Wall clock time and date at job start Mon Mar 30 2020 19:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00265 * 2 1 4 4 H 1.48508 * 109.47005 * 270.00136 * 3 2 1 5 5 H 1.48499 * 109.47142 * 29.99657 * 3 2 1 6 6 H 1.48497 * 109.47097 * 149.99938 * 3 2 1 7 7 C 1.37878 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00237 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99747 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99881 * 170.00484 * 10 9 7 12 12 C 1.53241 * 109.34139 * 187.25350 * 11 10 9 13 13 N 1.47083 * 108.51934 * 306.17045 * 12 11 10 14 14 C 1.34774 * 120.87670 * 231.18507 * 13 12 11 15 15 O 1.21277 * 120.00187 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99787 * 180.02562 * 14 13 12 17 17 C 1.53786 * 113.61613 * 180.02562 * 16 14 13 18 18 C 1.53781 * 87.17350 * 89.15662 * 17 16 14 19 19 F 1.39895 * 113.61535 * 139.93941 * 18 17 16 20 20 C 1.53782 * 87.08260 * 25.39213 * 18 17 16 21 21 C 1.47077 * 118.23930 * 51.45723 * 13 12 11 22 22 C 1.46897 * 111.00267 * 294.30205 * 10 9 7 23 23 H 0.97002 * 120.00148 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46935 * 60.00240 * 9 7 2 25 25 H 1.08999 * 109.47033 * 300.00461 * 9 7 2 26 26 H 1.09000 * 109.49296 * 67.29644 * 11 10 9 27 27 H 1.08999 * 109.48772 * 307.20986 * 11 10 9 28 28 H 1.08991 * 109.63000 * 186.45798 * 12 11 10 29 29 H 1.09006 * 109.62874 * 65.87693 * 12 11 10 30 30 H 1.09000 * 112.91063 * 48.74933 * 16 14 13 31 31 H 1.09002 * 113.61357 * 334.56579 * 17 16 14 32 32 H 1.09002 * 113.61608 * 203.74741 * 17 16 14 33 33 H 1.08996 * 113.61580 * 270.76247 * 18 17 16 34 34 H 1.08997 * 113.61668 * 89.11298 * 20 18 17 35 35 H 1.08998 * 113.61674 * 219.93807 * 20 18 17 36 36 H 1.08995 * 109.63129 * 68.25211 * 21 13 12 37 37 H 1.09005 * 109.62804 * 188.83354 * 21 13 12 38 38 H 1.09004 * 109.49775 * 292.70691 * 22 10 9 39 39 H 1.09007 * 109.49270 * 52.76361 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0010 -2.5791 0.0001 11 6 5.4499 -2.6253 -0.2385 12 6 5.8895 -4.0831 -0.4112 13 7 5.4262 -4.8519 0.7540 14 6 6.2766 -5.6316 1.4507 15 8 7.4407 -5.7065 1.1192 16 6 5.7805 -6.4113 2.6411 17 6 6.8721 -7.2499 3.3266 18 6 7.1688 -6.0154 4.1943 19 9 7.4338 -6.3220 5.5332 20 6 5.7156 -5.5831 3.9373 21 6 4.0092 -4.7520 1.1349 22 6 3.6449 -3.2633 1.2502 23 1 -0.4850 0.8400 -0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8745 -0.6808 -0.8905 26 1 5.9726 -2.1860 0.6111 27 1 5.6877 -2.0642 -1.1423 28 1 6.9765 -4.1327 -0.4740 29 1 5.4483 -4.4935 -1.3196 30 1 4.8675 -6.9691 2.4324 31 1 7.6924 -7.5250 2.6635 32 1 6.4821 -8.0969 3.8912 33 1 7.9089 -5.3437 3.7594 34 1 5.0080 -5.9738 4.6685 35 1 5.6019 -4.5122 3.7686 36 1 3.3908 -5.2254 0.3724 37 1 3.8525 -5.2441 2.0949 38 1 4.1928 -2.8151 2.0791 39 1 2.5737 -3.1645 1.4265 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142575321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:50:57 Heat of formation + Delta-G solvation = -52.429473 kcal Electronic energy + Delta-G solvation = -21298.470016 eV Core-core repulsion = 17963.295129 eV Total energy + Delta-G solvation = -3335.174887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.71976 -40.64898 -38.23816 -36.77825 -34.57603 -32.46117 -31.00193 -28.91133 -26.72666 -26.14576 -25.22441 -23.39187 -22.21661 -21.10644 -20.06474 -18.28909 -17.59777 -16.90130 -16.44041 -16.22732 -15.63780 -15.29681 -14.83088 -14.70425 -14.60556 -14.11274 -13.88657 -13.66287 -13.11829 -12.84592 -12.65900 -12.47811 -12.31479 -12.15974 -11.76714 -11.58441 -11.23946 -11.16194 -10.86073 -10.64915 -10.63483 -10.55259 -10.39526 -9.97156 -9.76396 -9.40460 -8.65834 -8.61276 -7.54264 -6.14089 -4.12412 2.48671 2.93286 3.22401 3.30459 3.31748 3.99327 4.06732 4.24160 4.31768 4.34269 4.55102 4.60882 4.78641 5.15169 5.17556 5.25682 5.28671 5.30957 5.40677 5.44745 5.50565 5.58633 5.63619 5.69070 5.69819 5.89668 6.03317 6.09455 6.28160 6.34964 6.51248 6.73546 6.85242 7.39177 7.46756 7.74284 7.88049 8.10435 8.53818 8.92581 9.47349 10.98673 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.004275 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.652154 B = 6547.819955 C = 6856.678337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.162 3.838 10 N -0.526 5.526 11 C 0.038 3.962 12 C 0.118 3.882 13 N -0.603 5.603 14 C 0.530 3.470 15 O -0.548 6.548 16 C -0.136 4.136 17 C -0.139 4.139 18 C 0.065 3.935 19 F -0.209 7.209 20 C -0.145 4.145 21 C 0.108 3.892 22 C 0.050 3.950 23 H 0.264 0.736 24 H -0.011 1.011 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.026 0.974 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.125 -11.973 5.733 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.551 4.551 8 H 0.100 0.900 9 C 0.036 3.964 10 N -0.251 5.251 11 C -0.091 4.091 12 C -0.005 4.005 13 N -0.336 5.336 14 C 0.317 3.683 15 O -0.427 6.427 16 C -0.158 4.158 17 C -0.177 4.177 18 C 0.029 3.971 19 F -0.190 7.190 20 C -0.183 4.183 21 C -0.015 4.015 22 C -0.079 4.079 23 H 0.074 0.926 24 H 0.007 0.993 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.044 0.956 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.347 -12.122 5.196 17.398 hybrid contribution 0.565 1.501 0.630 1.724 sum 11.913 -10.621 5.826 16.990 Atomic orbital electron populations 1.69882 1.06120 1.26972 1.50687 1.24885 0.94722 0.98856 0.94692 0.86879 0.80261 0.84046 0.78663 1.20077 1.21139 1.19360 1.20992 0.88544 0.94746 1.50834 0.90049 1.20182 0.97202 0.83724 0.95244 1.61896 1.10095 1.19319 1.33788 1.22462 0.90369 0.95346 1.00946 1.21762 1.00239 0.90841 0.87631 1.48199 1.10280 1.44979 1.30125 1.19990 0.85534 0.79333 0.83415 1.90665 1.17371 1.65129 1.69524 1.22237 1.01450 0.98757 0.93320 1.23456 0.99065 0.96951 0.98245 1.23207 0.97767 0.98931 0.77238 1.92789 1.95430 1.94192 1.36568 1.23606 0.97055 1.01661 0.96022 1.22158 0.80213 0.98263 1.00860 1.22453 1.03094 0.91568 0.90812 0.92558 0.99339 0.95598 0.95480 0.89964 0.89282 0.90657 0.86921 0.88841 0.88183 0.87059 0.87571 0.89673 0.90238 0.89844 0.95614 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 20.78 27.47 -169.99 -4.67 16.11 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.51 -13.76 8.96 -34.44 -0.31 -14.07 16 8 H 0.08 2.35 7.37 -52.49 -0.39 1.97 16 9 C 0.16 3.72 3.79 -4.98 -0.02 3.70 16 10 N -0.53 -10.10 4.62 -235.45 -1.09 -11.19 16 11 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 12 C 0.12 1.67 6.60 -3.60 -0.02 1.65 16 13 N -0.60 -8.22 3.00 -172.18 -0.52 -8.74 16 14 C 0.53 7.05 6.97 -10.99 -0.08 6.97 16 15 O -0.55 -8.82 15.22 5.56 0.08 -8.74 16 16 C -0.14 -1.35 2.93 -90.86 -0.27 -1.62 16 17 C -0.14 -1.32 7.34 -25.92 -0.19 -1.51 16 18 C 0.06 0.68 5.32 -25.92 -0.14 0.54 16 19 F -0.21 -2.51 17.41 2.25 0.04 -2.47 16 20 C -0.15 -1.37 7.06 -25.82 -0.18 -1.56 16 21 C 0.11 1.40 6.49 -3.36 -0.02 1.38 16 22 C 0.05 0.84 5.47 -3.46 -0.02 0.82 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H -0.01 -0.26 7.18 -51.92 -0.37 -0.63 16 25 H 0.03 0.60 7.40 -51.93 -0.38 0.21 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.26 7.99 -51.93 -0.41 0.85 16 28 H 0.09 1.25 7.06 -51.93 -0.37 0.88 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.11 0.90 7.53 -51.93 -0.39 0.51 16 31 H 0.09 0.99 7.43 -51.93 -0.39 0.60 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.11 1.25 8.08 -51.93 -0.42 0.83 16 34 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.88 8.10 -51.93 -0.42 0.45 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.85 5.67 -51.93 -0.29 0.55 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 1.94 6.67 -51.93 -0.35 1.59 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -30.74 312.10 -7.92 -38.66 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.89 Total: -1.38 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.36 Total: -1.24 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.83 Total: -45.65 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.74 -7.92 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142575321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.765 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds