Wall clock time and date at job start Mon Mar 30 2020 19:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47157 * 2 1 4 4 H 1.08998 * 109.47109 * 305.00420 * 3 2 1 5 5 C 1.50697 * 109.47303 * 184.99630 * 3 2 1 6 6 H 1.07991 * 120.00449 * 239.72787 * 5 3 2 7 7 C 1.37885 * 119.99686 * 60.00618 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 N 1.46507 * 109.46582 * 64.99992 * 3 2 1 14 14 C 1.34770 * 120.00008 * 274.99697 * 13 3 2 15 15 O 1.21701 * 120.00200 * 0.02562 * 14 13 3 16 16 C 1.46427 * 119.99871 * 180.02562 * 14 13 3 17 17 C 1.34466 * 126.02290 * 179.69334 * 16 14 13 18 18 C 1.46879 * 110.79272 * 179.90243 * 17 16 14 19 19 C 1.40055 * 131.74556 * 180.17530 * 18 17 16 20 20 C 1.37813 * 119.87601 * 180.23409 * 19 18 17 21 21 C 1.38425 * 120.38351 * 359.97438 * 20 19 18 22 22 C 1.38501 * 120.16789 * 0.02562 * 21 20 19 23 23 C 1.37533 * 120.00922 * 359.97438 * 22 21 20 24 24 C 1.50929 * 132.97147 * 180.02562 * 23 22 21 25 25 H 1.08992 * 109.47009 * 300.00022 * 1 2 3 26 26 H 1.09000 * 109.47171 * 59.99755 * 1 2 3 27 27 H 1.08993 * 109.47092 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47049 * 240.00557 * 2 1 3 29 29 H 1.09000 * 109.47171 * 120.00245 * 2 1 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 0.97004 * 119.99614 * 94.99970 * 13 3 2 32 32 H 1.08000 * 124.60529 * 0.02562 * 17 16 14 33 33 H 1.07996 * 120.06321 * 0.21375 * 19 18 17 34 34 H 1.08000 * 119.80927 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.91854 * 180.02562 * 21 20 19 36 36 H 1.08008 * 119.99843 * 180.02562 * 22 21 20 37 37 H 1.08998 * 110.23418 * 60.96000 * 24 23 22 38 38 H 1.09000 * 110.30831 * 299.03013 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1237 6 1 4.1470 1.8928 0.6502 7 6 4.1433 0.8785 -1.2280 8 7 3.4064 0.3324 -2.1705 9 14 6.0046 0.8876 -1.3851 10 1 6.6018 0.1579 -0.2379 11 1 6.3975 0.2232 -2.6538 12 1 6.4942 2.2896 -1.3889 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3423 2.6318 0.4313 16 6 0.0479 3.3194 2.6181 17 6 -1.1272 3.9255 2.8626 18 6 -1.1601 4.4679 4.2272 19 6 -2.1501 5.1668 4.9293 20 6 -1.9156 5.5729 6.2251 21 6 -0.7065 5.2937 6.8384 22 6 0.2788 4.6030 6.1524 23 6 0.0570 4.1923 4.8587 24 6 0.9010 3.4392 3.8594 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 3.8296 -0.0660 -2.9471 31 1 2.2719 2.1230 1.9979 32 1 -1.9376 4.0013 2.1528 33 1 -3.0954 5.3874 4.4559 34 1 -2.6800 6.1115 6.7657 35 1 -0.5308 5.6151 7.8544 36 1 1.2211 4.3862 6.6337 37 1 1.1479 2.4498 4.2442 38 1 1.8121 3.9953 3.6385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183979044.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:51:00 Heat of formation + Delta-G solvation = 0.124798 kcal Electronic energy + Delta-G solvation = -19931.288019 eV Core-core repulsion = 16931.442619 eV Total energy + Delta-G solvation = -2999.845400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43468 -38.78615 -35.85183 -34.94072 -32.39765 -31.47678 -30.98310 -29.11286 -27.31964 -26.85350 -23.84134 -22.73163 -21.35050 -21.09520 -19.54844 -18.91026 -17.10151 -16.37924 -15.81088 -15.53175 -15.08824 -14.90040 -14.61305 -14.12032 -14.00334 -13.51752 -13.26407 -12.78497 -12.63428 -12.32263 -11.99874 -11.72316 -11.55672 -11.46658 -11.24316 -10.99686 -10.91485 -10.82927 -10.33726 -10.18328 -10.05676 -9.62981 -9.16406 -9.05117 -8.89816 -8.50515 -8.21187 -7.80295 -6.12812 -4.22584 0.62022 1.26461 2.11890 3.25146 3.30669 3.31581 3.64854 4.01441 4.03069 4.26790 4.35719 4.69398 4.84156 4.86536 4.96490 5.18491 5.27844 5.38863 5.48119 5.56959 5.69527 5.83818 5.84765 6.19058 6.30891 6.39218 6.40287 6.41417 6.47117 6.67034 6.69680 6.82831 7.05091 7.20585 7.36169 7.43175 7.61547 7.73309 7.89668 8.17555 8.64818 8.76358 9.10304 9.44694 10.92431 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.028966 B = 0.004067 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.419286 B = 6883.522596 C = 7553.209476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.555 3.445 15 O -0.544 6.544 16 C -0.159 4.159 17 C -0.058 4.058 18 C -0.079 4.079 19 C -0.093 4.093 20 C -0.127 4.127 21 C -0.116 4.116 22 C -0.104 4.104 23 C -0.089 4.089 24 C -0.061 4.061 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.498 7.286 15.973 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.346 5.346 14 C 0.341 3.659 15 O -0.424 6.424 16 C -0.162 4.162 17 C -0.078 4.078 18 C -0.079 4.079 19 C -0.111 4.111 20 C -0.145 4.145 21 C -0.134 4.134 22 C -0.122 4.122 23 C -0.089 4.089 24 C -0.097 4.097 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.987 7.130 15.076 18.081 hybrid contribution 1.229 0.009 0.292 1.264 sum -5.758 7.139 15.368 17.897 Atomic orbital electron populations 1.21847 0.98348 0.98085 1.01272 1.21940 0.92619 0.99711 1.02354 1.18826 0.94251 0.89245 0.80876 0.93168 1.21188 0.90661 1.39099 1.06470 0.92116 1.24884 0.98614 0.94773 0.95351 1.69884 1.35237 1.37342 1.09443 0.86512 0.84827 0.78316 0.77466 1.20150 1.21125 1.20184 1.46423 1.14255 1.55290 1.18601 1.17354 0.83087 0.79383 0.86048 1.90800 1.51654 1.60301 1.39694 1.22316 0.96830 1.01588 0.95495 1.22226 0.97370 0.94757 0.93421 1.19802 0.94846 0.99145 0.94143 1.20962 0.98401 0.97415 0.94318 1.20972 0.97560 1.00984 0.94938 1.21168 0.93590 0.98835 0.99776 1.20340 0.99666 0.99088 0.93063 1.20559 0.95775 0.98216 0.94361 1.19914 0.98273 1.00812 0.90729 0.94280 0.93120 0.95813 0.88185 0.95003 0.92479 0.77899 0.84133 0.85857 0.85867 0.85792 0.85822 0.87566 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.74 2.24 -69.08 -0.16 6.59 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 8 N -0.88 -24.54 11.28 55.43 0.63 -23.91 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.70 -14.43 5.02 -56.32 -0.28 -14.72 16 14 C 0.56 11.23 6.34 -12.97 -0.08 11.15 16 15 O -0.54 -12.88 13.98 5.19 0.07 -12.81 16 16 C -0.16 -2.56 6.26 -102.47 -0.64 -3.20 16 17 C -0.06 -0.86 10.48 -37.42 -0.39 -1.26 16 18 C -0.08 -1.04 6.21 -105.11 -0.65 -1.69 16 19 C -0.09 -1.02 10.11 -39.06 -0.39 -1.41 16 20 C -0.13 -1.19 10.01 -39.67 -0.40 -1.59 16 21 C -0.12 -1.07 10.06 -39.42 -0.40 -1.46 16 22 C -0.10 -1.07 10.03 -39.74 -0.40 -1.47 16 23 C -0.09 -1.10 6.36 -104.16 -0.66 -1.76 16 24 C -0.06 -0.78 5.97 -28.73 -0.17 -0.95 16 25 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 26 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.39 6.92 7.85 -40.82 -0.32 6.60 16 32 H 0.14 2.05 8.06 -52.49 -0.42 1.62 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 316.97 15.07 4.78 4.78 Total: -1.00 -30.23 316.97 -9.47 -39.70 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.07 Total: 7.27 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -4.57 Total: -15.70 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.34 Total: -38.63 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.07 Total: -12.81 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.23 -9.47 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183979044.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.825 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds