Wall clock time and date at job start Mon Mar 30 2020 19:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.32965 * 2 1 4 4 C 1.54474 * 110.37512 * 237.62644 * 2 1 3 5 5 C 1.54506 * 104.06254 * 217.19145 * 4 2 1 6 6 C 1.54479 * 104.06648 * 0.02562 * 5 4 2 7 7 H 1.09001 * 110.46432 * 265.10484 * 6 5 4 8 8 C 1.52994 * 110.37363 * 142.81086 * 6 5 4 9 9 O 1.45202 * 109.46919 * 178.17112 * 8 6 5 10 10 C 1.34230 * 116.99836 * 180.02562 * 9 8 6 11 11 O 1.20833 * 119.99930 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.00262 * 180.27336 * 10 9 8 13 13 C 1.52996 * 109.47491 * 179.72204 * 12 10 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47298 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47156 * 180.02562 * 15 14 13 17 17 H 1.07991 * 119.99776 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99589 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99813 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00498 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47152 * 90.00133 * 20 18 16 22 22 H 1.48502 * 109.47002 * 210.00075 * 20 18 16 23 23 H 1.48504 * 109.47004 * 329.99977 * 20 18 16 24 24 O 1.44423 * 110.37044 * 122.24412 * 2 1 3 25 25 H 1.08999 * 109.47620 * 299.20314 * 1 2 3 26 26 H 1.08998 * 109.46718 * 59.20585 * 1 2 3 27 27 H 1.09007 * 109.47181 * 179.20163 * 1 2 3 28 28 H 1.08998 * 110.51433 * 335.83819 * 4 2 1 29 29 H 1.08999 * 110.50970 * 98.54596 * 4 2 1 30 30 H 1.09005 * 110.51070 * 241.35802 * 5 4 2 31 31 H 1.08997 * 110.50987 * 118.64787 * 5 4 2 32 32 H 1.08998 * 109.47242 * 58.16541 * 8 6 5 33 33 H 1.09004 * 109.46797 * 298.16357 * 8 6 5 34 34 H 1.09004 * 109.46801 * 299.72165 * 12 10 9 35 35 H 1.09000 * 109.47461 * 59.71633 * 12 10 9 36 36 H 1.09004 * 109.47066 * 299.99799 * 13 12 10 37 37 H 1.08994 * 109.47405 * 59.99969 * 13 12 10 38 38 H 1.08996 * 109.47187 * 300.00268 * 14 13 12 39 39 H 1.09008 * 109.46785 * 59.99617 * 14 13 12 40 40 H 1.09004 * 109.47392 * 300.00171 * 15 14 13 41 41 H 1.09008 * 109.46760 * 59.99946 * 15 14 13 42 42 H 0.96998 * 120.00580 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7754 -1.2230 5 6 3.3178 -1.5064 -0.6841 6 6 3.3870 -1.0868 0.8010 7 1 4.0522 -0.2323 0.9250 8 6 3.8597 -2.2583 1.6640 9 8 3.9591 -1.8306 3.0481 10 6 4.3643 -2.7468 3.9414 11 8 4.6269 -3.8692 3.5789 12 6 4.4854 -2.3777 5.3974 13 6 4.9557 -3.5956 6.1951 14 6 5.0792 -3.2206 7.6733 15 6 5.5489 -4.4387 8.4710 16 6 5.6699 -4.0694 9.9271 17 1 5.4357 -3.0662 10.2509 18 6 6.0806 -5.0122 10.8454 19 7 6.1868 -4.6898 12.1160 20 14 6.4878 -6.7469 10.2849 21 1 7.9275 -6.8274 9.9300 22 1 6.1943 -7.7034 11.3822 23 1 5.6653 -7.0891 9.0967 24 8 2.0327 -0.7223 1.1451 25 1 -0.3634 0.5014 0.8970 26 1 -0.3633 0.5261 -0.8828 27 1 -0.3634 -1.0276 -0.0143 28 1 1.3277 -1.4936 -1.5756 29 1 2.3430 -0.0861 -2.0213 30 1 4.2110 -1.1785 -1.2160 31 1 3.1955 -2.5860 -0.7702 32 1 4.8366 -2.5946 1.3166 33 1 3.1449 -3.0776 1.5874 34 1 5.2083 -1.5694 5.5084 35 1 3.5150 -2.0510 5.7714 36 1 4.2327 -4.4038 6.0841 37 1 5.9260 -3.9222 5.8212 38 1 5.8022 -2.4125 7.7839 39 1 4.1089 -2.8936 8.0474 40 1 4.8254 -5.2465 8.3603 41 1 6.5190 -4.7659 8.0968 42 1 6.4754 -5.3531 12.7623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:47:37 Heat of formation + Delta-G solvation = -164.576851 kcal Electronic energy + Delta-G solvation = -20049.605112 eV Core-core repulsion = 16800.734704 eV Total energy + Delta-G solvation = -3248.870408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.166 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.60170 -39.79601 -36.70195 -35.07322 -32.84021 -32.67323 -32.52837 -30.36582 -28.73316 -26.20342 -24.31547 -22.46389 -21.88262 -21.32558 -20.37529 -20.05681 -17.65926 -17.08800 -16.80459 -16.56329 -16.44732 -15.96490 -15.07397 -14.75738 -14.26829 -14.18584 -13.70683 -13.38011 -12.99790 -12.74937 -12.63892 -12.37487 -12.30543 -12.20373 -12.06935 -11.74614 -11.70025 -11.33401 -11.14089 -11.13115 -10.77999 -10.77223 -10.55905 -10.42643 -10.13912 -9.85864 -9.66195 -9.51536 -9.12309 -8.48882 -5.99818 -3.97424 2.27566 2.57734 3.33631 3.35506 3.42582 3.48221 4.06508 4.16750 4.41187 4.49458 4.50389 4.67762 4.76774 4.89069 4.93061 4.99637 5.02310 5.17519 5.22953 5.24785 5.29181 5.34808 5.35277 5.48506 5.56144 5.61869 5.71629 5.74432 5.98400 6.08422 6.34160 6.39623 6.48642 6.64025 6.78092 6.97512 7.37182 7.49894 7.79837 7.85260 8.58863 9.05300 9.63273 11.13642 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.046710 B = 0.002460 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.294882 B =11379.254379 C =11683.295629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 H 0.070 0.930 4 C -0.150 4.150 5 C -0.149 4.149 6 C 0.077 3.923 7 H 0.081 0.919 8 C 0.072 3.928 9 O -0.353 6.353 10 C 0.461 3.539 11 O -0.510 6.510 12 C -0.112 4.112 13 C -0.111 4.111 14 C -0.102 4.102 15 C -0.015 4.015 16 C -0.519 4.519 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 O -0.359 6.359 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.016 0.984 41 H 0.011 0.989 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 10.083 -29.513 32.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 H 0.088 0.912 4 C -0.188 4.188 5 C -0.187 4.187 6 C 0.019 3.981 7 H 0.099 0.901 8 C -0.002 4.002 9 O -0.271 6.271 10 C 0.305 3.695 11 O -0.397 6.397 12 C -0.149 4.149 13 C -0.149 4.149 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.557 4.557 17 H 0.090 0.910 18 C -0.137 4.137 19 N -0.545 5.545 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.189 1.189 24 O -0.278 6.278 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.227 9.622 -29.284 31.903 hybrid contribution 0.423 -0.990 -0.473 1.176 sum -7.804 8.633 -29.757 31.951 Atomic orbital electron populations 1.21807 0.93013 1.03022 1.02604 1.23016 0.95592 0.95546 0.84947 0.91186 1.23009 0.97462 0.99871 0.98455 1.22915 0.99180 1.02086 0.94494 1.23000 0.85750 0.96680 0.92651 0.90099 1.23068 1.01949 0.96604 0.78578 1.86564 1.78753 1.43262 1.18473 1.24204 0.72571 0.83103 0.89671 1.90661 1.46042 1.22066 1.80962 1.21577 1.05213 1.02241 0.85882 1.21603 1.01935 0.95330 0.95997 1.21475 1.01089 1.00085 0.91341 1.19581 0.95837 0.93965 0.95900 1.21174 1.45075 0.99192 0.90291 0.91036 1.25048 0.95031 0.98772 0.94809 1.69921 1.48179 1.34773 1.01593 0.86768 0.79136 0.84768 0.78580 1.20334 1.21456 1.18927 1.89256 1.26136 1.74480 1.37961 0.91601 0.91139 0.91757 0.90283 0.90302 0.89828 0.90112 0.89819 0.90442 0.87734 0.87647 0.91550 0.91579 0.92587 0.92543 0.96575 0.97026 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.52 37.16 0.35 -0.56 16 2 C 0.07 0.48 3.92 -25.96 -0.10 0.38 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.15 -0.82 6.63 -25.17 -0.17 -0.99 16 5 C -0.15 -0.90 6.63 -25.16 -0.17 -1.07 16 6 C 0.08 0.67 3.58 -25.96 -0.09 0.58 16 7 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 8 C 0.07 0.77 5.07 37.15 0.19 0.95 16 9 O -0.35 -4.65 10.22 -40.91 -0.42 -5.07 16 10 C 0.46 6.69 7.96 36.00 0.29 6.97 16 11 O -0.51 -8.75 15.73 -18.76 -0.30 -9.04 16 12 C -0.11 -1.49 5.81 -27.89 -0.16 -1.66 16 13 C -0.11 -1.85 4.50 -26.73 -0.12 -1.97 16 14 C -0.10 -2.01 5.15 -26.73 -0.14 -2.14 16 15 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 16 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 20 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.26 -6.51 6.54 56.52 0.37 -6.15 16 24 O -0.36 -3.85 11.03 -35.73 -0.39 -4.24 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.08 0.41 7.86 -51.93 -0.41 0.00 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 32 H 0.08 0.79 8.13 -51.93 -0.42 0.36 16 33 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 40 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 41 H 0.01 0.28 7.57 -51.92 -0.39 -0.11 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -33.97 345.93 -7.96 -41.92 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -7.51 Total: -5.19 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.66 Total: -13.62 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.77 Total: -27.66 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -1.11 Total: -18.35 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.97 -7.96 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.653 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds