.6701 0.5327 8 7 4.1476 2.3064 -0.9643 9 6 3.3696 3.3265 -1.6946 10 6 4.1021 4.6702 -1.5336 11 1 3.5635 5.4902 -2.0086 12 6 4.3350 4.9204 -0.0264 13 6 5.6977 4.2640 0.2774 14 6 6.1626 3.6713 -1.0769 15 1 7.2459 3.7051 -1.1922 16 6 5.6009 2.2429 -1.1872 17 7 5.4649 4.4968 -2.0925 18 6 5.9612 4.9807 -3.2734 19 1 5.4290 5.7549 -3.8061 20 6 7.1486 4.4762 -3.7859 21 7 7.6972 3.4084 -3.2463 22 14 7.9678 5.3129 -5.2413 23 1 9.2129 4.5847 -5.5944 24 1 7.0427 5.3030 -6.4030 25 1 8.2988 6.7157 -4.8840 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.3711 3.3973 -1.2632 32 1 3.2975 3.0706 -2.7517 33 1 4.3751 5.9902 0.1787 34 1 3.5476 4.4498 0.5623 35 1 6.4079 5.0110 0.6319 36 1 5.5806 3.4718 1.0169 37 1 5.8040 1.8428 -2.1806 38 1 6.0619 1.6065 -0.4318 39 1 8.5267 3.0557 -3.6046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029424237.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:47:59 Heat of formation + Delta-G solvation = -51.720044 kcal Electronic energy + Delta-G solvation = -22365.305561 eV Core-core repulsion = 19030.161437 eV Total energy + Delta-G solvation = -3335.144124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.74022 -39.98336 -37.85719 -34.03358 -33.78193 -32.40741 -30.74202 -29.33684 -27.90606 -25.92372 -23.95862 -23.69140 -21.92293 -19.98531 -19.62265 -18.65592 -17.67132 -16.62812 -16.22576 -15.70514 -15.31611 -14.75054 -14.70826 -13.97474 -13.77083 -13.51594 -13.39114 -13.10538 -12.92051 -12.72249 -12.20890 -11.96659 -11.88634 -11.65949 -11.60909 -11.16545 -11.12036 -10.90003 -10.89423 -10.68534 -10.36094 -10.09812 -9.89193 -9.71144 -9.58923 -9.23788 -8.82749 -8.15958 -6.90944 -5.88451 -3.24182 2.81783 3.33100 3.33308 3.39440 3.39763 4.36793 4.49184 4.54838 4.65351 4.88191 5.11428 5.25922 5.28747 5.38427 5.54174 5.59755 5.64006 5.70927 5.78442 5.81848 5.91360 6.03756 6.11148 6.14704 6.29374 6.33249 6.52173 6.58614 6.64987 6.76324 6.81967 6.90501 7.22734 7.44892 7.64638 7.90884 8.09040 8.47970 9.00698 9.63088 10.39274 11.24336 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.030858 B = 0.005583 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.152307 B = 5014.020128 C = 5116.690166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.139 4.139 3 C 0.076 3.924 4 H 0.100 0.900 5 F -0.195 7.195 6 C 0.485 3.515 7 O -0.542 6.542 8 N -0.583 5.583 9 C 0.089 3.911 10 C 0.134 3.866 11 H 0.080 0.920 12 C -0.123 4.123 13 C -0.137 4.137 14 C 0.168 3.832 15 H 0.121 0.879 16 C 0.110 3.890 17 N -0.584 5.584 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.002 4.002 21 N -0.914 5.914 22 Si 0.913 3.087 23 H -0.290 1.290 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.432 -2.238 4.253 12.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C 0.037 3.963 4 H 0.118 0.882 5 F -0.175 7.175 6 C 0.269 3.731 7 O -0.420 6.420 8 N -0.314 5.314 9 C -0.036 4.036 10 C 0.025 3.975 11 H 0.098 0.902 12 C -0.163 4.163 13 C -0.177 4.177 14 C 0.061 3.939 15 H 0.138 0.862 16 C -0.013 4.013 17 N -0.305 5.305 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.199 4.199 21 N -0.559 5.559 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.841 -2.624 4.408 11.993 hybrid contribution 0.345 0.417 -0.797 0.964 sum -10.496 -2.208 3.611 11.317 Atomic orbital electron populations 1.21769 0.94482 1.02310 1.02369 1.21949 0.96837 0.94072 1.04851 1.21782 0.93406 0.95733 0.85372 0.88201 1.92845 1.92218 1.83981 1.48494 1.20764 0.89761 0.81565 0.80980 1.90664 1.66007 1.40513 1.44817 1.48434 1.10017 1.31293 1.41701 1.22784 0.93632 0.90698 0.96528 1.21940 0.88838 0.93542 0.93156 0.90220 1.22470 0.97464 0.99617 0.96713 1.22714 0.96434 0.99272 0.99237 1.21993 0.99509 0.87454 0.84968 0.86169 1.22508 0.76625 1.00447 1.01732 1.45195 1.05517 1.60300 1.19443 1.18961 1.05360 1.14657 0.96749 0.90544 1.24834 0.99274 0.96867 0.98932 1.69821 1.20784 1.22221 1.43114 0.86197 0.78810 0.78745 0.81939 1.21576 1.21103 1.21135 0.91953 0.92054 0.92406 0.89957 0.89665 0.91639 0.90975 0.92509 0.92841 0.92735 0.92839 0.90021 0.91126 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.83 37.16 0.37 -1.07 16 2 C -0.14 -1.70 5.40 -26.73 -0.14 -1.84 16 3 C 0.08 1.09 3.16 -27.88 -0.09 1.00 16 4 H 0.10 1.20 5.82 -51.92 -0.30 0.90 16 5 F -0.19 -3.02 16.75 2.25 0.04 -2.98 16 6 C 0.48 8.89 7.05 -10.99 -0.08 8.81 16 7 O -0.54 -11.64 16.05 5.56 0.09 -11.55 16 8 N -0.58 -11.02 2.24 -171.16 -0.38 -11.41 16 9 C 0.09 1.50 5.65 -2.96 -0.02 1.48 16 10 C 0.13 2.52 4.27 -65.66 -0.28 2.24 16 11 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 12 C -0.12 -2.20 6.18 -25.25 -0.16 -2.36 16 13 C -0.14 -2.72 6.21 -25.02 -0.16 -2.87 16 14 C 0.17 3.80 3.14 -65.43 -0.21 3.59 16 15 H 0.12 3.08 6.34 -51.93 -0.33 2.75 16 16 C 0.11 2.39 5.85 -3.22 -0.02 2.37 16 17 N -0.58 -13.54 2.80 -152.34 -0.43 -13.97 16 18 C -0.23 -5.86 10.37 -15.06 -0.16 -6.01 16 19 H 0.08 1.89 7.85 -52.48 -0.41 1.48 16 20 C 0.00 -0.04 5.42 -17.43 -0.09 -0.14 16 21 N -0.91 -24.73 10.45 55.49 0.58 -24.15 16 22 Si 0.91 20.86 29.56 -169.99 -5.03 15.83 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.59 7.94 -51.93 -0.41 0.18 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 31 H 0.07 0.90 5.70 -51.93 -0.30 0.60 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.90 7.86 -51.93 -0.41 0.50 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.06 7.85 -51.93 -0.41 0.65 16 37 H 0.08 1.99 7.86 -51.93 -0.41 1.58 16 38 H 0.07 1.57 7.08 -51.93 -0.37 1.20 16 39 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 309.34 15.07 4.66 4.66 Total: -1.00 -28.76 309.34 -7.35 -36.11 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.85 Total: 2.24 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -1.03 Total: 5.20 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.23 Total: -49.52 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.76 -7.35 -36.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029424237.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.608 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds