Wall clock time and date at job start Mon Mar 30 2020 19:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 C 1.52997 * 109.46975 * 239.99992 * 2 1 3 5 5 C 1.53006 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 9 9 H 1.08992 * 109.47554 * 59.99639 * 8 7 6 10 10 N 1.46505 * 109.46998 * 180.02562 * 8 7 6 11 11 C 1.34770 * 119.99926 * 274.99646 * 10 8 7 12 12 O 1.21283 * 120.00026 * 0.02562 * 11 10 8 13 13 C 1.50697 * 120.00243 * 180.02562 * 11 10 8 14 14 S 1.81003 * 109.47546 * 179.97438 * 13 11 10 15 15 C 1.76196 * 99.99954 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00576 * 0.02562 * 15 14 13 17 17 C 1.38808 * 119.99863 * 179.97438 * 15 14 13 18 18 N 1.31627 * 119.99558 * 0.02562 * 17 15 14 19 19 Si 1.86790 * 120.00027 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47461 * 60.00071 * 19 17 15 21 21 H 1.48501 * 109.47034 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47015 * 300.00085 * 19 17 15 23 23 H 1.08996 * 109.47261 * 300.00175 * 1 2 3 24 24 H 1.09004 * 109.47368 * 59.99791 * 1 2 3 25 25 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47067 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47312 * 299.99943 * 3 2 1 28 28 H 1.09004 * 109.46930 * 59.99999 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00370 * 4 2 1 30 30 H 1.09000 * 109.47140 * 60.00388 * 4 2 1 31 31 H 1.08998 * 109.46505 * 299.99708 * 5 4 2 32 32 H 1.08996 * 109.46884 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 35 35 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47194 * 299.99650 * 7 6 5 37 37 H 0.96996 * 119.99706 * 94.99842 * 10 8 7 38 38 H 1.09007 * 109.47167 * 300.00011 * 13 11 10 39 39 H 1.09004 * 109.47373 * 60.00018 * 13 11 10 40 40 H 0.97001 * 119.99640 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5694 -0.7222 1.2495 8 6 2.0395 -0.7217 1.2492 9 1 1.6757 -1.7491 1.2490 10 7 1.5511 -0.0305 2.4451 11 6 1.4220 -0.7024 3.6062 12 8 1.7104 -1.8792 3.6612 13 6 0.9191 0.0083 4.8362 14 16 0.8569 -1.1545 6.2220 15 6 0.2541 -0.0886 7.4889 16 1 0.0451 0.9478 7.2686 17 6 0.0467 -0.5812 8.7699 18 7 0.3009 -1.8445 9.0383 19 14 -0.5930 0.5485 10.1129 20 1 -1.9190 1.0871 9.7167 21 1 -0.7266 -0.2147 11.3797 22 1 0.3586 1.6714 10.3100 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6765 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1392 31 1 3.9336 0.3057 -1.2488 32 1 3.9332 -1.2353 -2.1392 33 1 5.1695 -1.4434 0.0007 34 1 3.7158 -2.4709 0.0000 35 1 3.9328 -1.2360 2.1395 36 1 3.9331 0.3054 1.2498 37 1 1.3208 0.9107 2.4012 38 1 1.5916 0.8305 5.0812 39 1 -0.0801 0.4004 4.6464 40 1 0.1564 -2.1887 9.9336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157081663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:51:16 Heat of formation + Delta-G solvation = -67.942229 kcal Electronic energy + Delta-G solvation = -19132.173151 eV Core-core repulsion = 16264.820095 eV Total energy + Delta-G solvation = -2867.353056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42700 -38.26382 -34.07234 -33.17225 -32.41171 -30.38786 -28.46141 -27.54495 -26.18450 -25.43736 -22.75392 -21.24419 -20.13196 -18.78050 -17.73538 -16.36981 -16.22677 -15.11747 -14.98782 -14.78965 -14.52813 -14.40799 -14.02094 -13.62498 -13.28717 -13.10983 -12.94808 -12.52026 -12.20890 -12.11323 -12.02642 -11.66486 -11.56449 -11.27355 -11.08504 -11.02684 -11.02300 -10.76851 -10.50857 -10.35700 -10.20703 -9.79455 -9.29134 -9.04510 -8.74892 -8.21341 -6.47616 -6.19879 -3.90138 3.08310 3.16439 3.24525 3.28742 3.33504 3.77157 4.22405 4.40574 4.48638 4.62516 4.87650 5.02578 5.10972 5.13927 5.15097 5.22894 5.26456 5.38866 5.48747 5.49401 5.59680 5.64311 5.71109 5.74647 5.83475 5.86582 5.92346 5.92943 6.00783 6.02773 6.09248 6.17025 6.17620 6.28033 6.40573 6.77634 7.60838 7.80457 8.36660 8.69756 9.25253 10.87518 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.040235 B = 0.003738 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.750631 B = 7489.584430 C = 7782.417303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.071 4.071 3 C -0.147 4.147 4 C -0.105 4.105 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.133 4.133 8 C 0.159 3.841 9 H 0.086 0.914 10 N -0.733 5.733 11 C 0.532 3.468 12 O -0.518 6.518 13 C -0.154 4.154 14 S -0.060 6.060 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.395 0.605 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.996 6.425 -21.129 22.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.171 4.171 8 C 0.054 3.946 9 H 0.104 0.896 10 N -0.387 5.387 11 C 0.318 3.682 12 O -0.393 6.393 13 C -0.305 4.305 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.200 1.200 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.466 4.304 -20.884 21.786 hybrid contribution -0.869 2.570 0.846 2.842 sum 3.597 6.875 -20.038 21.488 Atomic orbital electron populations 1.21866 0.94082 1.02226 1.01775 1.20781 0.95824 0.95815 0.94730 1.22001 1.01720 0.95075 1.01604 1.21563 0.95616 1.00600 0.96548 1.21612 0.95569 1.00923 0.97871 1.21488 1.00227 0.99661 0.94072 1.21983 0.95548 1.01065 0.98551 1.20863 0.93318 0.97139 0.83257 0.89594 1.46143 1.69139 1.13859 1.09555 1.20282 0.76895 0.87247 0.83785 1.90692 1.48388 1.15759 1.84417 1.23539 1.03564 1.04823 0.98525 1.85380 1.86300 1.12873 0.98741 1.22839 1.51040 0.98135 0.96466 0.91026 1.24984 0.95102 0.95525 0.97923 1.70009 1.45509 1.13220 1.21575 0.86232 0.79315 0.80032 0.79967 1.19946 1.20812 1.19950 0.92262 0.92670 0.92463 0.91687 0.92495 0.92748 0.91678 0.91709 0.91699 0.92109 0.91925 0.91764 0.91140 0.91683 0.76983 0.89370 0.89385 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.31 37.16 0.31 -1.02 16 2 C -0.07 -0.65 0.56 -154.51 -0.09 -0.73 16 3 C -0.15 -1.17 7.61 37.16 0.28 -0.88 16 4 C -0.11 -0.85 4.73 -26.73 -0.13 -0.98 16 5 C -0.12 -0.96 5.65 -26.73 -0.15 -1.11 16 6 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 7 C -0.13 -1.55 5.22 -26.73 -0.14 -1.69 16 8 C 0.16 1.94 1.59 -67.93 -0.11 1.83 16 9 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 10 N -0.73 -10.03 4.30 -53.81 -0.23 -10.26 16 11 C 0.53 10.04 7.81 -10.99 -0.09 9.95 16 12 O -0.52 -11.85 15.53 5.55 0.09 -11.77 16 13 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 14 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 15 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 17 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 18 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 19 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H 0.06 0.59 7.44 -51.93 -0.39 0.20 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.43 6.50 -51.93 -0.34 0.09 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 37 H 0.40 4.42 6.65 -40.82 -0.27 4.15 16 38 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 39 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -33.12 324.58 -8.10 -41.22 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.50 Total: 0.80 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 0.16 Total: -11.92 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.50 Total: -35.88 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.12 -8.10 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157081663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.722 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds