Wall clock time and date at job start Mon Mar 30 2020 19:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47379 * 2 1 4 4 H 1.09000 * 109.47182 * 54.99517 * 3 2 1 5 5 F 1.39901 * 109.47350 * 294.99947 * 3 2 1 6 6 C 1.50700 * 109.47216 * 174.99697 * 3 2 1 7 7 O 1.21279 * 119.99591 * 45.00052 * 6 3 2 8 8 N 1.34779 * 119.99948 * 224.99756 * 6 3 2 9 9 C 1.46637 * 125.32928 * 0.02562 * 8 6 3 10 10 C 1.53693 * 108.00465 * 179.14236 * 9 8 6 11 11 H 1.09004 * 113.05381 * 106.19668 * 10 9 8 12 12 C 1.53728 * 109.33697 * 232.44228 * 10 9 8 13 13 N 1.46668 * 107.94343 * 93.75024 * 12 10 9 14 14 C 1.36933 * 125.34279 * 179.48654 * 13 12 10 15 15 H 1.08000 * 119.99813 * 0.02562 * 14 13 12 16 16 C 1.38804 * 120.00346 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00041 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00135 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46902 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46811 * 120.00079 * 18 16 14 21 21 H 1.48490 * 109.47511 * 240.00197 * 18 16 14 22 22 C 1.46777 * 109.31996 * 359.45397 * 13 12 10 23 23 C 1.53964 * 106.62837 * 18.51842 * 22 13 12 24 24 H 1.08993 * 113.60965 * 94.61833 * 23 22 13 25 25 C 1.46744 * 125.32426 * 180.02562 * 8 6 3 26 26 H 1.09007 * 109.46849 * 300.00251 * 1 2 3 27 27 H 1.09002 * 109.46548 * 59.99734 * 1 2 3 28 28 H 1.08997 * 109.47181 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47093 * 239.99730 * 2 1 3 30 30 H 1.09007 * 109.46527 * 119.99798 * 2 1 3 31 31 H 1.08997 * 109.75994 * 59.50557 * 9 8 6 32 32 H 1.08998 * 109.76850 * 298.78329 * 9 8 6 33 33 H 1.09003 * 109.77012 * 213.37194 * 12 10 9 34 34 H 1.08996 * 109.77375 * 334.12949 * 12 10 9 35 35 H 0.97004 * 120.00313 * 179.97438 * 17 16 14 36 36 H 1.08997 * 110.02794 * 259.21924 * 22 13 12 37 37 H 1.09002 * 110.02597 * 137.81283 * 22 13 12 38 38 H 1.09002 * 110.01064 * 79.04786 * 25 8 6 39 39 H 1.08999 * 110.00927 * 317.67626 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 9 1.6701 2.0680 -1.1954 6 6 3.5420 1.4442 0.1239 7 8 4.2064 0.6809 -0.5445 8 7 4.1468 2.2940 0.9775 9 6 3.4604 3.2622 1.8388 10 6 4.5255 4.0064 2.6597 11 1 4.6897 5.0287 2.3190 12 6 4.1613 3.9331 4.1515 13 7 4.8598 2.7810 4.7310 14 6 4.7945 2.3928 6.0426 15 1 4.1908 2.9522 6.7418 16 6 5.5034 1.2798 6.4731 17 7 6.2388 0.5978 5.6208 18 14 5.4149 0.7507 8.2625 19 1 4.5269 1.6776 9.0093 20 1 4.8711 -0.6287 8.3444 21 1 6.7756 0.7824 8.8560 22 6 5.6392 2.1089 3.6845 23 6 5.7956 3.1198 2.5338 24 1 6.7239 3.6893 2.5762 25 6 5.5952 2.3951 1.1904 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.7772 2.7401 2.5085 32 1 2.9051 3.9721 1.2258 33 1 4.4781 4.8473 4.6536 34 1 3.0846 3.8055 4.2624 35 1 6.7346 -0.1798 5.9218 36 1 5.1085 1.2236 3.3343 37 1 6.6191 1.8285 4.0709 38 1 6.0514 2.9702 0.3845 39 1 6.0361 1.3993 1.2344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048985082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:48:30 Heat of formation + Delta-G solvation = -59.881345 kcal Electronic energy + Delta-G solvation = -21724.684195 eV Core-core repulsion = 18389.186170 eV Total energy + Delta-G solvation = -3335.498024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.90202 -40.22256 -38.24341 -35.05165 -34.03908 -32.35774 -30.59848 -29.60273 -27.77551 -25.54266 -25.44514 -23.18114 -21.79985 -20.22664 -19.44891 -19.42278 -17.64264 -16.86727 -16.55815 -16.31030 -15.44563 -15.16377 -14.66116 -14.11893 -13.96034 -13.73686 -13.35483 -13.31052 -13.00776 -12.79729 -12.39271 -12.10002 -11.97185 -11.80271 -11.71333 -11.51538 -11.19537 -11.00157 -10.93259 -10.86729 -10.48627 -10.17932 -10.12273 -9.89199 -9.66420 -9.58016 -8.69100 -8.46616 -6.90487 -5.73871 -3.13687 2.51894 2.95645 3.35702 3.41247 3.43924 4.25347 4.41115 4.43363 4.57372 4.74588 4.82678 4.93817 5.14642 5.24328 5.33806 5.44024 5.46851 5.53001 5.56476 5.61878 5.78702 5.83231 5.92988 5.97657 6.08623 6.12251 6.16153 6.22952 6.38033 6.49070 6.58422 6.76941 7.45100 7.56650 7.57788 7.77649 8.11528 8.26430 9.15976 9.76703 10.39314 11.32271 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.005346 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.739119 B = 5236.277610 C = 5683.688655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.141 4.141 3 C 0.085 3.915 4 H 0.100 0.900 5 F -0.193 7.193 6 C 0.507 3.493 7 O -0.528 6.528 8 N -0.598 5.598 9 C 0.106 3.894 10 C -0.109 4.109 11 H 0.092 0.908 12 C 0.145 3.855 13 N -0.602 5.602 14 C -0.228 4.228 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.921 5.921 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.170 3.830 23 C -0.122 4.122 24 H 0.096 0.904 25 C 0.117 3.883 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.252 0.748 36 H 0.020 0.980 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.784 4.605 -9.459 13.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C 0.046 3.954 4 H 0.118 0.882 5 F -0.174 7.174 6 C 0.292 3.708 7 O -0.405 6.405 8 N -0.331 5.331 9 C -0.017 4.017 10 C -0.128 4.128 11 H 0.110 0.890 12 C 0.018 3.982 13 N -0.328 5.328 14 C -0.356 4.356 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.045 3.955 23 C -0.142 4.142 24 H 0.114 0.886 25 C -0.005 4.005 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.401 3.996 -9.750 12.877 hybrid contribution -0.083 -0.199 0.914 0.939 sum -7.484 3.797 -8.837 12.186 Atomic orbital electron populations 1.21767 0.94199 1.02563 1.02392 1.21987 0.97176 0.93575 1.05181 1.21643 0.92106 0.96332 0.85356 0.88180 1.92852 1.92090 1.84003 1.48458 1.20519 0.90019 0.80245 0.79978 1.90708 1.66151 1.39267 1.44339 1.48262 1.08571 1.36422 1.39884 1.22121 0.95982 0.90924 0.92685 1.22739 0.94936 0.98603 0.96557 0.88972 1.21153 0.95535 0.91911 0.89567 1.44261 1.53385 1.29188 1.05992 1.19092 1.24209 1.08648 0.83625 0.90319 1.24805 0.99654 0.97824 0.98160 1.69879 1.34017 1.20469 1.32500 0.86017 0.77326 0.78202 0.84047 1.20483 1.21748 1.21673 1.21483 0.99103 0.90294 0.84635 1.23338 0.97419 0.97899 0.95560 0.88552 1.21913 0.80059 1.01751 0.96814 0.92241 0.92086 0.91736 0.89550 0.89505 0.90571 0.91690 0.95600 0.95729 0.93684 0.96232 0.88859 0.92136 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.83 37.16 0.37 -1.10 16 2 C -0.14 -1.72 5.41 -26.73 -0.14 -1.87 16 3 C 0.08 1.15 3.53 -27.89 -0.10 1.05 16 4 H 0.10 1.15 6.65 -51.93 -0.35 0.80 16 5 F -0.19 -2.75 16.75 2.25 0.04 -2.71 16 6 C 0.51 8.56 7.18 -10.98 -0.08 8.49 16 7 O -0.53 -10.59 16.89 5.56 0.09 -10.50 16 8 N -0.60 -9.78 3.30 -172.37 -0.57 -10.35 16 9 C 0.11 1.52 5.30 -3.61 -0.02 1.50 16 10 C -0.11 -1.68 4.02 -88.60 -0.36 -2.04 16 11 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 12 C 0.14 2.73 6.62 -3.57 -0.02 2.71 16 13 N -0.60 -14.56 3.38 -171.84 -0.58 -15.14 16 14 C -0.23 -6.10 10.25 -15.06 -0.15 -6.26 16 15 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 16 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 17 N -0.92 -26.38 10.16 55.49 0.56 -25.81 16 18 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.17 3.92 4.92 -3.39 -0.02 3.90 16 23 C -0.12 -2.13 4.17 -88.34 -0.37 -2.50 16 24 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 25 C 0.12 1.95 6.00 -3.41 -0.02 1.93 16 26 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 30 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.08 1.15 6.95 -51.93 -0.36 0.79 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.45 7.44 -51.93 -0.39 0.07 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.02 0.51 7.71 -51.93 -0.40 0.11 16 37 H 0.09 2.47 6.19 -51.93 -0.32 2.14 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.48 7.91 -51.93 -0.41 1.07 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -31.18 314.16 -7.74 -38.91 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.98 Total: -1.20 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.01 Total: 5.48 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.59 Total: -51.31 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.18 -7.74 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048985082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.967 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds