Wall clock time and date at job start Mon Mar 30 2020 19:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36937 * 119.99793 * 2 1 4 4 H 1.08001 * 120.00039 * 159.32925 * 3 2 1 5 5 C 1.38818 * 120.00168 * 339.32347 * 3 2 1 6 6 N 1.31617 * 119.99680 * 347.99335 * 5 3 2 7 7 Si 1.86800 * 119.99971 * 167.98828 * 5 3 2 8 8 H 1.48496 * 109.47158 * 270.00196 * 7 5 3 9 9 H 1.48507 * 109.47014 * 30.00273 * 7 5 3 10 10 H 1.48495 * 109.47121 * 150.00178 * 7 5 3 11 11 C 1.46495 * 120.00124 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47228 * 269.99699 * 11 2 1 13 13 N 1.46495 * 109.47228 * 180.02562 * 12 11 2 14 14 C 1.34783 * 120.00063 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00091 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00062 * 180.02562 * 14 13 12 17 17 H 1.09010 * 108.94504 * 61.23278 * 16 14 13 18 18 C 1.46279 * 108.96224 * 179.97438 * 16 14 13 19 19 C 1.54203 * 112.07615 * 181.56148 * 18 16 14 20 20 C 1.50417 * 108.76494 * 282.18944 * 19 18 16 21 21 O 1.44185 * 112.77379 * 92.57920 * 20 19 18 22 22 C 1.44185 * 116.92618 * 318.47610 * 21 20 19 23 23 C 1.50412 * 112.77617 * 318.47073 * 22 21 20 24 24 H 1.09000 * 109.47591 * 84.89435 * 1 2 3 25 25 H 1.09002 * 109.47462 * 204.89724 * 1 2 3 26 26 H 1.09000 * 109.47327 * 324.89477 * 1 2 3 27 27 H 0.97000 * 119.99835 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.47037 * 29.99474 * 11 2 1 29 29 H 1.09008 * 109.47047 * 149.99619 * 11 2 1 30 30 H 1.09001 * 109.46928 * 299.99842 * 12 11 2 31 31 H 1.08996 * 109.46906 * 59.99709 * 12 11 2 32 32 H 0.97003 * 119.99961 * 359.97438 * 13 12 11 33 33 H 1.09001 * 108.96554 * 302.23173 * 18 16 14 34 34 H 1.09002 * 108.96331 * 60.97854 * 18 16 14 35 35 H 1.09001 * 109.59061 * 41.97058 * 19 18 16 36 36 H 1.09000 * 109.58978 * 162.40917 * 19 18 16 37 37 H 1.09005 * 108.81808 * 213.42689 * 20 19 18 38 38 H 1.09003 * 108.82563 * 331.83345 * 20 19 18 39 39 H 1.08997 * 108.82417 * 79.32634 * 22 21 20 40 40 H 1.09000 * 108.81800 * 197.62821 * 22 21 20 41 41 H 1.08998 * 109.59349 * 332.79264 * 23 22 21 42 42 H 1.09000 * 109.58692 * 212.35933 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1774 1.2161 0.3302 5 6 1.5225 2.3494 -0.4245 6 7 0.3634 2.2836 -1.0444 7 14 2.3239 4.0083 -0.1157 8 1 1.8733 4.5392 1.1958 9 1 3.8005 3.8504 -0.1050 10 1 1.9350 4.9540 -1.1925 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 7 3.1856 -2.9793 1.4411 14 6 3.5222 -3.5637 2.6081 15 8 3.2187 -3.0392 3.6587 16 6 4.2768 -4.8681 2.6075 17 1 5.2367 -4.7215 2.1121 18 6 4.5144 -5.2804 3.9908 19 6 5.3188 -6.5933 4.0741 20 6 4.3956 -7.7456 3.7869 21 8 4.3845 -8.1182 2.3941 22 6 4.3788 -7.0450 1.4312 23 6 3.4639 -5.9169 1.8219 24 1 -0.3634 0.0915 -1.0236 25 1 -0.3634 -0.9322 0.4326 26 1 -0.3634 0.8407 0.5910 27 1 -0.0746 3.0966 -1.3413 28 1 1.6083 -2.0281 -0.5147 29 1 3.1499 -1.1381 -0.5144 30 1 3.0416 -0.9515 1.9558 31 1 1.5002 -1.8415 1.9555 32 1 3.4280 -3.3990 0.6009 33 1 5.0664 -4.4937 4.5051 34 1 3.5548 -5.4223 4.4879 35 1 6.1226 -6.5769 3.3380 36 1 5.7385 -6.7019 5.0742 37 1 4.7113 -8.6050 4.3784 38 1 3.3840 -7.4680 4.0832 39 1 5.3925 -6.6571 1.3309 40 1 4.0585 -7.4396 0.4669 41 1 2.6587 -6.2998 2.4489 42 1 3.0456 -5.4586 0.9258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663171683.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:48:38 Heat of formation + Delta-G solvation = -68.934772 kcal Electronic energy + Delta-G solvation = -21120.576519 eV Core-core repulsion = 17908.146214 eV Total energy + Delta-G solvation = -3212.430305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54122 -38.63952 -36.15950 -34.82956 -34.28052 -32.67844 -31.28938 -28.54360 -27.65159 -25.95363 -25.71172 -23.41038 -21.67447 -20.81201 -20.66787 -19.85385 -17.59590 -16.98265 -16.72109 -16.14091 -15.66219 -15.48585 -14.74934 -14.66709 -14.10883 -13.85193 -13.71514 -13.45686 -13.36387 -13.08081 -12.70696 -12.43028 -12.33578 -11.74590 -11.53020 -11.19753 -11.13204 -11.07261 -10.91177 -10.87839 -10.67882 -10.61394 -10.34998 -9.98176 -9.93219 -9.78646 -9.56744 -8.73934 -8.57825 -6.85084 -5.75838 -3.22475 2.75343 3.30003 3.37896 3.44136 3.45061 3.52473 4.37531 4.40347 4.46569 4.53099 4.63817 4.73562 4.95586 5.12629 5.17021 5.26064 5.33636 5.37619 5.47601 5.55805 5.60153 5.70256 5.71752 5.78682 5.83286 5.89568 5.93714 6.10668 6.22033 6.57247 6.61692 6.74626 6.85914 6.94331 7.38245 7.68705 7.71004 7.78778 8.33636 8.41120 9.19462 9.81761 10.28684 11.29157 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039509 B = 0.003275 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.525063 B = 8548.827887 C = 8864.316610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.599 5.599 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.279 1.279 10 H -0.291 1.291 11 C 0.144 3.856 12 C 0.093 3.907 13 N -0.723 5.723 14 C 0.509 3.491 15 O -0.543 6.543 16 C -0.105 4.105 17 H 0.096 0.904 18 C -0.110 4.110 19 C -0.153 4.153 20 C 0.061 3.939 21 O -0.396 6.396 22 C 0.065 3.935 23 C -0.148 4.148 24 H 0.031 0.969 25 H -0.003 1.003 26 H 0.046 0.954 27 H 0.253 0.747 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.396 0.604 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.394 -19.434 5.458 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.205 1.205 10 H -0.217 1.217 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.374 5.374 14 C 0.294 3.706 15 O -0.420 6.420 16 C -0.126 4.126 17 H 0.114 0.886 18 C -0.147 4.147 19 C -0.190 4.190 20 C -0.015 4.015 21 O -0.316 6.316 22 C -0.011 4.011 23 C -0.186 4.186 24 H 0.049 0.951 25 H 0.015 0.985 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.230 0.770 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.025 -19.035 6.065 21.530 hybrid contribution 0.449 1.192 -0.152 1.283 sum 8.474 -17.843 5.913 20.619 Atomic orbital electron populations 1.20847 0.82148 0.95604 0.99566 1.43808 1.02050 1.00307 1.85988 1.19232 0.97005 0.85155 1.37469 0.91219 1.25000 0.97551 0.98516 0.98519 1.70085 1.17175 1.26913 1.41169 0.86207 0.78766 0.83812 0.77468 1.21403 1.20463 1.21690 1.20829 0.96669 0.89150 0.91794 1.22437 0.95626 0.83111 1.02071 1.46122 1.58112 1.25125 1.08038 1.20586 0.79728 0.86205 0.84053 1.90703 1.54693 1.65276 1.31358 1.20474 0.99848 0.93288 0.99025 0.88621 1.20487 1.01528 0.97330 0.95400 1.21945 0.99069 0.94846 1.03181 1.22355 0.99019 0.97946 0.82190 1.88252 1.95493 1.32759 1.15066 1.22292 0.98660 0.88203 0.91984 1.22014 0.99213 0.96011 1.01322 0.95052 0.98468 0.93522 0.93678 0.94098 0.93004 0.91619 0.92277 0.77042 0.90696 0.90959 0.90682 0.90126 0.89612 0.92951 0.92880 0.89096 0.89950 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 8.96 59.84 0.54 4.56 16 2 N -0.60 -14.96 2.93 -181.12 -0.53 -15.50 16 3 C -0.26 -7.12 9.68 -15.06 -0.15 -7.27 16 4 H 0.07 1.87 7.86 -52.49 -0.41 1.46 16 5 C 0.00 0.07 5.13 -17.43 -0.09 -0.02 16 6 N -0.91 -26.44 10.52 55.49 0.58 -25.86 16 7 Si 0.91 21.95 29.57 -169.99 -5.03 16.92 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 C 0.14 2.81 5.76 -4.04 -0.02 2.79 16 12 C 0.09 1.70 6.00 -4.04 -0.02 1.67 16 13 N -0.72 -10.03 5.28 -60.30 -0.32 -10.35 16 14 C 0.51 7.32 7.13 -10.98 -0.08 7.24 16 15 O -0.54 -10.25 15.81 5.56 0.09 -10.16 16 16 C -0.10 -1.04 2.09 -94.34 -0.20 -1.24 16 17 H 0.10 0.80 7.55 -51.92 -0.39 0.41 16 18 C -0.11 -1.09 3.89 -29.30 -0.11 -1.20 16 19 C -0.15 -1.17 5.61 -27.39 -0.15 -1.32 16 20 C 0.06 0.50 6.26 35.87 0.22 0.72 16 21 O -0.40 -3.87 10.88 -35.23 -0.38 -4.25 16 22 C 0.06 0.51 6.26 35.87 0.22 0.73 16 23 C -0.15 -1.25 4.93 -27.39 -0.14 -1.38 16 24 H 0.03 0.83 7.41 -51.93 -0.38 0.44 16 25 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 16 26 H 0.05 1.25 7.15 -51.93 -0.37 0.88 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.05 0.98 8.04 -51.92 -0.42 0.57 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.40 4.20 7.64 -40.82 -0.31 3.89 16 33 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 34 H 0.07 0.80 7.46 -51.93 -0.39 0.42 16 35 H 0.07 0.56 7.15 -51.93 -0.37 0.19 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.44 6.67 -51.93 -0.35 0.09 16 39 H 0.05 0.37 6.67 -51.93 -0.35 0.02 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.78 7.15 -51.93 -0.37 0.41 16 42 H 0.08 0.65 6.99 -51.93 -0.36 0.28 16 LS Contribution 328.80 15.07 4.95 4.95 Total: -1.00 -32.59 328.80 -7.58 -40.17 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.97 Total: -1.20 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 0.02 Total: 5.28 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.27 Total: -51.70 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.30 Total: -14.42 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.59 -7.58 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663171683.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.763 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds