Wall clock time and date at job start Mon Mar 30 2020 19:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47460 * 2 1 4 4 H 1.08994 * 109.47482 * 181.20377 * 3 2 1 5 5 C 1.50704 * 109.47242 * 301.20400 * 3 2 1 6 6 H 1.07999 * 119.99895 * 119.99661 * 5 3 2 7 7 C 1.37879 * 119.99887 * 299.99837 * 5 3 2 8 8 N 1.31509 * 119.99756 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99834 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47081 * 90.00069 * 9 7 5 11 11 H 1.48505 * 109.46673 * 209.99958 * 9 7 5 12 12 H 1.48503 * 109.47103 * 329.99850 * 9 7 5 13 13 N 1.46897 * 109.46883 * 61.20119 * 3 2 1 14 14 C 1.46902 * 111.00172 * 86.29757 * 13 3 2 15 15 C 1.53001 * 109.47271 * 185.33767 * 14 13 3 16 16 C 1.50695 * 109.54696 * 59.99532 * 15 14 13 17 17 N 1.34774 * 119.99811 * 300.00163 * 16 15 14 18 18 O 1.21278 * 119.99878 * 119.99791 * 16 15 14 19 19 C 1.53182 * 109.53854 * 299.81603 * 15 14 13 20 20 C 1.53109 * 109.15038 * 183.24178 * 19 15 14 21 21 O 1.42901 * 109.48487 * 57.48133 * 20 19 15 22 22 C 1.42899 * 114.09702 * 298.87863 * 21 20 19 23 23 C 1.53091 * 109.41273 * 61.16326 * 22 21 20 24 24 H 1.08997 * 109.47101 * 175.85184 * 1 2 3 25 25 H 1.08997 * 109.46871 * 295.85508 * 1 2 3 26 26 H 1.09001 * 109.46883 * 55.85955 * 1 2 3 27 27 H 1.09001 * 109.47224 * 240.00150 * 2 1 3 28 28 H 1.09000 * 109.47233 * 120.00530 * 2 1 3 29 29 H 0.97007 * 119.99573 * 180.02562 * 8 7 5 30 30 H 1.00902 * 111.00273 * 210.24781 * 13 3 2 31 31 H 1.09000 * 109.46665 * 305.33021 * 14 13 3 32 32 H 1.08998 * 109.47500 * 65.32846 * 14 13 3 33 33 H 0.96999 * 120.00327 * 359.97438 * 17 16 15 34 34 H 0.97002 * 119.99698 * 179.97438 * 17 16 15 35 35 H 1.08995 * 109.52185 * 303.06024 * 19 15 14 36 36 H 1.09002 * 109.52048 * 63.25378 * 19 15 14 37 37 H 1.08996 * 109.40835 * 297.49142 * 20 19 15 38 38 H 1.09000 * 109.48537 * 177.51174 * 20 19 15 39 39 H 1.09001 * 109.48509 * 301.18439 * 22 21 20 40 40 H 1.09005 * 109.49105 * 181.14772 * 22 21 20 41 41 H 1.08998 * 109.52462 * 182.47964 * 23 22 21 42 42 H 1.09004 * 109.57310 * 62.33145 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1298 1.4425 -0.0216 5 6 1.5136 2.1615 -1.2153 6 1 0.8948 3.0388 -1.0977 7 6 1.8218 1.6992 -2.4772 8 7 1.3619 2.3264 -3.5377 9 14 2.8925 0.1821 -2.6804 10 1 2.0336 -1.0287 -2.7171 11 1 3.6593 0.2837 -3.9481 12 1 3.8360 0.0854 -1.5376 13 7 1.5743 2.1265 1.2137 14 6 2.4968 1.8978 2.3338 15 6 1.9135 2.5113 3.6083 16 6 0.5846 1.8698 3.9142 17 7 -0.4238 1.9514 3.0238 18 8 0.4227 1.2802 4.9615 19 6 1.7218 4.0181 3.4103 20 6 1.2145 4.6358 4.7162 21 8 2.1408 4.3553 5.7675 22 6 2.3225 2.9622 6.0289 23 6 2.8763 2.2776 4.7766 24 1 -0.3633 -1.0249 -0.0743 25 1 -0.3633 0.4482 0.9248 26 1 -0.3633 0.5768 -0.8506 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.5784 2.0010 -4.4255 30 1 1.4465 3.1133 1.0462 31 1 2.6357 0.8262 2.4771 32 1 3.4579 2.3625 2.1137 33 1 -0.2944 2.4233 2.1862 34 1 -1.2791 1.5382 3.2205 35 1 2.6739 4.4739 3.1389 36 1 0.9945 4.1916 2.6171 37 1 0.2425 4.2098 4.9647 38 1 1.1182 5.7147 4.5947 39 1 1.3649 2.5143 6.2946 40 1 3.0245 2.8353 6.8530 41 1 2.9741 1.2075 4.9595 42 1 3.8529 2.6962 4.5332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:50:58 Heat of formation + Delta-G solvation = -89.197562 kcal Electronic energy + Delta-G solvation = -22746.575670 eV Core-core repulsion = 19533.266704 eV Total energy + Delta-G solvation = -3213.308966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74126 -37.83093 -36.91886 -34.53565 -33.12859 -32.13587 -31.04460 -30.83392 -27.54623 -25.81962 -23.75307 -23.19289 -22.79696 -21.97735 -19.48084 -19.05683 -17.03853 -16.80710 -16.25439 -15.95955 -15.87459 -15.27885 -14.93405 -14.44750 -14.28630 -13.92349 -13.79140 -13.30931 -13.18897 -12.89870 -12.46734 -12.44229 -12.13962 -12.11695 -11.60039 -11.26607 -11.11509 -10.78641 -10.69723 -10.55068 -10.51055 -10.29112 -10.05495 -9.61869 -9.46147 -9.27316 -9.11179 -9.06276 -8.68395 -7.77708 -6.21421 -4.21280 2.92707 3.19574 3.29186 3.30861 3.84944 3.94436 4.28712 4.49019 4.70146 4.79901 4.94578 5.12064 5.22786 5.25852 5.34508 5.54237 5.62640 5.65172 5.70116 5.84162 5.87937 5.99159 6.04952 6.06227 6.10879 6.14517 6.23172 6.35631 6.62766 6.80426 6.97017 7.09309 7.14545 7.23329 7.34357 7.45619 7.68622 7.83396 8.08321 8.42890 8.65403 8.80797 9.40864 10.90961 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029388 B = 0.005507 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.533897 B = 5082.756623 C = 5251.240626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.113 4.113 3 C 0.188 3.812 4 H 0.004 0.996 5 C -0.517 4.517 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.895 5.895 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.679 5.679 14 C 0.068 3.932 15 C -0.077 4.077 16 C 0.540 3.460 17 N -0.832 5.832 18 O -0.566 6.566 19 C -0.146 4.146 20 C 0.061 3.939 21 O -0.386 6.386 22 C 0.051 3.949 23 C -0.128 4.128 24 H 0.020 0.980 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.030 0.970 29 H 0.265 0.735 30 H 0.339 0.661 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.415 0.585 34 H 0.391 0.609 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 1.601 13.302 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C 0.079 3.921 4 H 0.021 0.979 5 C -0.555 4.555 6 H 0.097 0.903 7 C -0.127 4.127 8 N -0.532 5.532 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.312 5.312 14 C -0.063 4.063 15 C -0.081 4.081 16 C 0.324 3.676 17 N -0.397 5.397 18 O -0.447 6.447 19 C -0.184 4.184 20 C -0.016 4.016 21 O -0.305 6.305 22 C -0.025 4.025 23 C -0.167 4.167 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.158 0.842 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.251 0.749 34 H 0.220 0.780 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.007 0.933 14.032 14.063 hybrid contribution 0.947 -0.648 -1.227 1.680 sum 0.954 0.285 12.805 12.843 Atomic orbital electron populations 1.21528 0.95587 0.98552 1.02884 1.21740 0.97405 0.98101 0.97878 1.19556 0.93444 0.91308 0.87768 0.97850 1.20962 1.32816 1.13299 0.88457 0.90274 1.24867 0.95298 0.96638 0.95870 1.69875 1.44927 1.40252 0.98175 0.86879 0.80917 0.83745 0.76822 1.20409 1.22534 1.19470 1.60448 1.47475 1.16702 1.06550 1.21955 0.94332 1.00499 0.89481 1.20932 0.93826 0.96072 0.97275 1.20149 0.85690 0.78849 0.82864 1.44133 1.14331 1.58362 1.22890 1.90627 1.83334 1.44771 1.25918 1.22284 1.03703 0.93461 0.98907 1.22559 0.91914 1.00620 0.86536 1.87877 1.63937 1.24601 1.54101 1.22811 1.02178 0.81101 0.96424 1.21980 0.98123 1.02197 0.94396 0.96128 0.92592 0.91195 0.94077 0.95105 0.92496 0.84207 0.91001 0.94307 0.74903 0.77966 0.89928 0.89695 0.93444 0.88743 0.90600 0.89382 0.90246 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.53 37.16 0.35 -2.12 16 2 C -0.11 -2.33 5.29 -26.73 -0.14 -2.47 16 3 C 0.19 3.92 1.89 -68.87 -0.13 3.79 16 4 H 0.00 0.09 6.89 -51.93 -0.36 -0.27 16 5 C -0.52 -12.83 7.78 -34.44 -0.27 -13.10 16 6 H 0.08 2.10 7.84 -52.49 -0.41 1.68 16 7 C 0.08 2.03 5.45 -17.82 -0.10 1.94 16 8 N -0.89 -25.60 13.96 55.43 0.77 -24.82 16 9 Si 0.89 21.02 24.36 -169.99 -4.14 16.88 16 10 H -0.28 -6.52 6.88 56.52 0.39 -6.13 16 11 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.19 6.53 56.52 0.37 -5.82 16 13 N -0.68 -11.21 2.97 -107.95 -0.32 -11.53 16 14 C 0.07 1.01 4.41 -3.82 -0.02 0.99 16 15 C -0.08 -1.03 0.52 -155.48 -0.08 -1.11 16 16 C 0.54 7.95 5.42 -10.99 -0.06 7.89 16 17 N -0.83 -10.80 7.69 31.22 0.24 -10.56 16 18 O -0.57 -9.84 14.69 5.56 0.08 -9.75 16 19 C -0.15 -1.71 4.43 -26.58 -0.12 -1.83 16 20 C 0.06 0.72 6.61 37.21 0.25 0.96 16 21 O -0.39 -5.23 10.77 -35.23 -0.38 -5.61 16 22 C 0.05 0.66 6.55 37.20 0.24 0.90 16 23 C -0.13 -1.64 4.56 -26.59 -0.12 -1.76 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.97 6.94 -51.93 -0.36 0.61 16 26 H 0.07 1.51 7.03 -51.93 -0.37 1.14 16 27 H 0.04 0.91 3.30 -51.93 -0.17 0.74 16 28 H 0.03 0.59 7.45 -51.93 -0.39 0.20 16 29 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.34 5.44 6.47 -39.29 -0.25 5.19 16 31 H 0.07 1.15 7.40 -51.93 -0.38 0.76 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.42 5.38 5.85 -40.82 -0.24 5.14 16 34 H 0.39 4.61 8.93 -40.82 -0.36 4.25 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.94 6.25 -51.93 -0.32 0.62 16 37 H 0.05 0.58 7.38 -51.93 -0.38 0.20 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.11 5.82 -51.93 -0.30 0.81 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.04 8.02 -51.93 -0.42 0.62 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -28.91 310.14 -5.70 -34.61 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -6.44 Total: 12.02 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.19 Total: -5.91 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.69 Total: -46.91 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.30 Total: -15.36 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.88 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.91 -5.70 -34.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.583 kcal (2) G-P(sol) polarization free energy of solvation -28.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds