Wall clock time and date at job start Mon Mar 30 2020 19:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46910 * 2 1 4 4 H 1.08998 * 109.46995 * 305.63056 * 3 2 1 5 5 C 1.50694 * 109.47062 * 185.62940 * 3 2 1 6 6 H 1.08005 * 119.99885 * 240.00286 * 5 3 2 7 7 C 1.37874 * 120.00186 * 60.00344 * 5 3 2 8 8 N 1.31515 * 120.00074 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00430 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46774 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47104 * 119.99378 * 9 7 5 12 12 H 1.48498 * 109.47249 * 240.00018 * 9 7 5 13 13 N 1.46905 * 109.46702 * 65.62888 * 3 2 1 14 14 C 1.46903 * 110.99914 * 259.08290 * 13 3 2 15 15 C 1.53004 * 109.47058 * 272.44327 * 14 13 3 16 16 C 1.50705 * 109.54219 * 303.46027 * 15 14 13 17 17 N 1.34784 * 119.99783 * 292.91122 * 16 15 14 18 18 O 1.21280 * 120.00181 * 113.18751 * 16 15 14 19 19 C 1.53174 * 109.54434 * 63.63755 * 15 14 13 20 20 C 1.53277 * 109.06263 * 176.85355 * 19 15 14 21 21 O 1.42908 * 109.46209 * 302.44353 * 20 19 15 22 22 C 1.42898 * 114.09538 * 61.15836 * 21 20 19 23 23 C 1.53098 * 109.41857 * 298.84465 * 22 21 20 24 24 H 1.08998 * 109.46859 * 297.59838 * 1 2 3 25 25 H 1.09001 * 109.47077 * 57.59796 * 1 2 3 26 26 H 1.09001 * 109.46856 * 177.60241 * 1 2 3 27 27 H 1.08998 * 109.46714 * 240.00623 * 2 1 3 28 28 H 1.08997 * 109.47039 * 120.00418 * 2 1 3 29 29 H 0.97003 * 120.00454 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00018 * 23.03903 * 13 3 2 31 31 H 1.08997 * 109.46890 * 152.44538 * 14 13 3 32 32 H 1.09003 * 109.47082 * 32.44138 * 14 13 3 33 33 H 0.96996 * 119.99873 * 175.24931 * 17 16 15 34 34 H 0.96995 * 119.99832 * 355.25400 * 17 16 15 35 35 H 1.09004 * 109.52031 * 296.83905 * 19 15 14 36 36 H 1.08997 * 109.52479 * 57.03156 * 19 15 14 37 37 H 1.08998 * 109.45882 * 182.45018 * 20 19 15 38 38 H 1.09001 * 109.47170 * 62.44713 * 20 19 15 39 39 H 1.08993 * 109.48408 * 178.86069 * 22 21 20 40 40 H 1.09004 * 109.49015 * 58.82907 * 22 21 20 41 41 H 1.09004 * 109.52169 * 297.70666 * 23 22 21 42 42 H 1.09000 * 109.57502 * 177.54765 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5967 1.9846 -0.8353 5 6 3.5405 1.4449 -0.1394 6 1 4.1538 1.8866 0.6321 7 6 4.1304 0.8831 -1.2517 8 7 3.3836 0.3448 -2.1910 9 14 5.9903 0.8866 -1.4249 10 1 6.5964 1.5473 -0.2410 11 1 6.4816 -0.5118 -1.5162 12 1 6.3716 1.6266 -2.6546 13 7 1.6643 2.0946 1.2617 14 6 0.4885 2.9561 1.0792 15 6 0.9408 4.3500 0.6394 16 6 1.9062 4.9097 1.6524 17 7 1.4781 5.2174 2.8929 18 8 3.0670 5.0880 1.3498 19 6 1.6274 4.2587 -0.7267 20 6 2.0054 5.6692 -1.1924 21 8 0.8323 6.4837 -1.2448 22 6 0.1753 6.6419 0.0142 23 6 -0.2770 5.2725 0.5280 24 1 -0.3633 0.4761 0.9107 25 1 -0.3633 0.5507 -0.8677 26 1 -0.3633 -1.0268 -0.0430 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.7986 -0.0501 -2.9738 30 1 1.5036 1.4124 1.9875 31 1 -0.0565 3.0311 2.0202 32 1 -0.1612 2.5274 0.3162 33 1 2.1119 5.5122 3.5654 34 1 0.5364 5.1438 3.1131 35 1 2.5261 3.6475 -0.6426 36 1 0.9455 3.8080 -1.4478 37 1 2.4555 5.6159 -2.1837 38 1 2.7188 6.1040 -0.4923 39 1 -0.6931 7.2892 -0.1077 40 1 0.8645 7.0893 0.7305 41 1 -0.9974 4.8421 -0.1677 42 1 -0.7398 5.3849 1.5084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:51:02 Heat of formation + Delta-G solvation = -92.183330 kcal Electronic energy + Delta-G solvation = -23133.882230 eV Core-core repulsion = 19920.443792 eV Total energy + Delta-G solvation = -3213.438438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.44695 -37.56143 -36.71416 -34.11519 -33.01192 -32.00878 -30.70082 -30.19860 -27.53898 -25.49648 -23.33285 -23.13804 -22.38660 -21.38295 -19.64933 -18.82080 -16.99403 -16.33692 -16.11819 -15.67570 -15.48397 -14.84436 -14.68111 -14.52998 -13.95265 -13.83866 -13.37618 -13.20001 -12.91661 -12.30231 -12.11775 -11.94108 -11.66784 -11.63075 -11.24444 -11.21341 -10.86369 -10.78547 -10.51769 -10.33237 -10.10600 -9.89519 -9.71715 -9.63183 -9.28433 -9.23845 -9.08007 -8.76749 -8.26383 -7.24917 -5.92508 -3.93932 3.25212 3.37058 3.45316 3.53286 3.93687 4.21335 4.50951 4.75988 4.97585 5.09653 5.32982 5.36667 5.38845 5.54245 5.61125 5.65885 5.78817 5.96620 6.06371 6.08550 6.09154 6.11076 6.19118 6.21180 6.35829 6.48471 6.68257 6.76633 6.96198 7.11911 7.18804 7.23794 7.36423 7.61380 7.73860 7.76637 7.97345 8.31488 8.54072 8.62784 8.80593 9.16123 9.70975 11.13228 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.007597 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.504733 B = 3684.637083 C = 4161.579281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C 0.212 3.788 4 H 0.043 0.957 5 C -0.483 4.483 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.681 5.681 14 C 0.072 3.928 15 C -0.067 4.067 16 C 0.548 3.452 17 N -0.865 5.865 18 O -0.525 6.525 19 C -0.136 4.136 20 C 0.051 3.949 21 O -0.390 6.390 22 C 0.062 3.938 23 C -0.147 4.147 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.101 0.899 28 H 0.034 0.966 29 H 0.258 0.742 30 H 0.325 0.675 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.394 0.606 34 H 0.392 0.608 35 H 0.128 0.872 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.786 8.181 7.340 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.190 4.190 3 C 0.105 3.895 4 H 0.060 0.940 5 C -0.522 4.522 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.310 5.310 14 C -0.059 4.059 15 C -0.071 4.071 16 C 0.334 3.666 17 N -0.429 5.429 18 O -0.400 6.400 19 C -0.174 4.174 20 C -0.025 4.025 21 O -0.309 6.309 22 C -0.015 4.015 23 C -0.186 4.186 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.119 0.881 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.142 0.858 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.224 0.776 34 H 0.220 0.780 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.631 8.728 6.523 13.900 hybrid contribution 0.044 -0.970 0.485 1.085 sum -8.587 7.758 7.008 13.529 Atomic orbital electron populations 1.21901 0.99645 0.99430 0.99517 1.22275 0.91394 1.02292 1.03011 1.19486 0.95663 0.88620 0.85773 0.93978 1.21242 0.91216 1.35244 1.04507 0.91854 1.24923 0.97881 0.95705 0.95995 1.69871 1.34475 1.39858 1.09585 0.86544 0.86195 0.77287 0.78060 1.19719 1.21431 1.21196 1.60658 1.33150 1.26099 1.11117 1.21884 0.92873 0.92088 0.99050 1.20878 0.94084 0.96085 0.96078 1.20184 0.88753 0.75256 0.82447 1.43870 1.12389 1.72935 1.13724 1.90688 1.18775 1.51813 1.78683 1.22347 1.04278 0.97846 0.92897 1.22913 0.86485 0.90707 1.02374 1.87865 1.42164 1.70792 1.30044 1.22464 0.96715 0.95625 0.86675 1.22297 0.97740 0.96677 1.01862 0.94949 0.93753 0.94714 0.88104 0.94760 0.93255 0.85772 0.93007 0.93643 0.77605 0.78020 0.85355 0.91591 0.89196 0.91662 0.89324 0.93803 0.90127 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.72 37.16 0.32 -2.40 16 2 C -0.15 -3.38 5.10 -26.73 -0.14 -3.51 16 3 C 0.21 4.93 1.02 -68.86 -0.07 4.86 16 4 H 0.04 1.06 5.16 -51.93 -0.27 0.79 16 5 C -0.48 -13.07 7.74 -34.44 -0.27 -13.34 16 6 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.08 11.29 55.43 0.63 -24.46 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.94 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 N -0.68 -13.37 5.42 -107.95 -0.59 -13.96 16 14 C 0.07 1.16 4.15 -3.82 -0.02 1.14 16 15 C -0.07 -1.08 0.49 -155.47 -0.08 -1.15 16 16 C 0.55 9.26 4.81 -10.98 -0.05 9.20 16 17 N -0.87 -10.30 8.75 31.22 0.27 -10.03 16 18 O -0.53 -11.35 14.97 5.56 0.08 -11.27 16 19 C -0.14 -2.66 3.10 -26.50 -0.08 -2.74 16 20 C 0.05 0.94 6.56 37.30 0.24 1.18 16 21 O -0.39 -6.54 10.77 -35.23 -0.38 -6.92 16 22 C 0.06 0.83 6.62 37.21 0.25 1.07 16 23 C -0.15 -1.84 4.80 -26.59 -0.13 -1.97 16 24 H 0.03 0.53 6.73 -51.93 -0.35 0.18 16 25 H 0.04 0.83 8.06 -51.93 -0.42 0.41 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.10 2.60 5.94 -51.93 -0.31 2.30 16 28 H 0.03 0.76 8.02 -51.93 -0.42 0.34 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.33 6.07 8.10 -39.29 -0.32 5.75 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.76 6.23 -51.93 -0.32 0.44 16 33 H 0.39 4.29 8.93 -40.82 -0.36 3.92 16 34 H 0.39 3.43 7.69 -40.82 -0.31 3.12 16 35 H 0.13 3.07 5.10 -51.93 -0.26 2.80 16 36 H 0.07 1.31 7.65 -51.93 -0.40 0.91 16 37 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 38 H 0.07 1.27 6.07 -51.93 -0.32 0.96 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.59 7.38 -51.93 -0.38 0.21 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.64 7.05 -51.93 -0.37 0.28 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -30.90 315.38 -6.82 -37.72 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.47 Total: 13.45 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.11 Total: -6.24 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.31 Total: -48.44 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.30 Total: -18.19 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.90 -6.82 -37.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.459 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds