Wall clock time and date at job start Mon Mar 30 2020 19:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86795 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47199 * 275.41488 * 3 2 1 5 5 H 1.48504 * 109.46968 * 35.41270 * 3 2 1 6 6 H 1.48495 * 109.47046 * 155.41251 * 3 2 1 7 7 C 1.40002 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00425 * 341.72750 * 7 2 1 9 9 C 1.41019 * 119.99441 * 161.73007 * 7 2 1 10 10 C 1.40937 * 120.11258 * 330.10969 * 9 7 2 11 11 C 1.36245 * 119.87778 * 179.70438 * 10 9 7 12 12 C 1.39964 * 120.11350 * 0.27905 * 11 10 9 13 13 C 1.47936 * 119.88204 * 179.97438 * 12 11 10 14 14 C 1.39623 * 120.16133 * 129.99725 * 13 12 11 15 15 C 1.37887 * 119.87871 * 180.02562 * 14 13 12 16 16 C 1.38449 * 120.20724 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.84016 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47388 * 90.00117 * 17 16 15 19 19 C 1.38295 * 120.32453 * 0.02562 * 16 15 14 20 20 C 1.38227 * 120.11682 * 359.72036 * 19 16 15 21 21 F 1.35103 * 120.10671 * 180.27791 * 20 19 16 22 22 C 1.39963 * 120.24017 * 0.02562 * 12 11 10 23 23 C 1.36237 * 120.11470 * 0.02562 * 22 12 11 24 24 H 0.97003 * 120.00443 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.06859 * 359.97438 * 10 9 7 26 26 H 1.07997 * 119.94364 * 180.25360 * 11 10 9 27 27 H 1.08000 * 120.05876 * 359.97438 * 14 13 12 28 28 H 1.07999 * 119.90144 * 180.02562 * 15 14 13 29 29 H 1.09004 * 109.47605 * 209.99919 * 17 16 15 30 30 H 1.09001 * 109.47325 * 329.99792 * 17 16 15 31 31 H 0.96703 * 114.00395 * 180.02562 * 18 17 16 32 32 H 1.08003 * 119.94512 * 179.97438 * 19 16 15 33 33 H 1.08001 * 119.94423 * 180.02562 * 22 12 11 34 34 H 1.08003 * 120.05901 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3752 2.1124 -1.3938 5 1 1.5013 2.6169 0.8113 6 1 3.5921 1.4097 0.5825 7 6 2.0080 -1.2125 0.0005 8 1 1.5088 -2.1241 0.2942 9 6 3.3648 -1.2434 -0.3823 10 6 3.8571 -0.3108 -1.3173 11 6 5.1703 -0.3412 -1.6793 12 6 6.0284 -1.3000 -1.1287 13 6 7.4532 -1.3287 -1.5258 14 6 8.4524 -1.3671 -0.5513 15 6 9.7786 -1.3932 -0.9279 16 6 10.1222 -1.3819 -2.2691 17 6 11.5741 -1.4111 -2.6714 18 8 12.0005 -2.7671 -2.8183 19 6 9.1394 -1.3439 -3.2413 20 6 7.8057 -1.3228 -2.8789 21 9 6.8457 -1.2914 -3.8290 22 6 5.5433 -2.2325 -0.2046 23 6 4.2317 -2.2115 0.1633 24 1 -0.4851 0.8400 -0.0004 25 1 3.1958 0.4294 -1.7429 26 1 5.5495 0.3756 -2.3925 27 1 8.1871 -1.3755 0.4956 28 1 10.5518 -1.4233 -0.1745 29 1 11.6995 -0.8863 -3.6186 30 1 12.1739 -0.9228 -1.9034 31 1 12.9276 -2.8622 -3.0764 32 1 9.4144 -1.3349 -4.2858 33 1 6.2098 -2.9701 0.2176 34 1 3.8584 -2.9313 0.8768 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244908708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:54:25 Heat of formation + Delta-G solvation = -78.613122 kcal Electronic energy + Delta-G solvation = -19484.194252 eV Core-core repulsion = 16259.755553 eV Total energy + Delta-G solvation = -3224.438699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.095 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.80014 -40.46911 -39.39670 -37.42409 -35.72087 -33.71017 -31.87092 -31.51426 -31.19306 -27.97355 -25.67602 -24.03257 -23.14939 -22.69676 -21.71711 -19.44582 -18.35162 -18.30757 -17.69059 -17.43045 -16.98263 -16.53808 -15.80090 -15.62062 -15.55425 -15.14902 -15.00087 -14.62599 -14.34772 -14.19333 -13.82932 -13.77930 -13.32005 -13.19708 -12.75635 -12.57922 -12.51437 -12.08664 -12.05586 -11.65133 -11.47111 -11.10331 -10.92332 -10.10007 -9.74547 -9.67645 -9.09318 -8.99643 -6.54433 -0.05730 0.27491 0.77251 0.87170 1.23425 1.36822 1.45089 2.07805 2.42750 2.64771 3.27217 3.43559 3.63725 3.83746 3.88943 4.09465 4.21916 4.26900 4.32277 4.35432 4.51775 4.61316 4.66625 4.87845 4.93654 4.98482 5.11631 5.15344 5.24116 5.37917 5.50023 5.56836 5.69213 5.83612 5.94418 5.99329 6.15491 6.30862 6.64881 6.75455 6.98307 8.07833 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.037900 B = 0.004207 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.610288 B = 6654.338897 C = 6777.166095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.051 3.949 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.475 4.475 8 H 0.063 0.937 9 C 0.081 3.919 10 C -0.252 4.252 11 C -0.056 4.056 12 C -0.191 4.191 13 C -0.048 4.048 14 C -0.100 4.100 15 C -0.099 4.099 16 C -0.088 4.088 17 C 0.122 3.878 18 O -0.590 6.590 19 C -0.133 4.133 20 C 0.063 3.937 21 F -0.152 7.152 22 C -0.054 4.054 23 C -0.222 4.222 24 H 0.297 0.703 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.143 0.857 28 H 0.159 0.841 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.401 0.599 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.816 1.159 -3.134 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.166 4.166 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.079 3.921 10 C -0.271 4.271 11 C -0.074 4.074 12 C -0.192 4.192 13 C -0.049 4.049 14 C -0.118 4.118 15 C -0.117 4.117 16 C -0.089 4.089 17 C 0.045 3.955 18 O -0.400 6.400 19 C -0.152 4.152 20 C 0.044 3.956 21 F -0.131 7.131 22 C -0.072 4.072 23 C -0.241 4.241 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.124 0.876 27 H 0.161 0.839 28 H 0.176 0.824 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.252 0.748 32 H 0.165 0.835 33 H 0.147 0.853 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 21.864 1.130 -2.987 22.096 hybrid contribution -0.497 0.601 -0.443 0.898 sum 21.367 1.731 -3.430 21.710 Atomic orbital electron populations 1.69700 1.09138 1.31822 1.35623 1.26854 0.95326 1.04228 0.90157 0.85501 0.79731 0.76609 0.79424 1.18724 1.19765 1.17718 1.19528 0.94479 0.95874 1.40517 0.91880 1.17947 0.92739 0.91841 0.89620 1.20772 0.96366 1.05338 1.04667 1.20593 0.92889 0.96904 0.97050 1.18296 0.92084 1.02358 1.06512 1.19071 0.93555 1.00616 0.91678 1.21377 0.91825 0.99274 0.99354 1.21333 0.96034 0.98259 0.96079 1.19829 0.95616 1.00593 0.92819 1.20998 0.89255 0.83741 1.01466 1.86528 1.34344 1.26298 1.92822 1.21104 0.89763 1.02612 1.01680 1.18149 0.86096 1.06105 0.85289 1.91443 1.63891 1.94168 1.63563 1.20716 0.94944 0.96566 0.94973 1.20924 0.93881 1.04021 1.05299 0.89230 0.88478 0.87556 0.83944 0.82370 0.91084 0.89973 0.74821 0.83537 0.85312 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.74 13.93 21.84 0.30 -45.44 16 2 C 0.05 2.73 5.40 85.27 0.46 3.19 16 3 Si 0.96 43.31 24.51 68.60 1.68 44.99 16 4 H -0.26 -11.32 6.70 99.48 0.67 -10.66 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 6 H -0.25 -11.69 6.87 99.48 0.68 -11.01 16 7 C -0.48 -26.84 9.55 23.38 0.22 -26.62 16 8 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 9 C 0.08 4.24 5.10 -21.27 -0.11 4.13 16 10 C -0.25 -12.55 7.10 22.47 0.16 -12.39 16 11 C -0.06 -2.53 8.80 22.22 0.20 -2.34 16 12 C -0.19 -7.96 5.34 -19.87 -0.11 -8.07 16 13 C -0.05 -1.68 5.47 -19.99 -0.11 -1.79 16 14 C -0.10 -2.77 9.51 22.52 0.21 -2.56 16 15 C -0.10 -2.17 9.68 22.24 0.22 -1.95 16 16 C -0.09 -1.93 5.52 -19.80 -0.11 -2.04 16 17 C 0.12 1.70 7.16 71.23 0.51 2.21 16 18 O -0.59 -9.23 13.64 -148.98 -2.03 -11.26 16 19 C -0.13 -3.49 9.66 22.28 0.22 -3.28 16 20 C 0.06 2.11 7.16 22.65 0.16 2.27 16 21 F -0.15 -5.75 15.91 44.97 0.72 -5.03 16 22 C -0.05 -2.23 9.44 22.22 0.21 -2.02 16 23 C -0.22 -10.39 9.73 22.47 0.22 -10.17 16 24 H 0.30 14.48 8.30 -92.71 -0.77 13.71 16 25 H 0.10 4.82 4.73 -2.91 -0.01 4.81 16 26 H 0.11 4.43 7.79 -2.91 -0.02 4.41 16 27 H 0.14 3.56 8.04 -2.91 -0.02 3.54 16 28 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 29 H 0.07 0.76 8.08 -2.38 -0.02 0.74 16 30 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.40 1.94 9.12 -74.05 -0.68 1.27 16 32 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.13 4.43 8.03 -2.91 -0.02 4.41 16 34 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -66.02 297.70 3.42 -62.61 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.40 Total: 15.54 kcal Atomic # 6 Polarization: -63.77 SS G_CDS: 2.35 Total: -61.42 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.30 Total: -45.44 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -2.03 Total: -11.26 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.72 Total: -5.03 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.68 Total: 44.99 kcal Total: -66.02 3.42 -62.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244908708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.006 kcal (2) G-P(sol) polarization free energy of solvation -66.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds