Wall clock time and date at job start Mon Mar 30 2020 19:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.37776 * 120.00292 * 16.92083 * 3 2 1 5 5 C 1.46447 * 119.99922 * 352.01947 * 4 3 2 6 6 C 1.40246 * 120.13263 * 326.21897 * 5 4 3 7 7 C 1.36598 * 119.85903 * 179.70989 * 6 5 4 8 8 C 1.39116 * 120.13714 * 0.56484 * 7 6 5 9 9 O 1.35678 * 119.86419 * 179.73585 * 8 7 6 10 10 C 1.39116 * 120.27081 * 359.70932 * 8 7 6 11 11 C 1.36604 * 120.13613 * 0.02562 * 10 8 7 12 12 C 1.47130 * 119.99782 * 196.92357 * 3 2 1 13 13 O 1.21654 * 119.99748 * 179.97438 * 12 3 2 14 14 N 1.34774 * 120.00288 * 359.97438 * 12 3 2 15 15 C 1.46501 * 120.00451 * 180.02562 * 14 12 3 16 16 C 1.50690 * 109.47365 * 179.97438 * 15 14 12 17 17 H 1.08008 * 120.00088 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00126 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00178 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00184 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47073 * 90.00121 * 20 18 16 22 22 H 1.48502 * 109.47360 * 209.99931 * 20 18 16 23 23 H 1.48495 * 109.47186 * 330.00202 * 20 18 16 24 24 H 1.07995 * 120.00237 * 172.29786 * 4 3 2 25 25 H 1.08004 * 120.07019 * 359.97438 * 6 5 4 26 26 H 1.07996 * 119.93139 * 180.29548 * 7 6 5 27 27 H 0.96704 * 113.99334 * 269.97464 * 9 8 7 28 28 H 1.08001 * 119.93389 * 179.97438 * 10 8 7 29 29 H 1.08004 * 120.06804 * 180.02562 * 11 10 8 30 30 H 0.97001 * 119.99789 * 359.97438 * 14 12 3 31 31 H 1.08999 * 109.46850 * 299.99888 * 15 14 12 32 32 H 1.08998 * 109.47190 * 59.99467 * 15 14 12 33 33 H 0.96995 * 120.00505 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2575 -1.1405 -0.3473 5 6 2.5365 -2.3996 -0.5462 6 6 1.4020 -2.6907 0.2252 7 6 0.7302 -3.8641 0.0309 8 6 1.1762 -4.7748 -0.9215 9 8 0.5079 -5.9410 -1.1061 10 6 2.3043 -4.4943 -1.6858 11 6 2.9814 -3.3218 -1.5045 12 6 3.3031 1.2200 0.3709 13 8 4.5196 1.2204 0.3714 14 7 2.6287 2.3365 0.7102 15 6 3.3606 3.5508 1.0790 16 6 2.3809 4.6464 1.4113 17 1 1.3191 4.4574 1.3532 18 6 2.8398 5.8903 1.7895 19 7 4.1327 6.1208 1.8598 20 14 1.6253 7.2487 2.2008 21 1 1.3021 7.2019 3.6494 22 1 2.2254 8.5662 1.8699 23 1 0.3830 7.0581 1.4100 24 1 4.3301 -1.1076 -0.4684 25 1 1.0576 -1.9866 0.9683 26 1 -0.1463 -4.0873 0.6209 27 1 0.8232 -6.6671 -0.5507 28 1 2.6460 -5.2054 -2.4233 29 1 3.8568 -3.1050 -2.0987 30 1 1.6587 2.3362 0.7095 31 1 3.9873 3.3476 1.9473 32 1 3.9872 3.8650 0.2443 33 1 4.4556 6.9957 2.1263 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787629607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:55:43 Heat of formation + Delta-G solvation = -10.187570 kcal Electronic energy + Delta-G solvation = -18835.820553 eV Core-core repulsion = 15634.268969 eV Total energy + Delta-G solvation = -3201.551583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.095 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.27513 -39.17645 -37.55284 -36.43803 -34.40503 -33.44588 -32.39109 -31.58849 -29.59757 -27.31482 -24.69109 -23.26073 -22.60426 -21.54344 -20.61772 -18.88430 -18.47296 -16.76044 -16.23582 -15.90338 -15.60208 -15.17478 -14.90498 -14.67415 -14.51993 -14.16327 -13.98275 -13.36919 -13.11164 -13.03807 -12.68213 -12.62901 -12.14582 -12.07503 -11.95404 -11.89482 -11.01307 -10.91493 -10.83110 -10.35718 -10.02885 -9.48251 -9.47363 -9.39962 -8.79457 -8.48382 -7.98243 -6.19800 -4.26743 0.02244 1.02330 1.32759 2.64512 2.94014 3.23865 3.24081 3.30225 3.33109 3.74698 3.76759 3.87373 3.93571 4.31533 4.45771 4.53543 4.58031 4.90829 5.08967 5.16809 5.30810 5.43201 5.56346 5.68330 5.70357 5.98822 6.01308 6.16123 6.35176 7.20480 7.22887 7.24762 7.44054 7.44430 7.60033 7.91324 8.46455 8.66943 8.90403 9.39584 10.90289 Molecular weight = 272.09amu Principal moments of inertia in cm(-1) A = 0.041171 B = 0.003250 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.924111 B = 8612.905969 C = 9173.018387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.249 3.751 3 C -0.105 4.105 4 C 0.041 3.959 5 C -0.099 4.099 6 C -0.076 4.076 7 C -0.145 4.145 8 C 0.120 3.880 9 O -0.499 6.499 10 C -0.149 4.149 11 C -0.069 4.069 12 C 0.552 3.448 13 O -0.543 6.543 14 N -0.700 5.700 15 C 0.248 3.752 16 C -0.546 4.546 17 H 0.063 0.937 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 H 0.166 0.834 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.393 0.607 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.391 0.609 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 -22.321 -4.830 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.066 4.066 3 C -0.111 4.111 4 C 0.016 3.984 5 C -0.100 4.100 6 C -0.095 4.095 7 C -0.163 4.163 8 C 0.076 3.924 9 O -0.310 6.310 10 C -0.168 4.168 11 C -0.087 4.087 12 C 0.335 3.665 13 O -0.423 6.423 14 N -0.346 5.346 15 C 0.128 3.872 16 C -0.584 4.584 17 H 0.081 0.919 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.197 1.197 24 H 0.184 0.816 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.250 0.750 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.224 0.776 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.615 -21.737 -5.167 22.634 hybrid contribution -0.479 0.548 0.610 0.950 sum -4.095 -21.190 -4.557 22.058 Atomic orbital electron populations 1.81264 1.11686 1.07507 1.08205 1.25638 0.92804 0.93779 0.94332 1.18819 0.84685 0.97483 1.10134 1.23039 1.00683 0.88383 0.86260 1.19143 0.96703 0.95090 0.99022 1.21264 0.93052 0.96510 0.98630 1.21129 1.01224 0.95113 0.98833 1.18778 0.91239 0.87737 0.94694 1.84762 1.60236 1.19526 1.66430 1.21146 0.95361 0.98832 1.01449 1.21057 0.99320 0.92111 0.96204 1.17557 0.87180 0.82555 0.79159 1.90806 1.12455 1.84033 1.55030 1.46483 1.10367 1.12408 1.65377 1.19226 0.92420 0.79051 0.96472 1.21210 0.92991 0.96042 1.48190 0.91926 1.24922 0.95450 0.98526 0.94925 1.69960 1.12556 1.23322 1.46352 0.86412 0.80876 0.80856 0.78800 1.20399 1.20916 1.19716 0.81647 0.85183 0.84978 0.75039 0.84810 0.84331 0.77612 0.94910 0.94896 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.62 18.22 41.84 0.76 -5.86 16 2 C 0.25 3.72 10.59 -22.47 -0.24 3.49 16 3 C -0.10 -1.51 5.81 -104.53 -0.61 -2.12 16 4 C 0.04 0.46 9.43 -36.45 -0.34 0.11 16 5 C -0.10 -1.02 5.51 -105.09 -0.58 -1.59 16 6 C -0.08 -0.82 8.25 -39.42 -0.33 -1.15 16 7 C -0.14 -1.41 9.92 -39.85 -0.40 -1.81 16 8 C 0.12 1.07 6.72 -38.93 -0.26 0.81 16 9 O -0.50 -3.83 13.48 -18.74 -0.25 -4.08 16 10 C -0.15 -1.19 9.92 -39.85 -0.40 -1.59 16 11 C -0.07 -0.57 9.75 -39.42 -0.38 -0.95 16 12 C 0.55 10.50 7.75 -12.65 -0.10 10.40 16 13 O -0.54 -11.79 16.31 5.23 0.09 -11.71 16 14 N -0.70 -14.80 5.50 -62.66 -0.34 -15.15 16 15 C 0.25 6.45 5.43 -5.20 -0.03 6.42 16 16 C -0.55 -14.83 9.28 -34.45 -0.32 -15.15 16 17 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 18 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 19 N -0.88 -25.67 13.29 55.43 0.74 -24.94 16 20 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 24 H 0.17 1.63 7.61 -52.49 -0.40 1.23 16 25 H 0.13 1.50 5.97 -52.48 -0.31 1.19 16 26 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.39 1.01 9.06 45.56 0.41 1.42 16 28 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 30 H 0.39 7.67 7.20 -40.82 -0.29 7.38 16 31 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -32.90 307.67 -5.71 -38.61 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -2.24 Total: 3.98 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -4.07 Total: -1.42 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 1.15 Total: -45.94 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.17 Total: -15.78 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.90 -5.71 -38.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787629607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.420 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds