Wall clock time and date at job start Mon Mar 30 2020 19:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47601 * 2 1 4 4 F 1.39901 * 109.46863 * 240.00120 * 2 1 3 5 5 C 1.50699 * 109.46877 * 120.00459 * 2 1 3 6 6 O 1.21277 * 120.00308 * 350.11234 * 5 2 1 7 7 N 1.34772 * 120.00072 * 170.39646 * 5 2 1 8 8 C 1.47404 * 125.58863 * 4.78845 * 7 5 2 9 9 C 1.54859 * 104.81017 * 204.60958 * 8 7 5 10 10 C 1.55117 * 101.77732 * 322.81343 * 9 8 7 11 11 H 1.09005 * 113.46063 * 159.24501 * 10 9 8 12 12 C 1.54038 * 108.26170 * 286.09261 * 10 9 8 13 13 N 1.46697 * 106.83297 * 135.80772 * 12 10 9 14 14 C 1.36939 * 125.32470 * 161.79833 * 13 12 10 15 15 H 1.08004 * 120.00064 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99845 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00443 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99737 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47109 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47066 * 120.00142 * 18 16 14 21 21 H 1.48500 * 109.47063 * 240.00028 * 18 16 14 22 22 C 1.46641 * 109.35513 * 341.82044 * 13 12 10 23 23 C 1.46736 * 125.59132 * 184.48225 * 7 5 2 24 24 H 1.08996 * 111.32616 * 56.12467 * 23 7 5 25 25 H 1.09007 * 109.46965 * 304.94595 * 1 2 3 26 26 H 1.08998 * 109.46937 * 64.93710 * 1 2 3 27 27 H 1.08995 * 109.47689 * 184.94291 * 1 2 3 28 28 H 1.08999 * 109.47349 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47007 * 300.00401 * 3 2 1 30 30 H 1.09003 * 109.47191 * 59.99896 * 3 2 1 31 31 H 1.09006 * 110.36976 * 323.44121 * 8 7 5 32 32 H 1.08996 * 110.37275 * 85.77583 * 8 7 5 33 33 H 1.09001 * 110.96752 * 80.93905 * 9 8 7 34 34 H 1.09001 * 110.96222 * 204.65449 * 9 8 7 35 35 H 1.09008 * 109.99087 * 255.15205 * 12 10 9 36 36 H 1.08999 * 109.98800 * 16.42021 * 12 10 9 37 37 H 0.97007 * 120.00700 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.75535 * 120.92718 * 22 13 12 39 39 H 1.08992 * 109.75489 * 241.63157 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7105 1.2304 6 8 1.2589 -1.0127 2.1144 7 7 3.3419 -1.0050 1.3511 8 6 4.4016 -0.6047 0.4080 9 6 5.5238 -1.6535 0.6050 10 6 5.4639 -1.8975 2.1357 11 1 5.9122 -2.8426 2.4424 12 6 6.0727 -0.6725 2.8439 13 7 5.1851 -0.3453 3.9651 14 6 5.5227 0.4300 5.0422 15 1 6.5129 0.8556 5.1120 16 6 4.5920 0.6696 6.0438 17 7 3.3853 0.1513 5.9586 18 14 5.0525 1.7278 7.5128 19 1 6.4573 2.1874 7.3708 20 1 4.1507 2.9059 7.5762 21 1 4.9151 0.9316 8.7588 22 6 3.8797 -0.9787 3.7523 23 6 3.9475 -1.7714 2.4461 24 1 3.4814 -2.7513 2.5492 25 1 -0.3633 0.5887 0.8424 26 1 -0.3633 0.4353 -0.9309 27 1 -0.3634 -1.0238 0.0885 28 1 3.1301 1.4423 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 4.0295 -0.6350 -0.6161 32 1 4.7680 0.3929 0.6501 33 1 5.3034 -2.5686 0.0553 34 1 6.4922 -1.2483 0.3116 35 1 7.0688 -0.9136 3.2154 36 1 6.1267 0.1687 2.1528 37 1 2.7349 0.3185 6.6587 38 1 3.6562 -1.6496 4.5817 39 1 3.1068 -0.2138 3.6786 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075481209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:48:54 Heat of formation + Delta-G solvation = -48.916394 kcal Electronic energy + Delta-G solvation = -22466.711413 eV Core-core repulsion = 19131.688865 eV Total energy + Delta-G solvation = -3335.022548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.89021 -40.15956 -38.00105 -34.80664 -33.50580 -32.11558 -30.87880 -28.89309 -27.41497 -26.48570 -24.68538 -23.91967 -21.79912 -20.57201 -19.62311 -18.72668 -17.36519 -16.69374 -16.19842 -15.74372 -15.26414 -14.85088 -14.59407 -13.92524 -13.78804 -13.54445 -13.28551 -12.93077 -12.66349 -12.40750 -12.36403 -12.11063 -12.08373 -11.91006 -11.74210 -11.48881 -11.13766 -11.01728 -10.86758 -10.68758 -10.45784 -10.21358 -10.12882 -9.85332 -9.68432 -9.32827 -8.57251 -8.18595 -6.79222 -5.65928 -3.02013 2.80981 3.18494 3.41278 3.46096 3.49315 4.33063 4.46682 4.50893 4.63298 4.79583 4.82548 5.01965 5.17405 5.45453 5.48310 5.50531 5.57826 5.64355 5.67022 5.75236 5.79616 5.88903 5.91669 6.03143 6.05005 6.11377 6.24459 6.32604 6.48021 6.56995 6.64537 6.86928 7.55959 7.67384 7.88441 7.94203 8.30663 8.42603 9.25388 9.86540 10.50083 11.43864 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.006698 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.444163 B = 4179.639389 C = 4868.158415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.106 3.894 3 C -0.174 4.174 4 F -0.199 7.199 5 C 0.511 3.489 6 O -0.514 6.514 7 N -0.593 5.593 8 C 0.091 3.909 9 C -0.123 4.123 10 C -0.110 4.110 11 H 0.099 0.901 12 C 0.142 3.858 13 N -0.603 5.603 14 C -0.233 4.233 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.915 5.915 18 Si 0.911 3.089 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.176 3.824 23 C 0.114 3.886 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.018 0.982 37 H 0.252 0.748 38 H 0.052 0.948 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 -1.291 -15.072 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.085 3.915 3 C -0.232 4.232 4 F -0.179 7.179 5 C 0.297 3.703 6 O -0.389 6.389 7 N -0.326 5.326 8 C -0.032 4.032 9 C -0.162 4.162 10 C -0.130 4.130 11 H 0.117 0.883 12 C 0.016 3.984 13 N -0.329 5.329 14 C -0.361 4.361 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.562 5.562 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.051 3.949 23 C 0.010 3.990 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.035 0.965 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.714 -1.372 -14.420 14.503 hybrid contribution 0.289 0.561 0.732 0.967 sum -0.425 -0.811 -13.688 13.718 Atomic orbital electron populations 1.22141 0.91043 1.04553 1.03543 1.21185 0.96575 0.93091 0.80685 1.22427 1.03247 0.93087 1.04412 1.92831 1.90102 1.82877 1.52118 1.20270 0.81466 0.80273 0.88334 1.90767 1.54804 1.52384 1.40974 1.48346 1.05651 1.53587 1.25016 1.22575 0.88226 0.98749 0.93674 1.22749 0.98388 0.98765 0.96265 1.23155 0.95021 1.00409 0.94433 0.88323 1.21304 0.94114 0.92844 0.90188 1.44240 1.09068 1.58729 1.20887 1.19054 0.97574 1.23007 0.96478 0.90396 1.24844 0.96013 1.00663 0.98850 1.70005 1.04197 1.47913 1.34050 0.86068 0.77415 0.79711 0.82691 1.20532 1.21819 1.21727 1.21130 0.88350 0.95403 0.90065 1.22561 0.92055 0.95122 0.89228 0.90407 0.89706 0.90989 0.90860 0.90593 0.90427 0.89781 0.89946 0.91083 0.90994 0.89912 0.94730 0.96452 0.93719 0.92956 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.23 37.16 0.31 -1.66 16 2 C 0.11 1.53 1.23 -91.77 -0.11 1.42 16 3 C -0.17 -2.17 8.81 37.15 0.33 -1.84 16 4 F -0.20 -2.78 14.69 2.25 0.03 -2.75 16 5 C 0.51 9.61 6.49 -10.99 -0.07 9.54 16 6 O -0.51 -11.61 15.69 5.56 0.09 -11.52 16 7 N -0.59 -10.76 2.99 -162.72 -0.49 -11.25 16 8 C 0.09 1.31 4.86 -2.57 -0.01 1.29 16 9 C -0.12 -1.60 6.35 -24.63 -0.16 -1.75 16 10 C -0.11 -1.85 4.35 -87.74 -0.38 -2.23 16 11 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 12 C 0.14 2.85 6.45 -3.39 -0.02 2.83 16 13 N -0.60 -15.53 3.38 -172.36 -0.58 -16.11 16 14 C -0.23 -6.56 10.25 -15.06 -0.15 -6.72 16 15 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 16 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 17 N -0.91 -27.89 10.24 55.49 0.57 -27.32 16 18 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 C 0.18 4.49 4.87 -3.99 -0.02 4.47 16 23 C 0.11 2.27 3.58 -66.61 -0.24 2.03 16 24 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 25 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 28 H 0.08 0.95 5.93 -51.93 -0.31 0.64 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.05 6.00 -51.93 -0.31 0.74 16 32 H 0.07 1.06 6.49 -51.93 -0.34 0.72 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.03 0.68 8.14 -51.92 -0.42 0.25 16 36 H 0.02 0.35 6.52 -51.93 -0.34 0.01 16 37 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.05 1.51 7.33 -51.93 -0.38 1.13 16 39 H 0.06 1.63 6.51 -51.93 -0.34 1.30 16 LS Contribution 305.02 15.07 4.60 4.60 Total: -1.00 -33.19 305.02 -7.22 -40.41 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.78 Total: -0.62 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -0.63 Total: 7.10 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.50 Total: -54.68 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.03 Total: -2.75 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.19 -7.22 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075481209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.504 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds