Wall clock time and date at job start Mon Mar 30 2020 19:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46879 * 2 1 4 4 H 1.08998 * 109.47196 * 305.13019 * 3 2 1 5 5 C 1.50702 * 109.46891 * 185.13216 * 3 2 1 6 6 H 1.08003 * 119.99966 * 275.06672 * 5 3 2 7 7 C 1.37874 * 120.00240 * 95.06751 * 5 3 2 8 8 N 1.31512 * 120.00219 * 184.81986 * 7 5 3 9 9 Si 1.86804 * 119.99855 * 4.80939 * 7 5 3 10 10 H 1.48499 * 109.46710 * 84.86657 * 9 7 5 11 11 H 1.48501 * 109.47401 * 204.86250 * 9 7 5 12 12 H 1.48497 * 109.47115 * 324.86714 * 9 7 5 13 13 N 1.46896 * 109.47193 * 65.13338 * 3 2 1 14 14 C 1.46262 * 111.00001 * 189.99698 * 13 3 2 15 15 C 1.47547 * 114.37673 * 148.55251 * 14 13 3 16 16 C 1.54951 * 109.68805 * 62.24377 * 15 14 13 17 17 N 1.44695 * 109.51221 * 290.44068 * 16 15 14 18 18 C 1.34778 * 118.59952 * 269.14842 * 17 16 15 19 19 O 1.21513 * 119.99766 * 180.02562 * 18 17 16 20 20 O 1.34638 * 120.00169 * 0.02562 * 18 17 16 21 21 C 1.45197 * 117.00290 * 180.02562 * 20 18 17 22 22 C 1.47782 * 122.85446 * 89.15634 * 17 16 15 23 23 C 1.44759 * 111.00029 * 66.50343 * 13 3 2 24 24 H 1.09000 * 109.47366 * 299.99915 * 1 2 3 25 25 H 1.08997 * 109.47179 * 60.00066 * 1 2 3 26 26 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47194 * 239.99581 * 2 1 3 28 28 H 1.08997 * 109.47179 * 119.99934 * 2 1 3 29 29 H 0.97004 * 119.99831 * 179.97438 * 8 7 5 30 30 H 1.09007 * 108.50312 * 27.29085 * 14 13 3 31 31 H 1.08998 * 108.50775 * 269.82543 * 14 13 3 32 32 H 1.08997 * 109.42994 * 182.30227 * 15 14 13 33 33 H 1.09002 * 109.42610 * 302.19400 * 15 14 13 34 34 H 1.09003 * 109.45968 * 50.51285 * 16 15 14 35 35 H 1.08994 * 109.46328 * 170.47892 * 16 15 14 36 36 H 1.08992 * 109.47386 * 179.97438 * 21 20 18 37 37 H 1.09002 * 109.46828 * 300.00491 * 21 20 18 38 38 H 1.08998 * 109.47168 * 59.99461 * 21 20 18 39 39 H 1.08994 * 109.06517 * 197.57626 * 22 17 16 40 40 H 1.08992 * 109.06371 * 78.63618 * 22 17 16 41 41 H 1.08999 * 109.43774 * 337.92425 * 23 13 3 42 42 H 1.09007 * 109.43751 * 97.84112 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6035 1.9822 -0.8404 5 6 3.5416 1.4444 -0.1271 6 1 4.1581 1.3347 0.7528 7 6 4.1284 1.5862 -1.3667 8 7 5.4343 1.4930 -1.4905 9 14 3.0683 1.9102 -2.8703 10 1 2.8028 3.3668 -2.9840 11 1 3.7780 1.4401 -4.0870 12 1 1.7815 1.1815 -2.7351 13 7 1.6541 2.0983 1.2565 14 6 1.9139 3.5365 1.1985 15 6 0.9763 4.3571 1.9888 16 6 1.0942 3.9860 3.4886 17 7 0.5606 2.6579 3.7013 18 6 -0.7446 2.5291 4.0117 19 8 -1.2192 1.4258 4.1962 20 8 -1.5226 3.6229 4.1176 21 6 -2.9184 3.4089 4.4553 22 6 1.3847 1.4360 3.5931 23 6 2.3374 1.5013 2.3844 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8471 1.5924 -2.3627 30 1 1.8605 3.8560 0.1577 31 1 2.9251 3.7203 1.5615 32 1 1.2170 5.4118 1.8562 33 1 -0.0427 4.1723 1.6486 34 1 2.1422 4.0095 3.7872 35 1 0.5305 4.7029 4.0855 36 1 -3.4306 4.3694 4.5091 37 1 -3.3864 2.7893 3.6903 38 1 -2.9858 2.9070 5.4205 39 1 0.7286 0.5727 3.4828 40 1 1.9723 1.3212 4.5038 41 1 2.6594 0.4937 2.1216 42 1 3.2080 2.1047 2.6419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:51:14 Heat of formation + Delta-G solvation = -68.195643 kcal Electronic energy + Delta-G solvation = -22790.932194 eV Core-core repulsion = 19578.533940 eV Total energy + Delta-G solvation = -3212.398254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42116 -38.55562 -36.37510 -35.52110 -32.95326 -32.25828 -31.57293 -28.70918 -27.34688 -26.28029 -25.39307 -22.78299 -22.46578 -20.67425 -19.94185 -18.79267 -17.66164 -17.11471 -16.75573 -16.32438 -15.42400 -15.25383 -14.47672 -14.30506 -13.85685 -13.54400 -13.41607 -12.91377 -12.80233 -12.57983 -12.52427 -12.23938 -11.89210 -11.85201 -11.43368 -11.22846 -11.18042 -10.92385 -10.78605 -10.62763 -10.25650 -10.15638 -10.06808 -9.95009 -9.83400 -9.71393 -9.28562 -8.61420 -8.37294 -7.23099 -6.17480 -4.18570 2.43103 3.10848 3.21789 3.31629 3.34839 4.13163 4.33854 4.78618 5.15078 5.17997 5.19222 5.24649 5.32044 5.45621 5.60539 5.61849 5.64205 5.85887 6.01745 6.07739 6.09773 6.15615 6.21722 6.26829 6.32294 6.45276 6.53927 6.62090 6.69973 6.78986 6.80130 6.86887 7.03327 7.19300 7.27054 7.54438 7.62199 8.08072 8.21916 8.41930 8.55881 8.86122 9.47337 10.95369 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.006004 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.380454 B = 4662.430795 C = 4844.502434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C 0.181 3.819 4 H 0.040 0.960 5 C -0.544 4.544 6 H 0.076 0.924 7 C 0.078 3.922 8 N -0.896 5.896 9 Si 0.871 3.129 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.523 5.523 14 C 0.065 3.935 15 C -0.130 4.130 16 C 0.118 3.882 17 N -0.566 5.566 18 C 0.644 3.356 19 O -0.581 6.581 20 O -0.373 6.373 21 C 0.058 3.942 22 C 0.133 3.867 23 C 0.053 3.947 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.264 0.736 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 5.351 9.581 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C 0.074 3.926 4 H 0.058 0.942 5 C -0.583 4.583 6 H 0.094 0.906 7 C -0.125 4.125 8 N -0.533 5.533 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.246 5.246 14 C -0.063 4.063 15 C -0.169 4.169 16 C -0.006 4.006 17 N -0.305 5.305 18 C 0.398 3.602 19 O -0.471 6.471 20 O -0.287 6.287 21 C -0.037 4.037 22 C 0.011 3.989 23 C -0.077 4.077 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.519 4.971 9.567 15.777 hybrid contribution 0.410 0.290 -1.157 1.261 sum -11.108 5.261 8.410 14.893 Atomic orbital electron populations 1.21743 0.97763 0.99242 1.01295 1.21743 0.93451 0.98764 1.00684 1.19846 0.94393 0.90989 0.87338 0.94221 1.21643 0.90389 1.51111 0.95126 0.90601 1.25017 0.94662 0.94161 0.98700 1.69917 1.09532 1.49432 1.24423 0.86957 0.81304 0.79094 0.82835 1.20239 1.21520 1.18638 1.61247 1.57187 1.02055 1.04102 1.20703 0.96768 0.89112 0.99725 1.21458 1.01436 0.99010 0.95031 1.21576 0.99538 0.82636 0.96826 1.46499 1.05434 1.08333 1.70192 1.18166 0.82682 0.82296 0.77007 1.90945 1.73756 1.25629 1.56769 1.86247 1.23020 1.35352 1.84046 1.23084 0.77084 1.02671 1.00901 1.22208 0.93342 0.85459 0.97866 1.22219 0.93450 1.01728 0.90295 0.92229 0.94373 0.94904 0.92894 0.92902 0.92639 0.92348 0.94469 0.91042 0.91537 0.90661 0.90465 0.88487 0.92073 0.92312 0.89223 0.92310 0.89220 0.94047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.80 37.16 0.36 -2.33 16 2 C -0.11 -2.26 5.30 -26.73 -0.14 -2.40 16 3 C 0.18 4.04 1.25 -68.87 -0.09 3.95 16 4 H 0.04 0.94 4.90 -51.93 -0.25 0.68 16 5 C -0.54 -14.09 7.80 -34.44 -0.27 -14.36 16 6 H 0.08 2.13 6.86 -52.48 -0.36 1.77 16 7 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -26.29 13.96 55.43 0.77 -25.51 16 9 Si 0.87 20.90 26.99 -169.99 -4.59 16.31 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.26 -6.10 6.82 56.52 0.39 -5.71 16 13 N -0.52 -10.14 3.58 -232.98 -0.83 -10.97 16 14 C 0.07 1.18 4.43 -6.80 -0.03 1.15 16 15 C -0.13 -1.89 6.03 -28.33 -0.17 -2.06 16 16 C 0.12 1.57 5.45 -3.98 -0.02 1.55 16 17 N -0.57 -8.78 2.53 -177.99 -0.45 -9.23 16 18 C 0.64 10.68 8.34 54.06 0.45 11.13 16 19 O -0.58 -11.13 15.41 -19.28 -0.30 -11.43 16 20 O -0.37 -5.24 9.21 -40.32 -0.37 -5.61 16 21 C 0.06 0.60 10.56 101.05 1.07 1.67 16 22 C 0.13 2.10 6.46 -2.80 -0.02 2.08 16 23 C 0.05 0.95 3.88 -4.43 -0.02 0.93 16 24 H 0.06 1.16 7.76 -51.93 -0.40 0.75 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.05 1.07 6.25 -51.93 -0.32 0.75 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.06 1.15 7.44 -51.93 -0.39 0.76 16 31 H 0.04 0.70 7.18 -51.93 -0.37 0.33 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.08 0.91 7.19 -51.93 -0.37 0.54 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.55 6.96 -51.93 -0.36 1.19 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.09 1.72 5.41 -51.93 -0.28 1.44 16 42 H 0.04 0.76 7.01 -51.93 -0.36 0.39 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -30.50 324.10 -6.71 -37.21 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.86 Total: 0.99 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 1.03 Total: 3.36 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.51 Total: -45.71 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.67 Total: -17.04 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.59 Total: 16.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.50 -6.71 -37.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.990 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds