Wall clock time and date at job start Mon Mar 30 2020 19:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.46660 * 2 1 4 4 C 1.42908 * 113.99619 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.65787 * 26.81128 * 4 3 2 6 6 C 1.54595 * 110.83335 * 263.56151 * 4 3 2 7 7 N 1.48113 * 103.42321 * 204.44698 * 6 4 3 8 8 C 1.34777 * 127.03181 * 219.28751 * 7 6 4 9 9 O 1.21281 * 120.00210 * 4.85757 * 8 7 6 10 10 C 1.50703 * 119.99810 * 184.85079 * 8 7 6 11 11 H 1.08991 * 109.47616 * 333.20801 * 10 8 7 12 12 C 1.53007 * 109.46929 * 93.20955 * 10 8 7 13 13 C 1.50699 * 109.47195 * 213.20515 * 10 8 7 14 14 H 1.07999 * 120.00054 * 0.02562 * 13 10 8 15 15 C 1.37876 * 119.99979 * 180.02562 * 13 10 8 16 16 N 1.31518 * 120.00052 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00172 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47281 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47090 * 299.99482 * 17 15 13 20 20 H 1.48496 * 109.47328 * 59.99635 * 17 15 13 21 21 C 1.47483 * 105.93397 * 39.02308 * 7 6 4 22 22 C 1.53999 * 107.08551 * 334.78318 * 21 7 6 23 23 H 1.08998 * 110.33220 * 120.19541 * 22 21 7 24 24 C 1.53002 * 110.32633 * 242.30821 * 22 21 7 25 25 N 1.46893 * 109.47234 * 293.54299 * 24 22 21 26 26 H 1.09007 * 109.47305 * 59.99852 * 1 2 3 27 27 H 1.09007 * 109.47137 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47261 * 300.00025 * 1 2 3 29 29 H 1.09000 * 109.46872 * 240.00333 * 2 1 3 30 30 H 1.08998 * 109.47127 * 120.00178 * 2 1 3 31 31 H 1.09002 * 110.61568 * 85.93044 * 6 4 3 32 32 H 1.08998 * 110.54739 * 322.92940 * 6 4 3 33 33 H 1.09003 * 109.46449 * 304.23058 * 12 10 8 34 34 H 1.08999 * 109.47313 * 64.22407 * 12 10 8 35 35 H 1.08991 * 109.47165 * 184.23402 * 12 10 8 36 36 H 0.96997 * 120.00095 * 180.02562 * 16 15 13 37 37 H 1.09008 * 109.91025 * 94.14140 * 21 7 6 38 38 H 1.08997 * 109.91561 * 215.41948 * 21 7 6 39 39 H 1.09000 * 109.46877 * 53.54538 * 24 22 21 40 40 H 1.09004 * 109.47162 * 173.54213 * 24 22 21 41 41 H 1.00906 * 110.99972 * 56.04595 * 25 24 22 42 42 H 1.00897 * 111.00218 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8862 0.5830 -0.4591 6 6 3.9655 1.6653 1.4365 7 7 5.2639 2.3461 1.2260 8 6 6.4097 2.1367 1.9042 9 8 6.4704 1.2546 2.7343 10 6 7.6153 2.9986 1.6308 11 1 7.5682 3.3761 0.6095 12 6 7.6335 4.1750 2.6090 13 6 8.8683 2.1799 1.8065 14 1 8.7986 1.1394 2.0874 15 6 10.1037 2.7592 1.6084 16 7 10.1886 4.0261 1.2658 17 14 11.6568 1.7443 1.8254 18 1 12.8449 2.5936 1.5562 19 1 11.7212 1.2291 3.2167 20 1 11.6393 0.6031 0.8754 21 6 5.0484 3.2954 0.1180 22 6 3.8781 2.7517 -0.7224 23 1 3.0619 3.4738 -0.7471 24 6 4.3473 2.4327 -2.1433 25 7 4.7188 3.6783 -2.8276 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 4.1104 0.7057 1.9329 32 1 3.2882 2.2978 2.0103 33 1 6.6946 4.7236 2.5349 34 1 7.7563 3.8006 3.6253 35 1 8.4625 4.8387 2.3636 36 1 11.0577 4.4336 1.1261 37 1 4.7949 4.2783 0.5154 38 1 5.9470 3.3606 -0.4953 39 1 5.2117 1.7700 -2.1003 40 1 3.5415 1.9437 -2.6909 41 1 5.4193 4.1828 -2.3051 42 1 5.0328 3.4942 -3.7686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342058607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:50:57 Heat of formation + Delta-G solvation = -87.654961 kcal Electronic energy + Delta-G solvation = -21734.986745 eV Core-core repulsion = 18521.744671 eV Total energy + Delta-G solvation = -3213.242073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89698 -38.10390 -36.59314 -34.30377 -33.75215 -31.74024 -30.58768 -29.66201 -28.09137 -25.21284 -25.13969 -23.32478 -22.71939 -21.37272 -20.21616 -18.63031 -17.25335 -16.53013 -16.25307 -15.78409 -15.51970 -15.10236 -14.84798 -14.51208 -14.24531 -13.75341 -13.55779 -13.25781 -12.83346 -12.73859 -12.64015 -12.48093 -11.89052 -11.81562 -11.54205 -11.46092 -11.23170 -11.05051 -10.97124 -10.74427 -10.69557 -10.56534 -10.27897 -10.07318 -9.64854 -9.05162 -8.75586 -8.64748 -8.36268 -8.12667 -6.07872 -4.11777 3.25935 3.32066 3.35153 3.40944 3.64396 3.82436 4.38702 4.42995 4.63136 4.73327 4.86833 4.90119 5.05694 5.20661 5.23046 5.25136 5.32471 5.43204 5.55721 5.68223 5.70439 5.75734 5.86089 5.89421 5.96037 6.00024 6.07845 6.20584 6.63812 6.75385 6.87020 6.98637 7.05947 7.17620 7.37534 7.44345 7.73093 7.94708 8.10405 8.36258 8.92129 9.15802 9.52929 10.99527 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.004766 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.509192 B = 5873.198287 C = 6381.462861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.374 6.374 4 C 0.082 3.918 5 H 0.074 0.926 6 C 0.084 3.916 7 N -0.631 5.631 8 C 0.542 3.458 9 O -0.547 6.547 10 C 0.038 3.962 11 H 0.044 0.956 12 C -0.126 4.126 13 C -0.503 4.503 14 H 0.066 0.934 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.900 3.100 18 H -0.287 1.287 19 H -0.275 1.275 20 H -0.277 1.277 21 C 0.112 3.888 22 C -0.098 4.098 23 H 0.102 0.898 24 C 0.070 3.930 25 N -0.851 5.851 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.011 0.989 34 H 0.035 0.965 35 H 0.092 0.908 36 H 0.262 0.738 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.345 0.655 42 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.130 -2.684 -7.218 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.292 6.292 4 C 0.022 3.978 5 H 0.092 0.908 6 C -0.040 4.040 7 N -0.369 5.369 8 C 0.335 3.665 9 O -0.422 6.422 10 C 0.017 3.983 11 H 0.062 0.938 12 C -0.185 4.185 13 C -0.542 4.542 14 H 0.084 0.916 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.728 3.272 18 H -0.212 1.212 19 H -0.201 1.201 20 H -0.203 1.203 21 C -0.012 4.012 22 C -0.117 4.117 23 H 0.121 0.879 24 C -0.061 4.061 25 N -0.381 5.381 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.055 0.945 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.159 0.841 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.726 -2.679 -6.634 17.277 hybrid contribution 1.896 -1.129 0.017 2.207 sum -13.830 -3.808 -6.617 15.797 Atomic orbital electron populations 1.21737 0.93764 1.02120 1.03112 1.22532 0.95512 0.83942 1.00224 1.87913 1.20144 1.26286 1.94876 1.23110 0.80987 0.98055 0.95648 0.90771 1.22618 0.86073 0.98974 0.96317 1.49033 1.09735 1.41451 1.36721 1.21873 0.82265 0.83825 0.78549 1.90543 1.83146 1.33680 1.34861 1.18849 0.89122 0.93009 0.97337 0.93846 1.21661 0.99840 0.98473 0.98484 1.20986 0.89185 0.97152 1.46830 0.91594 1.24920 0.99061 0.95088 0.94880 1.69866 1.24728 1.11118 1.47537 0.86515 0.81868 0.79895 0.78930 1.21230 1.20063 1.20264 1.22053 0.97633 0.93097 0.88387 1.22217 0.98461 0.97256 0.93814 0.87930 1.21805 0.99380 0.91318 0.93555 1.58773 1.49987 1.22635 1.06720 0.91894 0.91237 0.91804 0.93398 0.93213 0.90178 0.90925 0.97010 0.94535 0.88931 0.92796 0.91357 0.90324 0.94992 0.90871 0.84148 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.83 16 2 C 0.05 0.54 6.49 37.16 0.24 0.79 16 3 O -0.37 -4.68 10.09 -35.23 -0.36 -5.03 16 4 C 0.08 1.08 3.10 -25.04 -0.08 1.00 16 5 H 0.07 0.96 7.55 -51.93 -0.39 0.57 16 6 C 0.08 1.34 6.81 -2.32 -0.02 1.33 16 7 N -0.63 -11.87 3.29 -169.98 -0.56 -12.43 16 8 C 0.54 12.88 6.90 -10.98 -0.08 12.80 16 9 O -0.55 -14.72 16.25 5.56 0.09 -14.63 16 10 C 0.04 0.96 2.35 -92.92 -0.22 0.74 16 11 H 0.04 1.09 6.50 -51.93 -0.34 0.75 16 12 C -0.13 -3.06 8.89 37.16 0.33 -2.73 16 13 C -0.50 -14.25 8.32 -34.44 -0.29 -14.54 16 14 H 0.07 1.96 7.21 -52.49 -0.38 1.58 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -24.78 11.36 55.43 0.63 -24.15 16 17 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 C 0.11 1.71 5.85 -2.98 -0.02 1.70 16 22 C -0.10 -1.25 3.01 -89.24 -0.27 -1.52 16 23 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 24 C 0.07 0.81 5.97 -3.83 -0.02 0.79 16 25 N -0.85 -9.23 9.62 -10.37 -0.10 -9.33 16 26 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.43 8.11 -51.93 -0.42 0.01 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.35 7.82 -51.93 -0.41 0.95 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 2.38 6.19 -51.93 -0.32 2.06 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 38 H 0.08 1.24 5.58 -51.93 -0.29 0.95 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.35 3.83 7.64 -39.29 -0.30 3.53 16 42 H 0.34 3.11 9.08 -39.29 -0.36 2.76 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -31.32 338.23 -7.33 -38.65 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.99 Total: 4.12 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.12 Total: 1.12 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.03 Total: -45.90 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.27 Total: -19.66 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.32 -7.33 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342058607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.002 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds