Wall clock time and date at job start Mon Mar 30 2020 19:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81398 * 102.99903 * 2 1 4 4 C 1.53000 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.46901 * 54.99743 * 4 3 2 6 6 C 1.53003 * 109.46954 * 294.99920 * 4 3 2 7 7 C 1.50697 * 109.47179 * 175.00087 * 4 3 2 8 8 O 1.21294 * 120.00276 * 23.04512 * 7 4 3 9 9 N 1.34778 * 120.00139 * 203.04423 * 7 4 3 10 10 C 1.37101 * 119.99611 * 5.17325 * 9 7 4 11 11 H 1.07998 * 120.00304 * 235.27652 * 10 9 7 12 12 C 1.38957 * 120.00101 * 55.27687 * 10 9 7 13 13 N 1.31408 * 119.99682 * 17.47724 * 12 10 9 14 14 Si 1.86797 * 119.99941 * 197.48165 * 12 10 9 15 15 H 1.48508 * 109.47054 * 89.99559 * 14 12 10 16 16 H 1.48500 * 109.47405 * 209.99534 * 14 12 10 17 17 H 1.48500 * 109.47337 * 329.99962 * 14 12 10 18 18 C 1.46496 * 120.00521 * 185.17305 * 9 7 4 19 19 C 1.55236 * 110.58278 * 230.43691 * 18 9 7 20 20 C 1.54890 * 102.59108 * 203.33778 * 19 18 9 21 21 C 1.54269 * 104.30792 * 37.92871 * 20 19 18 22 22 C 1.53870 * 106.60304 * 336.32507 * 21 20 19 23 23 H 1.09004 * 109.47552 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47624 * 300.00374 * 1 2 3 25 25 H 1.09003 * 109.47227 * 60.00142 * 1 2 3 26 26 H 1.09003 * 109.47270 * 59.99802 * 3 2 1 27 27 H 1.08995 * 109.47236 * 300.00012 * 3 2 1 28 28 H 1.08999 * 109.47158 * 185.45665 * 6 4 3 29 29 H 1.09001 * 109.46950 * 305.45835 * 6 4 3 30 30 H 1.08998 * 109.46948 * 65.45661 * 6 4 3 31 31 H 0.97002 * 119.99373 * 180.02562 * 13 12 10 32 32 H 1.08997 * 110.43301 * 353.01899 * 18 9 7 33 33 H 1.09004 * 110.89871 * 85.04459 * 19 18 9 34 34 H 1.09001 * 110.76485 * 321.56833 * 19 18 9 35 35 H 1.08996 * 110.48439 * 279.18782 * 20 19 18 36 36 H 1.08993 * 110.48726 * 156.67525 * 20 19 18 37 37 H 1.09004 * 110.03161 * 95.61364 * 21 20 19 38 38 H 1.09003 * 110.02925 * 216.99229 * 21 20 19 39 39 H 1.09004 * 110.03323 * 119.28548 * 22 21 20 40 40 H 1.08996 * 110.03254 * 240.66570 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 1 4.1700 1.3952 -0.8409 6 6 4.3171 1.3919 1.3083 7 6 4.0818 3.4030 -0.1232 8 8 3.2726 4.2436 0.2081 9 7 5.2848 3.7774 -0.6020 10 6 6.1584 2.8327 -1.0753 11 1 7.1580 2.7708 -0.6711 12 6 5.7577 1.9547 -2.0751 13 7 4.6985 2.2276 -2.8033 14 14 6.7248 0.3867 -2.3837 15 1 6.1735 -0.7081 -1.5453 16 1 6.6188 0.0137 -3.8172 17 1 8.1510 0.6077 -2.0339 18 6 5.6588 5.1937 -0.6168 19 6 6.1750 5.6072 -2.0212 20 6 7.0503 6.8461 -1.7080 21 6 7.7449 6.4952 -0.3760 22 6 6.8602 5.4447 0.3178 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 1.8030 2.2371 0.8900 27 1 1.8031 2.2371 -0.8899 28 1 5.3859 1.6016 1.3515 29 1 3.8188 1.8688 2.1524 30 1 4.1562 0.3148 1.3527 31 1 4.4186 1.6145 -3.5010 32 1 4.8118 5.8141 -0.3241 33 1 5.3463 5.8755 -2.6766 34 1 6.7754 4.8115 -2.4620 35 1 6.4279 7.7333 -1.5915 36 1 7.7890 7.0000 -2.4945 37 1 8.7347 6.0813 -0.5687 38 1 7.8277 7.3853 0.2477 39 1 7.4206 4.5209 0.4618 40 1 6.5137 5.8244 1.2789 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125316607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:51:12 Heat of formation + Delta-G solvation = -53.129444 kcal Electronic energy + Delta-G solvation = -20124.166984 eV Core-core repulsion = 17257.456259 eV Total energy + Delta-G solvation = -2866.710726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.07077 -36.88984 -34.25106 -33.24007 -31.40516 -28.79018 -27.96668 -27.12063 -26.36248 -24.84030 -22.41981 -19.81358 -19.45005 -18.97683 -16.74616 -15.94118 -15.51481 -15.08523 -14.68711 -14.47163 -14.19318 -13.87335 -13.45219 -13.29855 -12.88658 -12.67642 -12.54133 -12.11240 -11.76783 -11.62677 -11.45276 -11.21613 -11.15915 -10.99374 -10.62953 -10.51677 -10.41777 -10.35946 -10.34575 -10.17305 -9.90627 -9.59894 -9.51510 -8.75921 -8.18092 -7.25740 -7.21321 -6.40237 -4.23447 2.11109 3.06169 3.14325 3.23512 3.24924 4.01140 4.15261 4.80922 4.92136 5.33929 5.34675 5.35156 5.37316 5.50753 5.63567 5.75312 5.87161 6.05262 6.08764 6.20088 6.24791 6.27852 6.30880 6.37816 6.45438 6.51435 6.52940 6.56958 6.70163 6.73307 6.93930 6.97908 7.08757 7.18546 7.29964 7.46338 8.01900 8.65588 8.93818 9.59387 10.03283 10.63982 Molecular weight = 271.13amu Principal moments of inertia in cm(-1) A = 0.019031 B = 0.007227 C = 0.005947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.935431 B = 3873.522600 C = 4706.873786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.275 6.275 3 C -0.048 4.048 4 C -0.087 4.087 5 H 0.126 0.874 6 C -0.132 4.132 7 C 0.529 3.471 8 O -0.613 6.613 9 N -0.443 5.443 10 C -0.342 4.342 11 H 0.080 0.920 12 C 0.056 3.944 13 N -0.851 5.851 14 Si 0.898 3.102 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.133 3.867 19 C -0.114 4.114 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.130 4.130 23 H 0.094 0.906 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.272 0.728 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 -0.397 3.201 3.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.049 6.049 3 C -0.196 4.196 4 C -0.109 4.109 5 H 0.144 0.856 6 C -0.190 4.190 7 C 0.317 3.683 8 O -0.499 6.499 9 N -0.162 5.162 10 C -0.470 4.470 11 H 0.098 0.902 12 C -0.152 4.152 13 N -0.485 5.485 14 Si 0.724 3.276 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.192 1.192 18 C 0.029 3.971 19 C -0.152 4.152 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.169 4.169 23 H 0.113 0.887 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.094 -0.920 3.188 3.319 hybrid contribution -0.426 0.215 -0.476 0.674 sum -0.332 -0.706 2.711 2.821 Atomic orbital electron populations 1.23309 0.95631 1.05599 1.04544 1.86690 1.05824 1.14320 1.98048 1.23225 1.00557 0.90972 1.04859 1.20986 0.91590 0.96528 1.01772 0.85607 1.21650 1.01542 1.00269 0.95554 1.20081 0.82303 0.89341 0.76526 1.90480 1.49946 1.54059 1.55431 1.43182 1.14845 1.03761 1.54374 1.19040 0.97457 1.11174 1.19340 0.90194 1.25544 0.96285 0.99559 0.93821 1.69992 1.25104 1.35355 1.18063 0.86381 0.80456 0.82781 0.78011 1.19392 1.20786 1.19224 1.21842 0.95560 0.85609 0.94098 1.22657 0.98753 0.96555 0.97279 1.22320 0.98703 0.98465 0.96806 1.22026 0.98791 0.98148 0.96473 1.22417 0.97441 0.98975 0.98073 0.88747 0.90958 0.90866 0.90456 0.90206 0.91562 0.93607 0.92332 0.91796 0.90390 0.92671 0.89646 0.92571 0.92490 0.92375 0.92922 0.90998 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 10.76 101.05 1.09 -0.55 16 2 S -0.27 -4.92 21.29 -107.50 -2.29 -7.21 16 3 C -0.05 -0.98 4.80 37.16 0.18 -0.80 16 4 C -0.09 -1.95 1.86 -91.77 -0.17 -2.12 16 5 H 0.13 3.06 4.37 -51.93 -0.23 2.83 16 6 C -0.13 -2.62 8.88 37.16 0.33 -2.29 16 7 C 0.53 13.30 6.17 -10.99 -0.07 13.23 16 8 O -0.61 -16.66 15.55 5.55 0.09 -16.57 16 9 N -0.44 -10.72 2.43 -105.78 -0.26 -10.98 16 10 C -0.34 -8.23 6.48 -14.93 -0.10 -8.33 16 11 H 0.08 1.90 7.11 -52.49 -0.37 1.52 16 12 C 0.06 1.35 3.21 -17.47 -0.06 1.29 16 13 N -0.85 -21.90 12.12 55.50 0.67 -21.23 16 14 Si 0.90 19.10 29.55 -169.99 -5.02 14.08 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 C 0.13 2.91 3.25 -66.09 -0.21 2.70 16 19 C -0.11 -2.32 6.40 -24.55 -0.16 -2.47 16 20 C -0.12 -2.02 6.82 -25.07 -0.17 -2.19 16 21 C -0.12 -1.82 6.80 -25.61 -0.17 -1.99 16 22 C -0.13 -2.42 6.43 -25.62 -0.16 -2.58 16 23 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 26 H 0.08 1.56 8.04 -51.92 -0.42 1.14 16 27 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.07 1.32 7.84 -51.93 -0.41 0.91 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.08 7.33 -51.93 -0.38 0.70 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.08 1.83 7.00 -51.93 -0.36 1.47 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.89 7.03 -51.93 -0.36 1.52 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.39 6.82 -51.93 -0.35 1.04 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 327.53 15.07 4.94 4.94 Total: -1.00 -27.25 327.53 -8.22 -35.48 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.67 Total: 7.62 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 0.32 Total: -6.12 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.42 Total: -32.21 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.09 Total: -16.57 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -2.29 Total: -7.21 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.25 -8.22 -35.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125316607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.651 kcal (2) G-P(sol) polarization free energy of solvation -27.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds