Wall clock time and date at job start Mon Mar 30 2020 19:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47460 * 2 1 4 4 H 1.08994 * 109.47482 * 181.20377 * 3 2 1 5 5 C 1.50704 * 109.47242 * 301.20400 * 3 2 1 6 6 H 1.07999 * 119.99895 * 119.99661 * 5 3 2 7 7 C 1.37879 * 119.99887 * 299.99837 * 5 3 2 8 8 N 1.31509 * 119.99756 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99834 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47081 * 90.00069 * 9 7 5 11 11 H 1.48505 * 109.46673 * 209.99958 * 9 7 5 12 12 H 1.48503 * 109.47103 * 329.99850 * 9 7 5 13 13 N 1.46897 * 109.46883 * 61.20119 * 3 2 1 14 14 C 1.46902 * 111.00172 * 86.29757 * 13 3 2 15 15 C 1.53001 * 109.47271 * 185.33767 * 14 13 3 16 16 C 1.50695 * 109.54696 * 59.99532 * 15 14 13 17 17 N 1.34774 * 119.99811 * 300.00163 * 16 15 14 18 18 O 1.21278 * 119.99878 * 119.99791 * 16 15 14 19 19 C 1.53182 * 109.53854 * 299.81603 * 15 14 13 20 20 C 1.53109 * 109.15038 * 183.24178 * 19 15 14 21 21 O 1.42901 * 109.48487 * 57.48133 * 20 19 15 22 22 C 1.42899 * 114.09702 * 298.87863 * 21 20 19 23 23 C 1.53091 * 109.41273 * 61.16326 * 22 21 20 24 24 H 1.08997 * 109.47101 * 175.85184 * 1 2 3 25 25 H 1.08997 * 109.46871 * 295.85508 * 1 2 3 26 26 H 1.09001 * 109.46883 * 55.85955 * 1 2 3 27 27 H 1.09001 * 109.47224 * 240.00150 * 2 1 3 28 28 H 1.09000 * 109.47233 * 120.00530 * 2 1 3 29 29 H 0.97007 * 119.99573 * 180.02562 * 8 7 5 30 30 H 1.00902 * 111.00273 * 210.24781 * 13 3 2 31 31 H 1.09000 * 109.46665 * 305.33021 * 14 13 3 32 32 H 1.08998 * 109.47500 * 65.32846 * 14 13 3 33 33 H 0.96999 * 120.00327 * 359.97438 * 17 16 15 34 34 H 0.97002 * 119.99698 * 179.97438 * 17 16 15 35 35 H 1.08995 * 109.52185 * 303.06024 * 19 15 14 36 36 H 1.09002 * 109.52048 * 63.25378 * 19 15 14 37 37 H 1.08996 * 109.40835 * 297.49142 * 20 19 15 38 38 H 1.09000 * 109.48537 * 177.51174 * 20 19 15 39 39 H 1.09001 * 109.48509 * 301.18439 * 22 21 20 40 40 H 1.09005 * 109.49105 * 181.14772 * 22 21 20 41 41 H 1.08998 * 109.52462 * 182.47964 * 23 22 21 42 42 H 1.09004 * 109.57310 * 62.33145 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1298 1.4425 -0.0216 5 6 1.5136 2.1615 -1.2153 6 1 0.8948 3.0388 -1.0977 7 6 1.8218 1.6992 -2.4772 8 7 1.3619 2.3264 -3.5377 9 14 2.8925 0.1821 -2.6804 10 1 2.0336 -1.0287 -2.7171 11 1 3.6593 0.2837 -3.9481 12 1 3.8360 0.0854 -1.5376 13 7 1.5743 2.1265 1.2137 14 6 2.4968 1.8978 2.3338 15 6 1.9135 2.5113 3.6083 16 6 0.5846 1.8698 3.9142 17 7 -0.4238 1.9514 3.0238 18 8 0.4227 1.2802 4.9615 19 6 1.7218 4.0181 3.4103 20 6 1.2145 4.6358 4.7162 21 8 2.1408 4.3553 5.7675 22 6 2.3225 2.9622 6.0289 23 6 2.8763 2.2776 4.7766 24 1 -0.3633 -1.0249 -0.0743 25 1 -0.3633 0.4482 0.9248 26 1 -0.3633 0.5768 -0.8506 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.5784 2.0010 -4.4255 30 1 1.4465 3.1133 1.0462 31 1 2.6357 0.8262 2.4771 32 1 3.4579 2.3625 2.1137 33 1 -0.2944 2.4233 2.1862 34 1 -1.2791 1.5382 3.2205 35 1 2.6739 4.4739 3.1389 36 1 0.9945 4.1916 2.6171 37 1 0.2425 4.2098 4.9647 38 1 1.1182 5.7147 4.5947 39 1 1.3649 2.5143 6.2946 40 1 3.0245 2.8353 6.8530 41 1 2.9741 1.2075 4.9595 42 1 3.8529 2.6962 4.5332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:50:57 Heat of formation + Delta-G solvation = -111.094667 kcal Electronic energy + Delta-G solvation = -22747.525200 eV Core-core repulsion = 19533.266704 eV Total energy + Delta-G solvation = -3214.258495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84322 -38.91437 -38.41967 -35.89973 -34.23716 -33.99427 -32.41253 -31.88889 -29.08700 -27.23821 -25.07985 -24.59243 -24.01303 -23.06287 -21.13858 -20.17242 -18.63992 -18.06645 -17.56675 -17.26902 -16.94343 -16.61882 -16.08762 -15.66916 -15.58765 -15.33758 -15.24844 -14.83788 -14.62472 -14.36741 -13.94152 -13.68071 -13.29698 -13.20112 -12.99730 -12.77344 -12.48094 -12.30218 -12.23846 -12.08837 -11.91039 -11.52402 -11.44130 -11.22789 -10.90879 -10.72154 -10.68427 -10.36232 -10.24010 -9.20962 -8.26873 -6.27469 1.31327 1.36209 1.43300 1.77107 2.32523 2.78139 2.97758 3.10147 3.26710 3.65692 3.74473 3.92047 4.11489 4.22736 4.29436 4.38347 4.47912 4.52539 4.57835 4.65867 4.70589 4.75650 4.78800 4.85620 4.90647 5.00371 5.09545 5.10920 5.20933 5.23496 5.37482 5.40102 5.64840 5.77599 5.97415 6.08429 6.26088 6.46585 6.64024 6.71374 6.85865 7.37976 7.54235 8.88567 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029388 B = 0.005507 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.533897 B = 5082.756623 C = 5251.240626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.116 4.116 3 C 0.194 3.806 4 H -0.004 1.004 5 C -0.500 4.500 6 H 0.055 0.945 7 C 0.025 3.975 8 N -0.942 5.942 9 Si 0.934 3.066 10 H -0.274 1.274 11 H -0.305 1.305 12 H -0.255 1.255 13 N -0.669 5.669 14 C 0.072 3.928 15 C -0.071 4.071 16 C 0.536 3.464 17 N -0.824 5.824 18 O -0.594 6.594 19 C -0.142 4.142 20 C 0.059 3.941 21 O -0.397 6.397 22 C 0.053 3.947 23 C -0.127 4.127 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.026 0.974 28 H 0.049 0.951 29 H 0.263 0.737 30 H 0.344 0.656 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.417 0.583 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.905 1.329 14.668 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.154 4.154 3 C 0.085 3.915 4 H 0.013 0.987 5 C -0.539 4.539 6 H 0.074 0.926 7 C -0.173 4.173 8 N -0.582 5.582 9 Si 0.763 3.237 10 H -0.201 1.201 11 H -0.233 1.233 12 H -0.179 1.179 13 N -0.301 5.301 14 C -0.058 4.058 15 C -0.075 4.075 16 C 0.321 3.679 17 N -0.388 5.388 18 O -0.476 6.476 19 C -0.180 4.180 20 C -0.018 4.018 21 O -0.316 6.316 22 C -0.023 4.023 23 C -0.165 4.165 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.163 0.837 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.252 0.748 34 H 0.228 0.772 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.058 0.942 38 H 0.133 0.867 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.639 0.662 15.417 15.444 hybrid contribution 0.689 -0.502 -1.582 1.797 sum 1.328 0.160 13.835 13.899 Atomic orbital electron populations 1.21451 0.94787 0.99190 1.02501 1.21732 0.98137 0.97491 0.98021 1.19343 0.92663 0.91691 0.87854 0.98675 1.21216 1.30789 1.12130 0.89725 0.92643 1.25520 0.96777 0.99094 0.95940 1.69999 1.47339 1.42267 0.98624 0.86087 0.79783 0.81078 0.76748 1.20063 1.23328 1.17916 1.60349 1.47697 1.16788 1.05301 1.21941 0.94330 1.00347 0.89220 1.20876 0.93145 0.96848 0.96623 1.20400 0.86343 0.78552 0.82576 1.44073 1.14427 1.57822 1.22476 1.90625 1.83878 1.46029 1.27049 1.22286 1.04302 0.92237 0.99183 1.22673 0.91218 1.01870 0.86020 1.87869 1.64251 1.24782 1.54673 1.22799 1.01663 0.80815 0.97071 1.21982 0.98482 1.02048 0.94028 0.94669 0.90835 0.94010 0.95548 0.93225 0.92774 0.83676 0.91668 0.93559 0.74759 0.77226 0.89239 0.89038 0.94220 0.86685 0.92510 0.87679 0.90681 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.47 9.53 71.98 0.69 -3.79 16 2 C -0.12 -4.50 5.29 30.59 0.16 -4.34 16 3 C 0.19 7.76 1.89 44.17 0.08 7.84 16 4 H 0.00 -0.18 6.89 -2.39 -0.02 -0.20 16 5 C -0.50 -24.61 7.78 25.60 0.20 -24.42 16 6 H 0.06 2.95 7.84 -2.91 -0.02 2.93 16 7 C 0.02 1.33 5.45 84.66 0.46 1.79 16 8 N -0.94 -54.82 13.96 21.45 0.30 -54.52 16 9 Si 0.93 42.89 24.36 68.60 1.67 44.56 16 10 H -0.27 -12.34 6.88 99.48 0.68 -11.65 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.25 -10.97 6.53 99.48 0.65 -10.32 16 13 N -0.67 -20.68 2.97 -495.46 -1.47 -22.15 16 14 C 0.07 1.95 4.41 86.30 0.38 2.33 16 15 C -0.07 -1.74 0.52 -52.81 -0.03 -1.76 16 16 C 0.54 14.84 5.42 87.66 0.48 15.31 16 17 N -0.82 -19.83 7.69 -173.54 -1.34 -21.16 16 18 O -0.59 -19.87 14.69 -3.02 -0.04 -19.92 16 19 C -0.14 -3.00 4.43 30.69 0.14 -2.86 16 20 C 0.06 1.26 6.61 72.02 0.48 1.73 16 21 O -0.40 -9.90 10.77 -148.98 -1.60 -11.50 16 22 C 0.05 1.27 6.55 72.01 0.47 1.74 16 23 C -0.13 -2.96 4.56 30.68 0.14 -2.82 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.07 2.38 6.94 -2.39 -0.02 2.36 16 26 H 0.04 1.76 7.03 -2.39 -0.02 1.74 16 27 H 0.03 1.11 3.30 -2.39 -0.01 1.10 16 28 H 0.05 1.75 7.45 -2.39 -0.02 1.73 16 29 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 30 H 0.34 10.35 6.47 -89.69 -0.58 9.77 16 31 H 0.06 1.90 7.40 -2.39 -0.02 1.88 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.42 9.97 5.85 -92.71 -0.54 9.42 16 34 H 0.40 8.67 8.93 -92.71 -0.83 7.84 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 1.81 6.25 -2.39 -0.01 1.79 16 37 H 0.04 0.91 7.38 -2.39 -0.02 0.89 16 38 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.60 5.82 -2.39 -0.01 1.59 16 40 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.07 1.82 8.02 -2.39 -0.02 1.80 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -61.11 310.14 0.18 -60.93 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.98 Total: 32.99 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 3.64 Total: -9.23 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -2.51 Total: -97.83 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.65 Total: -31.42 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.67 Total: 44.56 kcal Total: -61.11 0.18 -60.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.165 kcal (2) G-P(sol) polarization free energy of solvation -61.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds