Wall clock time and date at job start Mon Mar 30 2020 19:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46831 * 2 1 4 4 C 1.52996 * 109.47010 * 240.00100 * 2 1 3 5 5 N 1.46500 * 109.46779 * 184.99524 * 4 2 1 6 6 C 1.46511 * 119.99632 * 90.00189 * 5 4 2 7 7 C 1.36935 * 120.00496 * 269.99703 * 5 4 2 8 8 H 1.08005 * 119.99939 * 142.14050 * 7 5 4 9 9 C 1.38806 * 119.99957 * 322.14092 * 7 5 4 10 10 N 1.31620 * 120.00030 * 156.01920 * 9 7 5 11 11 Si 1.86797 * 120.00136 * 336.02465 * 9 7 5 12 12 H 1.48507 * 109.47040 * 95.18922 * 11 9 7 13 13 H 1.48500 * 109.47148 * 215.18570 * 11 9 7 14 14 H 1.48498 * 109.47231 * 335.19102 * 11 9 7 15 15 N 1.46498 * 109.46893 * 119.99799 * 2 1 3 16 16 C 1.34774 * 120.00257 * 274.99860 * 15 2 1 17 17 O 1.21288 * 120.00081 * 0.02562 * 16 15 2 18 18 C 1.50692 * 120.00443 * 180.02562 * 16 15 2 19 19 H 1.09008 * 110.48876 * 42.70289 * 18 16 15 20 20 C 1.54108 * 110.54851 * 280.00196 * 18 16 15 21 21 N 1.47046 * 103.86423 * 241.40084 * 20 18 16 22 22 C 1.33952 * 109.18021 * 0.02562 * 21 20 18 23 23 O 1.21583 * 123.04515 * 179.97438 * 22 21 20 24 24 N 1.33947 * 113.91462 * 0.02562 * 22 21 20 25 25 H 1.09006 * 109.47587 * 59.99990 * 1 2 3 26 26 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47515 * 299.99936 * 1 2 3 28 28 H 1.09000 * 109.47317 * 65.00036 * 4 2 1 29 29 H 1.08994 * 109.47191 * 304.99738 * 4 2 1 30 30 H 1.09002 * 109.47252 * 95.52713 * 6 5 4 31 31 H 1.09000 * 109.47085 * 335.52956 * 6 5 4 32 32 H 1.09004 * 109.46608 * 215.52717 * 6 5 4 33 33 H 0.97002 * 120.00353 * 180.02562 * 10 9 7 34 34 H 0.97000 * 120.00232 * 95.00606 * 15 2 1 35 35 H 1.08993 * 110.54723 * 359.97438 * 20 18 16 36 36 H 1.09011 * 110.54533 * 122.80833 * 20 18 16 37 37 H 0.96996 * 125.41529 * 179.97438 * 21 20 18 38 38 H 0.97005 * 125.41052 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8262 -1.1906 6 6 4.1258 -1.9919 -0.5611 7 6 4.2798 0.1650 -1.7240 8 1 5.1937 0.4585 -1.2289 9 6 3.8958 0.7924 -2.9011 10 7 4.3308 2.0045 -3.1730 11 14 2.7616 -0.0835 -4.0994 12 1 1.3579 0.3281 -3.8432 13 1 3.1372 0.2770 -5.4901 14 1 2.8879 -1.5519 -3.9173 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8582 1.1585 2.4117 18 6 2.6498 -0.7284 3.5875 19 1 3.4893 -1.3772 3.3372 20 6 1.5164 -1.5396 4.2450 21 7 1.3830 -0.9398 5.5809 22 6 2.2728 0.0534 5.7082 23 8 2.3796 0.7225 6.7177 24 7 3.0336 0.2433 4.6223 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.7516 -0.1583 -2.1370 29 1 1.6054 -1.7197 -1.2951 30 1 4.3718 -2.7292 -1.3254 31 1 3.4348 -2.4311 0.1583 32 1 5.0365 -1.6825 -0.0482 33 1 4.0621 2.4431 -3.9954 34 1 2.2490 -1.6317 1.1527 35 1 0.5899 -1.4283 3.6818 36 1 1.7941 -2.5908 4.3235 37 1 0.7507 -1.2184 6.2616 38 1 3.7285 0.9143 4.5332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324337.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:51:30 Heat of formation + Delta-G solvation = -19.543849 kcal Electronic energy + Delta-G solvation = -21640.701271 eV Core-core repulsion = 18326.872374 eV Total energy + Delta-G solvation = -3313.828897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.35704 -39.24009 -36.88202 -36.13790 -34.17164 -33.10367 -31.65608 -31.19798 -28.92096 -26.77587 -25.76121 -24.23784 -21.91428 -21.77508 -20.89781 -20.21938 -18.11496 -17.66183 -16.91387 -16.40254 -15.82684 -15.61032 -15.14034 -14.81357 -14.62674 -14.20485 -14.01073 -13.63172 -13.39815 -13.04816 -13.03666 -12.72135 -12.62332 -12.08670 -11.97688 -11.67198 -11.42063 -10.93798 -10.63996 -10.41080 -10.35577 -10.26017 -9.99122 -9.69649 -9.52149 -8.93007 -8.79348 -8.55298 -6.92861 -6.07891 -3.49828 2.51508 2.78063 2.97106 3.21149 3.32975 3.40385 3.43535 3.89147 4.10443 4.42908 4.59163 4.69870 4.86901 4.99341 5.22038 5.27847 5.43275 5.47182 5.66541 5.75623 5.90970 5.93571 6.09925 6.26617 6.37248 6.47038 6.55366 6.71765 6.83422 6.87760 7.02992 7.23438 7.73342 7.94879 8.29254 8.40516 8.52012 8.87121 9.60962 9.99208 11.07564 Molecular weight = 270.15amu Principal moments of inertia in cm(-1) A = 0.031382 B = 0.004871 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.009497 B = 5747.253975 C = 5866.125807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.121 3.879 3 H 0.095 0.905 4 C 0.130 3.870 5 N -0.607 5.607 6 C 0.127 3.873 7 C -0.273 4.273 8 H 0.077 0.923 9 C 0.038 3.962 10 N -0.893 5.893 11 Si 0.873 3.127 12 H -0.284 1.284 13 H -0.299 1.299 14 H -0.270 1.270 15 N -0.700 5.700 16 C 0.499 3.501 17 O -0.525 6.525 18 C 0.101 3.899 19 H 0.116 0.884 20 C 0.105 3.895 21 N -0.741 5.741 22 C 0.706 3.294 23 O -0.588 6.588 24 N -0.711 5.711 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.011 0.989 31 H 0.025 0.975 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.394 0.606 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.431 0.569 38 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.125 -12.491 10.561 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 H 0.114 0.886 4 C 0.004 3.996 5 N -0.331 5.331 6 C -0.018 4.018 7 C -0.402 4.402 8 H 0.095 0.905 9 C -0.163 4.163 10 N -0.533 5.533 11 Si 0.703 3.297 12 H -0.212 1.212 13 H -0.227 1.227 14 H -0.194 1.194 15 N -0.352 5.352 16 C 0.282 3.718 17 O -0.400 6.400 18 C -0.009 4.009 19 H 0.134 0.866 20 C -0.021 4.021 21 N -0.404 5.404 22 C 0.405 3.595 23 O -0.466 6.466 24 N -0.373 5.373 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.230 0.770 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.272 0.728 38 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -7.216 -11.162 10.963 17.229 hybrid contribution -0.477 -0.720 -0.879 1.232 sum -7.693 -11.881 10.083 17.379 Atomic orbital electron populations 1.22153 0.96396 1.01257 1.02199 1.21826 0.92156 0.99596 0.85025 0.88645 1.21535 0.85316 0.97554 0.95230 1.43964 1.00025 1.20830 1.68287 1.21124 0.96341 0.89293 0.95051 1.18715 1.07102 1.10716 1.03633 0.90508 1.25479 0.97830 0.95859 0.97156 1.69899 1.46623 1.11177 1.25610 0.86999 0.80052 0.81333 0.81330 1.21219 1.22693 1.19436 1.46024 1.66182 1.13651 1.09303 1.20550 0.78952 0.87799 0.84511 1.90752 1.49117 1.15516 1.84618 1.21895 0.98815 0.91192 0.89032 0.86641 1.22255 0.98292 0.97659 0.83858 1.45031 1.40679 1.37440 1.17245 1.15857 0.79472 0.80688 0.83498 1.90990 1.73051 1.51703 1.30889 1.44821 1.40531 1.38745 1.13223 0.91743 0.93016 0.92674 0.91316 0.93755 0.97129 0.95617 0.94220 0.92577 0.77036 0.89567 0.88770 0.72768 0.72168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.48 37.16 0.35 -1.96 16 2 C 0.12 2.07 2.88 -67.93 -0.20 1.87 16 3 H 0.10 2.09 7.58 -51.93 -0.39 1.69 16 4 C 0.13 2.46 4.14 -4.04 -0.02 2.44 16 5 N -0.61 -12.91 2.32 -181.11 -0.42 -13.33 16 6 C 0.13 2.13 10.23 59.85 0.61 2.74 16 7 C -0.27 -7.23 9.92 -15.06 -0.15 -7.38 16 8 H 0.08 2.24 8.06 -52.48 -0.42 1.82 16 9 C 0.04 1.05 5.27 -17.43 -0.09 0.96 16 10 N -0.89 -26.55 13.97 55.49 0.78 -25.77 16 11 Si 0.87 20.91 25.19 -169.99 -4.28 16.63 16 12 H -0.28 -6.52 6.64 56.52 0.38 -6.15 16 13 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 N -0.70 -9.56 4.52 -53.81 -0.24 -9.80 16 16 C 0.50 7.21 6.92 -10.99 -0.08 7.14 16 17 O -0.52 -10.22 16.22 5.55 0.09 -10.13 16 18 C 0.10 1.04 4.18 -68.21 -0.28 0.75 16 19 H 0.12 0.87 8.14 -51.92 -0.42 0.44 16 20 C 0.11 0.78 7.70 -3.17 -0.02 0.76 16 21 N -0.74 -7.21 6.37 -64.70 -0.41 -7.62 16 22 C 0.71 9.96 8.92 -88.39 -0.79 9.18 16 23 O -0.59 -10.75 18.05 5.29 0.10 -10.66 16 24 N -0.71 -9.08 5.60 -59.33 -0.33 -9.41 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.48 3.43 -51.93 -0.18 1.30 16 29 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.03 0.32 5.77 -51.93 -0.30 0.02 16 32 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.39 4.22 6.21 -40.82 -0.25 3.96 16 35 H 0.09 0.62 7.72 -51.93 -0.40 0.22 16 36 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.43 3.24 8.96 -40.82 -0.37 2.87 16 38 H 0.44 5.57 8.96 -40.82 -0.37 5.20 16 LS Contribution 312.75 15.07 4.71 4.71 Total: -1.00 -36.00 312.75 -5.90 -41.89 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.22 Total: 6.97 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: -0.66 Total: 16.50 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.63 Total: -65.93 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.19 Total: -20.79 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.28 Total: 16.63 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -36.00 -5.90 -41.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324337.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.350 kcal (2) G-P(sol) polarization free energy of solvation -35.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds