Wall clock time and date at job start Mon Mar 30 2020 19:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.37776 * 120.00292 * 16.92083 * 3 2 1 5 5 C 1.46447 * 119.99922 * 352.01947 * 4 3 2 6 6 C 1.40246 * 120.13263 * 326.21897 * 5 4 3 7 7 C 1.36598 * 119.85903 * 179.70989 * 6 5 4 8 8 C 1.39116 * 120.13714 * 0.56484 * 7 6 5 9 9 O 1.35678 * 119.86419 * 179.73585 * 8 7 6 10 10 C 1.39116 * 120.27081 * 359.70932 * 8 7 6 11 11 C 1.36604 * 120.13613 * 0.02562 * 10 8 7 12 12 C 1.47130 * 119.99782 * 196.92357 * 3 2 1 13 13 O 1.21654 * 119.99748 * 179.97438 * 12 3 2 14 14 N 1.34774 * 120.00288 * 359.97438 * 12 3 2 15 15 C 1.46501 * 120.00451 * 180.02562 * 14 12 3 16 16 C 1.50690 * 109.47365 * 179.97438 * 15 14 12 17 17 H 1.08008 * 120.00088 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00126 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00178 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00184 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47073 * 90.00121 * 20 18 16 22 22 H 1.48502 * 109.47360 * 209.99931 * 20 18 16 23 23 H 1.48495 * 109.47186 * 330.00202 * 20 18 16 24 24 H 1.07995 * 120.00237 * 172.29786 * 4 3 2 25 25 H 1.08004 * 120.07019 * 359.97438 * 6 5 4 26 26 H 1.07996 * 119.93139 * 180.29548 * 7 6 5 27 27 H 0.96704 * 113.99334 * 269.97464 * 9 8 7 28 28 H 1.08001 * 119.93389 * 179.97438 * 10 8 7 29 29 H 1.08004 * 120.06804 * 180.02562 * 11 10 8 30 30 H 0.97001 * 119.99789 * 359.97438 * 14 12 3 31 31 H 1.08999 * 109.46850 * 299.99888 * 15 14 12 32 32 H 1.08998 * 109.47190 * 59.99467 * 15 14 12 33 33 H 0.96995 * 120.00505 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2575 -1.1405 -0.3473 5 6 2.5365 -2.3996 -0.5462 6 6 1.4020 -2.6907 0.2252 7 6 0.7302 -3.8641 0.0309 8 6 1.1762 -4.7748 -0.9215 9 8 0.5079 -5.9410 -1.1061 10 6 2.3043 -4.4943 -1.6858 11 6 2.9814 -3.3218 -1.5045 12 6 3.3031 1.2200 0.3709 13 8 4.5196 1.2204 0.3714 14 7 2.6287 2.3365 0.7102 15 6 3.3606 3.5508 1.0790 16 6 2.3809 4.6464 1.4113 17 1 1.3191 4.4574 1.3532 18 6 2.8398 5.8903 1.7895 19 7 4.1327 6.1208 1.8598 20 14 1.6253 7.2487 2.2008 21 1 1.3021 7.2019 3.6494 22 1 2.2254 8.5662 1.8699 23 1 0.3830 7.0581 1.4100 24 1 4.3301 -1.1076 -0.4684 25 1 1.0576 -1.9866 0.9683 26 1 -0.1463 -4.0873 0.6209 27 1 0.8232 -6.6671 -0.5507 28 1 2.6460 -5.2054 -2.4233 29 1 3.8568 -3.1050 -2.0987 30 1 1.6587 2.3362 0.7095 31 1 3.9873 3.3476 1.9473 32 1 3.9872 3.8650 0.2443 33 1 4.4556 6.9957 2.1263 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787629607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:55:43 Heat of formation + Delta-G solvation = -34.412606 kcal Electronic energy + Delta-G solvation = -18836.871029 eV Core-core repulsion = 15634.268969 eV Total energy + Delta-G solvation = -3202.602060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14155 -40.52219 -38.46951 -37.45334 -36.23555 -34.51983 -34.36256 -32.28714 -30.68905 -29.09962 -25.89916 -24.54984 -23.76111 -22.46578 -22.13914 -20.05284 -19.47540 -18.24962 -17.53259 -16.89943 -16.81969 -16.35476 -16.27939 -16.22720 -15.82013 -15.17956 -14.89813 -14.65488 -14.43245 -14.16074 -14.03723 -13.86370 -13.64931 -13.42954 -12.99124 -12.90715 -12.87066 -12.74334 -12.26569 -11.51553 -11.48103 -11.11700 -10.92892 -10.82585 -10.17415 -9.93201 -9.28836 -8.30950 -6.46710 -0.90936 0.33276 0.48346 1.41412 1.42962 1.46676 1.54370 1.59856 2.25854 2.39624 2.46068 2.67234 2.79026 3.03889 3.20877 3.47387 3.75261 3.86503 4.06676 4.25099 4.33680 4.66710 4.71014 4.80023 4.96089 5.09885 5.22818 5.25482 5.32198 5.38565 5.40404 5.59482 5.71096 5.82809 6.29340 6.60802 6.75205 6.80024 7.17004 7.31345 8.80783 Molecular weight = 272.09amu Principal moments of inertia in cm(-1) A = 0.041171 B = 0.003250 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.924111 B = 8612.905969 C = 9173.018387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.267 3.733 3 C -0.143 4.143 4 C 0.102 3.898 5 C -0.127 4.127 6 C -0.082 4.082 7 C -0.162 4.162 8 C 0.132 3.868 9 O -0.508 6.508 10 C -0.152 4.152 11 C -0.051 4.051 12 C 0.559 3.441 13 O -0.575 6.575 14 N -0.707 5.707 15 C 0.266 3.734 16 C -0.563 4.563 17 H 0.072 0.928 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.978 3.022 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.263 1.263 24 H 0.185 0.815 25 H 0.116 0.884 26 H 0.136 0.864 27 H 0.417 0.583 28 H 0.161 0.839 29 H 0.170 0.830 30 H 0.398 0.602 31 H 0.001 0.999 32 H 0.002 0.998 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.183 -24.323 -5.824 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.046 4.046 3 C -0.150 4.150 4 C 0.079 3.921 5 C -0.127 4.127 6 C -0.101 4.101 7 C -0.180 4.180 8 C 0.087 3.913 9 O -0.323 6.323 10 C -0.170 4.170 11 C -0.069 4.069 12 C 0.347 3.653 13 O -0.457 6.457 14 N -0.354 5.354 15 C 0.144 3.856 16 C -0.600 4.600 17 H 0.090 0.910 18 C -0.189 4.189 19 N -0.562 5.562 20 Si 0.802 3.198 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.187 1.187 24 H 0.203 0.797 25 H 0.134 0.866 26 H 0.154 0.846 27 H 0.278 0.722 28 H 0.178 0.822 29 H 0.187 0.813 30 H 0.233 0.767 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.270 -23.797 -6.159 24.949 hybrid contribution -0.225 0.835 0.852 1.215 sum -4.496 -22.961 -5.307 23.992 Atomic orbital electron populations 1.81262 1.12253 1.08243 1.09926 1.25554 0.92643 0.93091 0.93334 1.18118 0.84238 0.96509 1.16095 1.23393 1.01349 0.87471 0.79923 1.19150 0.97367 0.95250 1.00980 1.21253 0.93364 0.96756 0.98733 1.21245 1.01720 0.95249 0.99835 1.18937 0.90899 0.87849 0.93615 1.84699 1.60552 1.19861 1.67154 1.21456 0.94799 0.99177 1.01592 1.21396 0.99591 0.91032 0.94892 1.18006 0.86925 0.82985 0.77427 1.90775 1.13920 1.84776 1.56273 1.46234 1.10518 1.11987 1.66690 1.18662 0.92055 0.80957 0.93920 1.21562 0.93578 0.96665 1.48228 0.90972 1.25925 0.97339 1.01186 0.94461 1.70092 1.14707 1.24204 1.47165 0.85252 0.78434 0.77313 0.78830 1.19545 1.20386 1.18705 0.79744 0.86597 0.84568 0.72242 0.82172 0.81299 0.76746 0.98084 0.98050 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.32 18.22 19.00 0.35 -13.97 16 2 C 0.27 8.04 10.59 88.33 0.94 8.98 16 3 C -0.14 -4.10 5.81 -19.81 -0.12 -4.22 16 4 C 0.10 2.12 9.43 24.30 0.23 2.35 16 5 C -0.13 -2.30 5.51 -20.17 -0.11 -2.41 16 6 C -0.08 -1.69 8.25 22.37 0.18 -1.51 16 7 C -0.16 -2.90 9.92 22.10 0.22 -2.68 16 8 C 0.13 1.96 6.72 22.69 0.15 2.12 16 9 O -0.51 -6.19 13.48 -89.96 -1.21 -7.40 16 10 C -0.15 -1.82 9.92 22.10 0.22 -1.60 16 11 C -0.05 -0.64 9.75 22.37 0.22 -0.42 16 12 C 0.56 21.86 7.75 86.58 0.67 22.53 16 13 O -0.58 -25.64 16.31 -4.20 -0.07 -25.71 16 14 N -0.71 -31.10 5.50 -470.40 -2.59 -33.69 16 15 C 0.27 14.51 5.43 85.63 0.46 14.98 16 16 C -0.56 -31.28 9.28 25.60 0.24 -31.04 16 17 H 0.07 3.78 7.60 -2.91 -0.02 3.76 16 18 C 0.01 0.63 5.46 84.65 0.46 1.09 16 19 N -0.92 -54.95 13.29 21.45 0.28 -54.67 16 20 Si 0.98 43.07 29.54 68.60 2.03 45.09 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 24 H 0.19 3.13 7.61 -2.91 -0.02 3.11 16 25 H 0.12 2.69 5.97 -2.91 -0.02 2.67 16 26 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 27 H 0.42 0.75 9.06 -74.05 -0.67 0.07 16 28 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 29 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 30 H 0.40 16.16 7.20 -92.71 -0.67 15.49 16 31 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -73.19 307.67 2.40 -70.79 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -0.16 Total: 11.38 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 3.77 Total: 8.17 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -1.96 Total: -102.33 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -1.28 Total: -33.11 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -73.19 2.40 -70.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787629607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.380 kcal (2) G-P(sol) polarization free energy of solvation -73.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds