Wall clock time and date at job start Mon Mar 30 2020 19:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86795 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47199 * 275.41488 * 3 2 1 5 5 H 1.48504 * 109.46968 * 35.41270 * 3 2 1 6 6 H 1.48495 * 109.47046 * 155.41251 * 3 2 1 7 7 C 1.40002 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00425 * 341.72750 * 7 2 1 9 9 C 1.41019 * 119.99441 * 161.73007 * 7 2 1 10 10 C 1.40937 * 120.11258 * 330.10969 * 9 7 2 11 11 C 1.36245 * 119.87778 * 179.70438 * 10 9 7 12 12 C 1.39964 * 120.11350 * 0.27905 * 11 10 9 13 13 C 1.47936 * 119.88204 * 179.97438 * 12 11 10 14 14 C 1.39623 * 120.16133 * 129.99725 * 13 12 11 15 15 C 1.37887 * 119.87871 * 180.02562 * 14 13 12 16 16 C 1.38449 * 120.20724 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.84016 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47388 * 90.00117 * 17 16 15 19 19 C 1.38295 * 120.32453 * 0.02562 * 16 15 14 20 20 C 1.38227 * 120.11682 * 359.72036 * 19 16 15 21 21 F 1.35103 * 120.10671 * 180.27791 * 20 19 16 22 22 C 1.39963 * 120.24017 * 0.02562 * 12 11 10 23 23 C 1.36237 * 120.11470 * 0.02562 * 22 12 11 24 24 H 0.97003 * 120.00443 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.06859 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.94364 * 180.25360 * 11 10 9 27 27 H 1.08000 * 120.05876 * 359.97438 * 14 13 12 28 28 H 1.07999 * 119.90144 * 180.02562 * 15 14 13 29 29 H 1.09004 * 109.47605 * 209.99919 * 17 16 15 30 30 H 1.09001 * 109.47325 * 329.99792 * 17 16 15 31 31 H 0.96703 * 114.00395 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.94512 * 179.97438 * 19 16 15 33 33 H 1.08001 * 119.94423 * 180.02562 * 22 12 11 34 34 H 1.08003 * 120.05901 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3752 2.1124 -1.3938 5 1 1.5013 2.6169 0.8113 6 1 3.5921 1.4097 0.5825 7 6 2.0080 -1.2125 0.0005 8 1 1.5088 -2.1241 0.2942 9 6 3.3648 -1.2434 -0.3823 10 6 3.8571 -0.3108 -1.3173 11 6 5.1703 -0.3412 -1.6793 12 6 6.0284 -1.3000 -1.1287 13 6 7.4532 -1.3287 -1.5258 14 6 8.4524 -1.3671 -0.5513 15 6 9.7786 -1.3932 -0.9279 16 6 10.1222 -1.3819 -2.2691 17 6 11.5741 -1.4111 -2.6714 18 8 12.0005 -2.7671 -2.8183 19 6 9.1394 -1.3439 -3.2413 20 6 7.8057 -1.3228 -2.8789 21 9 6.8457 -1.2914 -3.8290 22 6 5.5433 -2.2325 -0.2046 23 6 4.2317 -2.2115 0.1633 24 1 -0.4851 0.8400 -0.0004 25 1 3.1958 0.4294 -1.7429 26 1 5.5495 0.3756 -2.3925 27 1 8.1871 -1.3755 0.4956 28 1 10.5518 -1.4233 -0.1745 29 1 11.6995 -0.8863 -3.6186 30 1 12.1739 -0.9228 -1.9034 31 1 12.9276 -2.8622 -3.0764 32 1 9.4144 -1.3349 -4.2858 33 1 6.2098 -2.9701 0.2176 34 1 3.8584 -2.9313 0.8768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244908708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:54:25 Heat of formation + Delta-G solvation = -60.521836 kcal Electronic energy + Delta-G solvation = -19483.409755 eV Core-core repulsion = 16259.755553 eV Total energy + Delta-G solvation = -3223.654202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.095 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.39305 -39.18424 -37.81607 -36.54834 -33.93131 -32.23152 -30.44729 -29.90367 -29.72684 -26.62089 -24.21850 -22.70094 -21.64992 -21.11932 -20.17277 -17.63654 -17.54288 -16.98493 -16.27424 -16.16187 -15.37663 -15.10218 -14.56383 -14.26302 -13.88692 -13.79670 -13.71277 -13.20189 -12.76401 -12.60775 -12.42361 -12.22657 -11.86183 -11.75212 -11.48128 -10.93261 -10.89544 -10.70712 -10.30935 -10.27668 -9.94738 -9.63901 -9.30467 -8.75719 -8.44579 -7.87123 -7.40742 -7.10236 -4.58218 1.22096 1.45980 2.48876 2.70977 3.05219 3.16072 3.25365 3.70790 3.89541 4.28206 4.41243 4.61390 4.85896 4.88674 5.19508 5.22766 5.25262 5.36997 5.41672 5.64547 5.95191 6.00979 6.08703 6.29473 6.33474 6.49878 6.58772 6.63402 6.76265 6.81880 7.05031 7.13169 7.37210 7.40748 7.55463 7.69502 7.78999 8.01253 8.21951 8.54792 8.66549 9.90680 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.037900 B = 0.004207 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.610288 B = 6654.338897 C = 6777.166095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.083 3.917 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.242 1.242 7 C -0.434 4.434 8 H 0.094 0.906 9 C 0.100 3.900 10 C -0.242 4.242 11 C -0.041 4.041 12 C -0.214 4.214 13 C -0.010 4.010 14 C -0.104 4.104 15 C -0.106 4.106 16 C -0.099 4.099 17 C 0.123 3.877 18 O -0.567 6.567 19 C -0.131 4.131 20 C 0.083 3.917 21 F -0.135 7.135 22 C -0.052 4.052 23 C -0.214 4.214 24 H 0.288 0.712 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.131 0.869 28 H 0.123 0.877 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.377 0.623 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.012 0.718 -2.868 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.138 4.138 3 Si 0.740 3.260 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.165 1.165 7 C -0.461 4.461 8 H 0.112 0.888 9 C 0.097 3.903 10 C -0.261 4.261 11 C -0.059 4.059 12 C -0.216 4.216 13 C -0.011 4.011 14 C -0.123 4.123 15 C -0.124 4.124 16 C -0.099 4.099 17 C 0.046 3.954 18 O -0.373 6.373 19 C -0.150 4.150 20 C 0.064 3.936 21 F -0.113 7.113 22 C -0.070 4.070 23 C -0.233 4.233 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.111 0.889 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.224 0.776 32 H 0.146 0.854 33 H 0.115 0.885 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.037 0.696 -2.713 17.266 hybrid contribution 0.524 0.885 -0.428 1.114 sum 17.561 1.581 -3.141 17.910 Atomic orbital electron populations 1.69684 1.08247 1.30705 1.33296 1.26279 0.94765 1.02115 0.90651 0.86253 0.81349 0.79298 0.79060 1.19425 1.21655 1.16536 1.19597 0.93289 0.96207 1.36996 0.88835 1.17807 0.92886 0.90647 0.88978 1.20697 0.95483 1.05317 1.04605 1.20358 0.93229 0.95935 0.96420 1.17863 0.90362 1.04435 1.08890 1.19110 0.94734 0.96729 0.90500 1.21195 0.91352 1.00304 0.99407 1.20922 0.96285 1.00148 0.95031 1.19243 0.93656 1.03903 0.93110 1.20912 0.91598 0.83412 0.99499 1.86613 1.31959 1.26181 1.92521 1.20819 0.90846 1.03270 1.00039 1.17836 0.85132 1.04908 0.85758 1.91486 1.62997 1.93859 1.63001 1.20388 0.95387 0.96118 0.95137 1.20695 0.93105 1.04347 1.05170 0.90111 0.88040 0.88872 0.85066 0.85939 0.92936 0.92735 0.77643 0.85439 0.88546 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.72 13.93 55.55 0.77 -19.95 16 2 C 0.08 2.12 5.40 -17.33 -0.09 2.03 16 3 Si 0.91 20.53 24.51 -169.99 -4.17 16.36 16 4 H -0.27 -5.89 6.70 56.52 0.38 -5.51 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.24 -5.59 6.87 56.52 0.39 -5.20 16 7 C -0.43 -11.51 9.55 -37.87 -0.36 -11.88 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 9 C 0.10 2.52 5.10 -106.80 -0.55 1.98 16 10 C -0.24 -5.90 7.10 -39.28 -0.28 -6.18 16 11 C -0.04 -0.93 8.80 -39.65 -0.35 -1.28 16 12 C -0.21 -4.58 5.34 -104.63 -0.56 -5.14 16 13 C -0.01 -0.18 5.47 -104.81 -0.57 -0.76 16 14 C -0.10 -1.63 9.51 -39.19 -0.37 -2.01 16 15 C -0.11 -1.42 9.68 -39.63 -0.38 -1.80 16 16 C -0.10 -1.32 5.52 -104.53 -0.58 -1.90 16 17 C 0.12 1.20 7.16 36.00 0.26 1.46 16 18 O -0.57 -5.86 13.64 -35.23 -0.48 -6.34 16 19 C -0.13 -1.94 9.66 -39.56 -0.38 -2.33 16 20 C 0.08 1.48 7.16 -38.99 -0.28 1.20 16 21 F -0.13 -2.60 15.91 2.25 0.04 -2.57 16 22 C -0.05 -1.10 9.44 -39.66 -0.37 -1.48 16 23 C -0.21 -4.94 9.73 -39.28 -0.38 -5.32 16 24 H 0.29 6.75 8.30 -40.82 -0.34 6.42 16 25 H 0.10 2.46 4.73 -52.49 -0.25 2.21 16 26 H 0.09 1.96 7.79 -52.49 -0.41 1.55 16 27 H 0.13 1.89 8.04 -52.49 -0.42 1.47 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.38 1.84 9.12 45.56 0.42 2.25 16 32 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.10 1.78 8.03 -52.49 -0.42 1.36 16 34 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 297.70 15.07 4.49 4.49 Total: -1.00 -29.20 297.70 -7.39 -36.59 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -2.79 Total: 4.81 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: -5.25 Total: -33.39 kcal Atomic # 7 Polarization: -20.72 SS G_CDS: 0.77 Total: -19.95 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.48 Total: -6.34 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.17 Total: 16.36 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.20 -7.39 -36.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244908708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.931 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds