Wall clock time and date at job start Mon Mar 30 2020 19:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99975 * 2 1 4 4 H 1.48508 * 109.47225 * 270.00294 * 3 2 1 5 5 H 1.48494 * 109.47515 * 30.00030 * 3 2 1 6 6 H 1.48496 * 109.47141 * 150.00624 * 3 2 1 7 7 C 1.37874 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99537 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00292 * 179.97438 * 7 2 1 10 10 O 1.42100 * 106.39739 * 66.45903 * 9 7 2 11 11 O 1.42100 * 106.40116 * 293.54555 * 9 7 2 12 12 N 1.65596 * 107.21868 * 180.02562 * 9 7 2 13 13 C 1.46500 * 120.00120 * 65.00326 * 12 9 7 14 14 H 1.08998 * 109.47386 * 24.99611 * 13 12 9 15 15 C 1.53007 * 109.46800 * 264.99652 * 13 12 9 16 16 O 1.42895 * 109.47048 * 295.00000 * 15 13 12 17 17 C 1.50699 * 109.47098 * 144.99945 * 13 12 9 18 18 C 1.38647 * 120.78723 * 219.99496 * 17 13 12 19 19 C 1.38209 * 119.16168 * 179.74448 * 18 17 13 20 20 N 1.31875 * 120.76041 * 0.25720 * 19 18 17 21 21 C 1.31861 * 121.73030 * 0.02562 * 20 19 18 22 22 C 1.38204 * 120.76410 * 359.97438 * 21 20 19 23 23 H 0.97004 * 119.99464 * 359.97438 * 1 2 3 24 24 H 0.97001 * 119.99705 * 245.00056 * 12 9 7 25 25 H 1.08997 * 109.47025 * 55.00270 * 15 13 12 26 26 H 1.09002 * 109.46646 * 174.99635 * 15 13 12 27 27 H 0.96705 * 113.99311 * 180.02562 * 16 15 13 28 28 H 1.08002 * 120.42293 * 0.02952 * 18 17 13 29 29 H 1.07995 * 119.61831 * 180.23405 * 19 18 17 30 30 H 1.07997 * 119.61902 * 180.02562 * 21 20 19 31 31 H 1.08005 * 120.42170 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0014 9 16 3.7665 -1.1941 -0.0012 10 8 4.1682 -0.6500 1.2485 11 8 4.1673 -0.6493 -1.2509 12 7 4.2566 -2.7759 -0.0025 13 6 3.9609 -3.6335 -1.1528 14 1 3.8365 -3.0171 -2.0431 15 6 2.6717 -4.4142 -0.8888 16 8 2.8724 -5.3083 0.2077 17 6 5.0983 -4.5991 -1.3651 18 6 5.5366 -4.9093 -2.6434 19 6 6.5860 -5.7952 -2.7990 20 7 7.1647 -6.3462 -1.7499 21 6 6.7707 -6.0788 -0.5203 22 6 5.7276 -5.2026 -0.2870 23 1 -0.4849 0.8401 0.0004 24 1 4.7396 -3.1346 0.7585 25 1 1.8684 -3.7181 -0.6477 26 1 2.4037 -4.9843 -1.7783 27 1 2.0943 -5.8373 0.4312 28 1 5.0670 -4.4609 -3.5064 29 1 6.9358 -6.0392 -3.7911 30 1 7.2693 -6.5492 0.3142 31 1 5.4096 -4.9873 0.7224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192996607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:57:00 Heat of formation + Delta-G solvation = -90.719554 kcal Electronic energy + Delta-G solvation = -19222.220716 eV Core-core repulsion = 16016.787860 eV Total energy + Delta-G solvation = -3205.432855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 272.066 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.17755 -37.35104 -35.69596 -34.75489 -34.49891 -33.11184 -31.72462 -31.04595 -28.10719 -26.44523 -23.89131 -23.37501 -21.01889 -19.27226 -17.78191 -17.44693 -17.00510 -16.46118 -15.86965 -15.49338 -15.26579 -15.08927 -14.36505 -13.97326 -13.73971 -13.56535 -13.43701 -13.06073 -12.91219 -12.52675 -11.68082 -11.51208 -11.43672 -11.33542 -10.90332 -10.69095 -10.56623 -10.01623 -9.73023 -9.61725 -9.43246 -9.27169 -9.13597 -9.03907 -8.73057 -6.87553 -5.42771 1.23457 1.32946 2.00496 3.03179 3.13165 3.22982 3.88392 3.90082 4.21466 4.41440 4.52454 4.53684 4.65141 4.88840 5.17353 5.24337 5.28392 5.40192 5.54825 5.57076 5.74095 5.87324 5.90395 6.05523 6.13227 6.33161 6.62493 6.79077 7.40049 7.63084 7.80985 8.03398 8.12047 8.63214 10.23865 Molecular weight = 272.07amu Principal moments of inertia in cm(-1) A = 0.032024 B = 0.006190 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.128195 B = 4521.998319 C = 4797.601618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.154 3.846 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.221 1.221 7 C -1.017 5.017 8 H 0.125 0.875 9 S 2.672 3.328 10 O -1.005 7.005 11 O -1.011 7.011 12 N -1.111 6.111 13 C 0.199 3.801 14 H 0.117 0.883 15 C 0.054 3.946 16 O -0.565 6.565 17 C -0.031 4.031 18 C -0.167 4.167 19 C 0.092 3.908 20 N -0.492 5.492 21 C 0.090 3.910 22 C -0.138 4.138 23 H 0.281 0.719 24 H 0.408 0.592 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.376 0.624 28 H 0.137 0.863 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 -10.573 -3.143 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.066 4.066 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.143 1.143 7 C -1.151 5.151 8 H 0.143 0.857 9 S 2.774 3.226 10 O -0.996 6.996 11 O -1.001 7.001 12 N -0.866 5.866 13 C 0.090 3.910 14 H 0.135 0.865 15 C -0.025 4.025 16 O -0.370 6.370 17 C -0.040 4.040 18 C -0.188 4.188 19 C -0.065 4.065 20 N -0.201 5.201 21 C -0.066 4.066 22 C -0.159 4.159 23 H 0.092 0.908 24 H 0.241 0.759 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.222 0.778 28 H 0.155 0.845 29 H 0.171 0.829 30 H 0.170 0.830 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.415 -9.973 -3.441 12.895 hybrid contribution -1.673 0.646 0.454 1.850 sum 5.742 -9.326 -2.987 11.352 Atomic orbital electron populations 1.69977 1.06551 1.29144 1.39395 1.24411 0.94792 0.98802 0.88558 0.87865 0.83606 0.84555 0.81861 1.16972 1.17876 1.14277 1.30536 1.15393 1.02164 1.66995 0.85728 1.01481 0.77446 0.70316 0.73363 1.93483 1.85511 1.75637 1.44928 1.93412 1.85083 1.75923 1.45641 1.55566 1.73965 1.30837 1.26238 1.19699 0.90721 0.90150 0.90424 0.86490 1.22929 0.97634 0.92757 0.89207 1.86435 1.41082 1.56940 1.52557 1.20366 0.95107 0.95191 0.93379 1.22079 0.98940 1.00198 0.97551 1.22652 0.92767 0.93349 0.97742 1.67621 1.28993 1.24021 0.99512 1.22706 0.94277 0.95298 0.94336 1.21965 0.96337 0.97140 1.00421 0.90833 0.75863 0.90226 0.93149 0.77793 0.84537 0.82940 0.82991 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.77 13.96 55.43 0.77 -22.00 16 2 C 0.15 4.26 5.47 -17.82 -0.10 4.16 16 3 Si 0.80 20.10 26.54 -169.99 -4.51 15.59 16 4 H -0.25 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.25 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.22 -5.69 5.61 56.52 0.32 -5.38 16 7 C -1.02 -26.76 10.09 30.60 0.31 -26.45 16 8 H 0.12 3.20 5.77 -52.48 -0.30 2.90 16 9 S 2.67 64.39 4.22 -107.50 -0.45 63.93 16 10 O -1.01 -26.58 16.02 -57.17 -0.92 -27.50 16 11 O -1.01 -25.96 16.17 -57.17 -0.92 -26.88 16 12 N -1.11 -20.74 5.38 -5.88 -0.03 -20.77 16 13 C 0.20 3.22 2.97 -69.08 -0.21 3.01 16 14 H 0.12 1.91 7.40 -51.93 -0.38 1.52 16 15 C 0.05 0.79 6.87 37.16 0.26 1.05 16 16 O -0.57 -7.59 12.09 -35.23 -0.43 -8.01 16 17 C -0.03 -0.45 4.85 -104.32 -0.51 -0.95 16 18 C -0.17 -2.13 9.78 -39.44 -0.39 -2.52 16 19 C 0.09 1.13 11.18 -17.54 -0.20 0.93 16 20 N -0.49 -6.76 10.36 -13.25 -0.14 -6.89 16 21 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 22 C -0.14 -1.89 8.26 -39.44 -0.33 -2.22 16 23 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.41 6.85 7.19 -34.46 -0.25 6.60 16 25 H 0.08 1.33 5.63 -51.93 -0.29 1.04 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.38 3.53 9.12 45.56 0.42 3.94 16 28 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.14 1.80 6.73 -52.48 -0.35 1.44 16 LS Contribution 277.67 15.07 4.18 4.18 Total: -1.00 -33.48 277.67 -5.87 -39.35 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -2.08 Total: 11.02 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -1.35 Total: -22.02 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.60 Total: -49.66 kcal Atomic # 8 Polarization: -60.13 SS G_CDS: -2.27 Total: -62.39 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.51 Total: 15.59 kcal Atomic # 16 Polarization: 64.39 SS G_CDS: -0.45 Total: 63.93 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.48 -5.87 -39.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192996607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.374 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds