Wall clock time and date at job start Mon Mar 30 2020 19:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36818 * 119.99840 * 2 1 4 4 H 1.08000 * 120.00383 * 147.13282 * 3 2 1 5 5 C 1.39076 * 120.00264 * 327.12862 * 3 2 1 6 6 N 1.31339 * 120.00399 * 163.08873 * 5 3 2 7 7 Si 1.86808 * 119.99575 * 343.09689 * 5 3 2 8 8 H 1.48501 * 109.47376 * 91.27443 * 7 5 3 9 9 H 1.48500 * 109.46726 * 211.27597 * 7 5 3 10 10 H 1.48503 * 109.46811 * 331.27163 * 7 5 3 11 11 C 1.34779 * 120.00168 * 179.71615 * 2 1 3 12 12 O 1.21596 * 120.00014 * 175.05653 * 11 2 1 13 13 C 1.47775 * 120.00035 * 355.06368 * 11 2 1 14 14 C 1.39558 * 119.66768 * 177.21504 * 13 11 2 15 15 C 1.38284 * 119.12853 * 179.97438 * 14 13 11 16 16 C 1.39254 * 118.45569 * 359.97438 * 15 14 13 17 17 O 1.35736 * 120.37352 * 180.02562 * 16 15 14 18 18 C 1.42901 * 116.99810 * 179.97438 * 17 16 15 19 19 F 1.39897 * 109.47692 * 300.00787 * 18 17 16 20 20 F 1.39900 * 109.46850 * 60.00642 * 18 17 16 21 21 C 1.39226 * 119.25184 * 359.97438 * 16 15 14 22 22 N 1.31389 * 120.81102 * 359.74765 * 21 16 15 23 23 H 1.09004 * 109.46960 * 243.39261 * 1 2 3 24 24 H 1.08995 * 109.47228 * 3.39352 * 1 2 3 25 25 H 1.08998 * 109.46841 * 123.39516 * 1 2 3 26 26 H 0.97002 * 119.99938 * 180.02562 * 6 5 3 27 27 H 1.08002 * 120.43439 * 359.94951 * 14 13 11 28 28 H 1.08008 * 120.77518 * 180.02562 * 15 14 13 29 29 H 1.08997 * 109.46823 * 180.02562 * 18 17 16 30 30 H 1.07997 * 119.59227 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1849 0.0000 4 1 3.0994 1.2599 0.5076 5 6 1.6207 2.2929 -0.6537 6 7 2.0826 3.4936 -0.3892 7 14 0.2537 2.0734 -1.9079 8 1 -1.0628 2.1897 -1.2307 9 1 0.3674 3.1226 -2.9526 10 1 0.3701 0.7334 -2.5374 11 6 2.1389 -1.1672 0.0058 12 8 3.3515 -1.1696 -0.0850 13 6 1.4042 -2.4440 0.1222 14 6 2.1034 -3.6507 0.0689 15 6 1.4047 -4.8389 0.1795 16 6 0.0227 -4.7835 0.3414 17 8 -0.7014 -5.9260 0.4545 18 6 -2.1140 -5.7851 0.6184 19 9 -2.3780 -5.0558 1.7827 20 9 -2.6465 -5.1103 -0.4854 21 6 -0.6077 -3.5430 0.3869 22 7 0.0856 -2.4316 0.2842 23 1 -0.3633 -0.4603 0.9189 24 1 -0.3633 1.0258 -0.0608 25 1 -0.3633 -0.5656 -0.8580 26 1 1.7138 4.2664 -0.8449 27 1 3.1759 -3.6563 -0.0576 28 1 1.9191 -5.7879 0.1422 29 1 -2.5708 -6.7716 0.6966 30 1 -1.6793 -3.4936 0.5118 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355280421.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:53:12 Heat of formation + Delta-G solvation = -108.027821 kcal Electronic energy + Delta-G solvation = -20860.146656 eV Core-core repulsion = 17100.122872 eV Total energy + Delta-G solvation = -3760.023785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.64125 -47.63295 -40.59714 -38.87050 -37.49809 -34.93909 -32.54602 -31.92957 -30.53903 -26.83218 -26.34707 -25.32623 -23.79860 -22.94754 -19.84805 -19.31215 -18.63860 -18.20485 -17.15933 -16.64849 -16.34348 -15.82031 -15.39608 -15.12682 -14.52610 -14.45347 -14.16975 -13.94295 -13.79113 -13.42148 -13.26470 -13.17051 -12.77473 -12.55837 -12.28421 -12.23067 -11.95424 -11.62971 -10.64232 -10.38250 -9.93015 -9.76518 -9.34610 -9.22481 -8.57798 -8.55787 -7.81337 -6.50152 -3.98798 0.87361 1.28370 2.24649 3.02990 3.16190 3.18872 3.25967 3.38259 3.96051 4.07715 4.23972 4.26482 4.36373 4.49781 4.59212 4.93705 5.01009 5.16972 5.38536 5.69636 5.79822 6.12099 6.12316 6.32168 6.38217 6.63173 6.81070 7.43053 7.92784 8.16619 8.44426 8.85537 9.21006 9.71373 10.60141 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.027516 B = 0.005506 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.356833 B = 5083.876980 C = 5743.945356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.431 5.431 3 C -0.306 4.306 4 H 0.113 0.887 5 C 0.056 3.944 6 N -0.853 5.853 7 Si 0.893 3.107 8 H -0.272 1.272 9 H -0.288 1.288 10 H -0.263 1.263 11 C 0.488 3.512 12 O -0.571 6.571 13 C 0.088 3.912 14 C -0.092 4.092 15 C -0.095 4.095 16 C 0.041 3.959 17 O -0.317 6.317 18 C 0.410 3.590 19 F -0.197 7.197 20 F -0.197 7.197 21 C 0.036 3.964 22 N -0.429 5.429 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.278 0.722 27 H 0.156 0.844 28 H 0.147 0.853 29 H 0.183 0.817 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.837 -18.843 1.149 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.149 5.149 3 C -0.433 4.433 4 H 0.131 0.869 5 C -0.152 4.152 6 N -0.489 5.489 7 Si 0.720 3.280 8 H -0.199 1.199 9 H -0.215 1.215 10 H -0.188 1.188 11 C 0.277 3.723 12 O -0.455 6.455 13 C -0.051 4.051 14 C -0.113 4.113 15 C -0.121 4.121 16 C -0.005 4.005 17 O -0.233 6.233 18 C 0.320 3.680 19 F -0.179 7.179 20 F -0.179 7.179 21 C -0.124 4.124 22 N -0.142 5.142 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.174 0.826 28 H 0.164 0.836 29 H 0.199 0.801 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.604 -17.926 1.106 20.857 hybrid contribution -0.733 -0.585 -0.648 1.140 sum -11.337 -18.511 0.458 21.712 Atomic orbital electron populations 1.22278 0.81860 1.00763 1.02353 1.43662 1.05199 1.05436 1.60577 1.19313 1.07213 0.84134 1.32682 0.86902 1.25443 0.98125 0.94728 0.96857 1.69669 1.41755 0.98114 1.39362 0.86801 0.81127 0.78737 0.81284 1.19853 1.21511 1.18761 1.17427 0.86965 0.82027 0.85921 1.90657 1.12793 1.85829 1.56173 1.21792 0.89277 0.95704 0.98306 1.21980 1.02307 0.90432 0.96583 1.20839 0.90112 0.99783 1.01326 1.20097 0.92528 0.85700 1.02142 1.86546 1.18313 1.30851 1.87598 1.23402 0.79888 0.92635 0.72119 1.93118 1.93514 1.81087 1.50182 1.93118 1.86246 1.83525 1.55034 1.23332 1.00894 0.86939 1.01274 1.68223 1.07850 1.28644 1.09484 0.90897 0.91797 0.92600 0.91154 0.82597 0.83553 0.80105 0.82282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.57 6.73 59.85 0.40 1.97 16 2 N -0.43 -11.20 2.69 -123.31 -0.33 -11.53 16 3 C -0.31 -8.85 9.49 -15.02 -0.14 -8.99 16 4 H 0.11 3.60 7.86 -52.49 -0.41 3.19 16 5 C 0.06 1.56 5.28 -17.45 -0.09 1.47 16 6 N -0.85 -24.55 13.95 55.50 0.77 -23.78 16 7 Si 0.89 21.14 24.46 -169.99 -4.16 16.98 16 8 H -0.27 -5.98 6.58 56.52 0.37 -5.61 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.26 -6.29 6.85 56.52 0.39 -5.91 16 11 C 0.49 12.25 7.60 -12.36 -0.09 12.16 16 12 O -0.57 -15.86 16.16 5.28 0.09 -15.77 16 13 C 0.09 1.78 6.66 -83.03 -0.55 1.23 16 14 C -0.09 -1.53 9.62 -39.07 -0.38 -1.91 16 15 C -0.09 -1.28 10.11 -39.19 -0.40 -1.67 16 16 C 0.04 0.57 6.51 -38.84 -0.25 0.31 16 17 O -0.32 -3.38 10.43 -18.91 -0.20 -3.57 16 18 C 0.41 3.19 5.98 101.05 0.60 3.79 16 19 F -0.20 -1.94 15.59 2.25 0.04 -1.90 16 20 F -0.20 -1.95 15.59 2.25 0.04 -1.91 16 21 C 0.04 0.56 9.44 -17.37 -0.16 0.39 16 22 N -0.43 -8.08 5.99 -9.69 -0.06 -8.13 16 23 H 0.07 1.49 6.84 -51.93 -0.36 1.13 16 24 H 0.06 1.44 3.97 -51.93 -0.21 1.23 16 25 H 0.06 1.18 6.77 -51.93 -0.35 0.83 16 26 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.16 2.48 7.64 -52.49 -0.40 2.08 16 28 H 0.15 1.48 8.06 -52.48 -0.42 1.05 16 29 H 0.18 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.16 2.19 5.11 -52.49 -0.27 1.92 16 LS Contribution 265.54 15.07 4.00 4.00 Total: -1.00 -33.37 265.54 -2.90 -36.27 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -2.02 Total: 0.60 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -1.06 Total: 8.75 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.38 Total: -43.44 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.11 Total: -19.34 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.07 Total: -3.81 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.16 Total: 16.98 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.37 -2.90 -36.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355280421.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.760 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds